BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0004.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771920.1| two-component sensor histidine kinase [Bradyrhi... 588 e-165 ref|YP_001241907.1| putative two-component sensor histidine kina... 492 e-137 ref|YP_002362568.1| integral membrane sensor signal transduction... 439 e-121 ref|YP_004512810.1| integral membrane sensor signal transduction... 294 3e-77 ref|ZP_08536182.1| methanol utilization control sensor protein m... 280 3e-73 >ref|NP_771920.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC50545.1| blr5280 [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 327/473 (69%), Positives = 362/473 (76%), Gaps = 13/473 (2%) Query: 1 MWIWSGSDLKLRLTLRVAIVSTLCFAVISGYFLVEADRSVRGRIAAVADVAAKTLELQQS 60 MW DLK+RLTLRVA +S CFA IS YFLV ADR RI +A + AK+LELQQ Sbjct: 1 MWNRPRFDLKVRLTLRVAAISAACFAAISAYFLVTADREAHARIDGIAAIVAKSLELQQG 60 Query: 61 KIQWLNNARSDFPDLDSVAATVMTPGLCIAFRSNSGEISQRFCGGAQADQAAPPLAFAAL 120 K+QW+ N RSDFP+LD V+A VMTPGLC+AFR +GEI QRFC GA PP FAA Sbjct: 61 KVQWVANPRSDFPNLDPVSAYVMTPGLCLAFRGANGEILQRFCSGAPTPANPPPQVFAAF 120 Query: 121 YRRLFDPGRETVRQVVSRGNAVGEAVAWIDPAVPTAEAWHDAGRLMAVFMIALPLLCALV 180 YR LFDPGRE R V+ RG +GE V +DPAV TAEAWH+AGRLM IALPLLCALV Sbjct: 121 YRSLFDPGREAARPVIVRGAKLGETVVSVDPAVQTAEAWHEAGRLMIALAIALPLLCALV 180 Query: 181 YAALARALRPTRQIRDGLERIAAGDLAARLPPFDLAELSAIGDVFNQLAERLAAALSDRN 240 YAALARALRPTR IR GLERIAA DL ARLPPFDLAELSAI DVFN LAE L AL++R+ Sbjct: 181 YAALARALRPTRMIRTGLERIAANDLTARLPPFDLAELSAIRDVFNHLAESLDTALAERS 240 Query: 241 ALTQKLILVQDEERRHLARELHDEFGQSLAAIRALAASARQTAAADCPPLLAECDGIART 300 LT+KLI +QDEERRHLARELHDEFGQSLAAIRALAASARQTA DCP LL+ECDGIART Sbjct: 241 ELTRKLIALQDEERRHLARELHDEFGQSLAAIRALAASARQTAVQDCPSLLSECDGIART 300 Query: 301 ATGMMETLRGALFRLRPPDVDELGLAASLEGLVASWNGRSRGQPRFEITISGSFERLAAS 360 ATGMME LRG LFRLRPPDV+ELGL ASLEGLVA WNGRSRG+ RF I G+FE L A+ Sbjct: 301 ATGMMEMLRGTLFRLRPPDVEELGLVASLEGLVAGWNGRSRGETRFAIRFDGAFETLPAA 360 Query: 361 VGANLYRIVQEALTNAAKHAGATRVMLRLEMREAAPGGGDSAIVLAIDDDGQPGDLQGDP 420 + A+LYRIVQEALTNAAKHAGAT+V L L MR I LAIDDDG+ DP Sbjct: 361 ISASLYRIVQEALTNAAKHAGATKVSLELTMRA-------DEIALAIDDDGR----SSDP 409 Query: 421 QLKSGLGLLGMRERVAALGGRLSFETGQPSGSSLRVIVPVAASREAAPVERAA 473 KSG+GLLGMRERVAAL G+LSFE G G++LRV +PVAA R +ERAA Sbjct: 410 AAKSGMGLLGMRERVAALRGKLSFEAGPHGGTALRVTIPVAADRPV--LERAA 460 >ref|YP_001241907.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ38001.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 521 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/473 (60%), Positives = 337/473 (71%), Gaps = 6/473 (1%) Query: 3 IWSGSDLKLRLTLRVAIVSTLCFAVISGYFLVEADRSVRGRIAAVADVAAKTLELQQSKI 62 +W+ DLK RLTLR++ V+TLCFA I Y L + RS R A +A++ A+TL+LQQSK+ Sbjct: 53 MWTRYDLKYRLTLRISGVATLCFAAICAYVLFDIARSADARNARIAEITARTLQLQQSKM 112 Query: 63 QWLNNARSDFPDLDSVAATVMTPGLCIAFRSNSGEISQRFCGGAQADQAAPPLAFAALYR 122 QW+NN + FPDLD+VAA MTPGLCIA+R+ + QR CGGA A PP AFA LYR Sbjct: 113 QWVNNPPAGFPDLDAVAAASMTPGLCIAYRAVGDHMLQRICGGADAQSDEPPRAFAMLYR 172 Query: 123 RLFDPGRETVRQVVSRGNAVGEAVAWIDPAVPTAEAWHDAGRLMAVFMIALPLLCALVYA 182 LF PG+E R V+SR +G+AV WID V TA+AW + RL+ V AL LLC L +A Sbjct: 173 GLFGPGQEATRSVLSRDRKIGDAVVWIDADVMTADAWRELRRLLPVLGTALVLLCVLAHA 232 Query: 183 ALARALRPTRQIRDGLERIAAGDLAARLPPFDLAELSAIGDVFNQLAERLAAALSDRNAL 242 ALARALRPTR I GLERI A DL ARLPPFDLAELSAI D FNQLA+ L AAL+ R+ L Sbjct: 233 ALARALRPTRLICAGLERIVANDLTARLPPFDLAELSAIRDAFNQLADGLQAALAQRSEL 292 Query: 243 TQKLILVQDEERRHLARELHDEFGQSLAAIRALAASARQTAAADCPPLLAECDGIARTAT 302 T++LI +QD+ERRHLARELHDEFGQSLAAIRALAA+ R++ A CP L ECD IARTA Sbjct: 293 TRRLIALQDDERRHLARELHDEFGQSLAAIRALAAAMRESVALACPAALGECDSIARTAA 352 Query: 303 GMMETLRGALFRLRPPDVDELGLAASLEGLVASWNGRSRGQPRFEITISGSFERLAASVG 362 MMETLRGAL RLRPPD+DELGLAASLEGLVA WN R RG RFEI +SG +RL + Sbjct: 353 DