BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0005.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771919.1| hypothetical protein bll5279 [Bradyrhizobium ja... 325 4e-87 ref|YP_001241906.1| hypothetical protein BBta_6073 [Bradyrhizobi... 268 7e-70 ref|YP_004143710.1| hypothetical protein Mesci_4551 [Mesorhizobi... 110 2e-22 ref|YP_003692985.1| hypothetical protein Snov_1046 [Starkeya nov... 98 2e-18 ref|ZP_06887455.1| conserved hypothetical protein [Methylosinus ... 97 4e-18 >ref|NP_771919.1| hypothetical protein bll5279 [Bradyrhizobium japonicum USDA 110] dbj|BAC50544.1| bll5279 [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 187/303 (61%), Positives = 224/303 (73%), Gaps = 20/303 (6%) Query: 1 MRQSRLVLLSVALIGLLAGSCPLRAEAGRATASPLGVSIHDFGYVDTSGEVIDQTAAHQR 60 M SRL+ + L+ L A P + +GV++ DF Y DTS E +QTAAH+R Sbjct: 33 MHLSRLICSAFLLVVLPAAYSPA------GAGAAIGVAMDDFSYTDTSAEPANQTAAHER 86 Query: 61 RLDAFMRALRADVAAEPRYRLVSSAAPAGEARIKVVGGVQKMSTLVQWAKVAVIDVEANQ 120 RL AFM ALR D++A+ RYR V SA A KV+GG+QK STLVQWAKVAVIDV A + Sbjct: 87 RLSAFMAALRRDISADGRYRPVPSAQDG--AAFKVIGGIQKTSTLVQWAKVAVIDVGAKR 144 Query: 121 VLYEKLYTFRGDTDEAWDHARMFVSREVRGVLAAVLPPGQTAAAAPIGLAVFAFELEDTS 180 ++ +KLYTFRGD DE+W+ A +FVSREV +AA+ P AP+ LAVF FELEDT+ Sbjct: 145 LVMDKLYTFRGDNDESWERAEIFVSREV---MAALSTP------APVALAVFDFELEDTT 195 Query: 181 AAPSSGLADADAAYLADVTKGVRDRLAQSGRYRLVDTGGATAEPVKARALRDCDGCEAAI 240 AA + A +DA+YLA+VT VR+ L QSGRYR+VD G E VKARALRDC GCEAAI Sbjct: 196 AASAGASAASDASYLAEVTGSVREALGQSGRYRIVDISG---EAVKARALRDCGGCEAAI 252 Query: 241 AQQLGADQSLIGVIRRVSRTEYTIGFQLRDARSGAVVSRGDSGLRMGADYSWTRGAVRLV 300 AQ+LGADQSLIGV+RRVSRTEYT+GFQLRDAR+GAV++RGDSGLRMGADYSW RGAVRLV Sbjct: 253 AQKLGADQSLIGVVRRVSRTEYTLGFQLRDARTGAVLARGDSGLRMGADYSWKRGAVRLV 312 Query: 301 GDR 303 DR Sbjct: 313 SDR 315 >ref|YP_001241906.1| hypothetical protein BBta_6073 [Bradyrhizobium sp. BTAi1] gb|ABQ38000.1| hypothetical protein BBta_6073 [Bradyrhizobium sp. BTAi1] Length = 314 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 157/306 (51%), Positives = 199/306 (65%), Gaps = 32/306 (10%) Query: 13 LIGLLAGSCPLRAEAGRATASPLGVSIHDFGYVDTSGEVIDQTAAHQRRLDAFMRALRAD 72 + LL + PLR+ A A+ V + DF Y+DTSGE IDQTAAHQRRL AF+ AL+ D Sbjct: 11 FLALLVVAGPLRSAA--ASDPVPAVMVDDFSYLDTSGEPIDQTAAHQRRLQAFVAALKHD 68 Query: 73 VAAEPRYRLVSSAA------------------PAGEARIKVVGGVQKMSTLVQWAKVAVI 114 VA + R RLVS + A A I + GGVQK+STLVQWA+VA I Sbjct: 69 VATDQRLRLVSPSCGAACPAADAPPAARLQMAAAAGAGIVITGGVQKLSTLVQWARVAAI 128 Query: 115 DVEANQVLYEKLYTFRGDTDEAWDHARMFVSREVRGVLAAVLPPGQTAAAAPIGLAVFAF 174 DV +++VL++KL+TFRGD DEAW+ A FVSR++R L V P AP+ LA+ F Sbjct: 129 DVASSRVLFDKLFTFRGDNDEAWERAETFVSRQMREAL--VTP-------APVRLALLPF 179 Query: 175 ELEDTSAAPSSGLADADAAYLADVTKGVRDRLAQSGRYRLVDTGGATAEPVKARALRDCD 234 EL+DTSA + G +AD L T VR L QSGRYRLVD A A + LR CD Sbjct: 180 ELDDTSAGAALGETEADHKELQAATDAVRQVLEQSGRYRLVD---AAAGIKPGQGLRACD 236 Query: 235 GCEAAIAQQLGADQSLIGVIRRVSRTEYTIGFQLRDARSGAVVSRGDSGLRMGADYSWTR 294 CEA IA++LGA QSL+G+IRR+ RTEY +GF++R A GA+V GDSGLR+GA+YSW+R Sbjct: 237 DCEARIARELGAQQSLLGIIRRIGRTEYIVGFRVRQADDGALVLAGDSGLRLGANYSWSR 296 Query: 295 GAVRLV 300 GAVR++ Sbjct: 297 GAVRVI 302 >ref|YP_004143710.1| hypothetical protein Mesci_4551 [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13660.1| hypothetical protein Mesci_4551 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 168 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 160 QTAAAAPIGLAVFAFELEDTSAAPSSGLADA-DAAYLADVTKGVRDRLAQSGRYRLVDTG 218 Q P+ + VF FELED SA D D YL++ + +D L+QSGR+ ++D Sbjct: 21 QAQQTKPMSIEVFPFELEDKSAGAGIIPPDEYDRRYLSESAQVAKDMLSQSGRFTVIDVP 80 Query: 219 GATAEPVKARALRDCDGCEAAIAQQLGADQSLIGVIRRVSRTEYTIGFQLRDARSGAVVS 278 + LR+C GCE IA++ GA +L+GV+ RV+RTE+T+ ++ DA +G VS Sbjct: 81 ARDTQAAAPHGLRNCAGCEGPIAKEHGASLALLGVVTRVNRTEHTMFIRILDAETGKHVS 140 Query: 279 RGDSGLRMGADYSWTRGAVRLVGDR 303 G + LRMGA+Y+W R L+ +R Sbjct: 141 EGFTDLRMGANYAWPRSVKWLMKNR 165 >ref|YP_003692985.1| hypothetical protein Snov_1046 [Starkeya novella DSM 506] gb|ADH88366.1| conserved hypothetical protein [Starkeya novella DSM 506] Length = 174 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 2/136 (1%) Query: 169 LAVFAFELEDTSA-APSSGLADADAAYLADVTKGVRDRLAQSGRYRLVDTGGATAEPVKA 227 +AVF FEL DTS A SG +A LA +T +R+RL ++G Y +VD AE +A Sbjct: 28 VAVFDFELFDTSGEAGPSGPKPEEARRLALITDDLRERLKKAG-YEVVDLSPKKAEITEA 86 Query: 228 RALRDCDGCEAAIAQQLGADQSLIGVIRRVSRTEYTIGFQLRDARSGAVVSRGDSGLRMG 287 R+C+ CE IA+ LGA +IG++++VS I FQLRD +G V+ G + +R Sbjct: 87 SPFRNCNSCELEIARSLGAQIEVIGLVQKVSNLILNINFQLRDVATGEVLRAGSADIRNN 146 Query: 288 ADYSWTRGAVRLVGDR 303 D SW RG L+ +R Sbjct: 147 TDESWLRGVSYLIRNR 162 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 61/153 (39%), Gaps = 29/153 (18%) Query: 37 VSIHDFGYVDTSGEV--IDQTAAHQRRLDAFMRALRAD--------VAAEPRYRLVSSAA 86 V++ DF DTSGE RRL LR V P+ ++ A+ Sbjct: 28 VAVFDFELFDTSGEAGPSGPKPEEARRLALITDDLRERLKKAGYEVVDLSPKKAEITEAS 87 Query: 87 PAGE-------------ARIKVVGGVQKMSTLVQWAKVAVIDVEANQVLYEKLYTFRGDT 133 P A+I+V+G VQK+S L+ + DV +VL R +T Sbjct: 88 PFRNCNSCELEIARSLGAQIEVIGLVQKVSNLILNINFQLRDVATGEVLRAGSADIRNNT 147 Query: 134 DEAWDHARMFVSREVRGVLAAVLPPGQTAAAAP 166 DE+W VS +R L L P T AAP Sbjct: 148 DESWLRG---VSYLIRNRL---LDPPLTGKAAP 174 >ref|ZP_06887455.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gb|EFH04134.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 178 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 143 FVSREVRGVLAAVLPPGQTAAAAPIGLAVFAFELEDTSAA-PSSGLADADAAYLADVTKG 201 F S + G +A + P AA P+ L VF EL+D SA P +G + + L +T+ Sbjct: 4 FFSIILLGAVALLSSPA--LAAPPLKLVVFDLELDDFSAGGPLAGESAEETERLRKMTRL 61 Query: 202 VRDRLAQSGRYRLVDTGGATAEPVKARALRDCDGCEAAIAQQLGADQSLIGVIRRVSRTE 261 R+ LA SG + +VD G V LR C+GC+A +A+ GAD S +G+ R++S E Sbjct: 62 ARELLAASGLFEIVDAGATDEARVAQHWLRKCNGCDADVARAAGADLSFVGLFRKISVME 121 Query: 262 YTIGFQLRDARSGAVVSRGDSGLRMGADYSWTRGAVRLV 300 + F++RDARSG +V+ + LR D SW R L+ Sbjct: 122 QVLEFRIRDARSGELVNISQTDLRGETDESWRRALTYLI 160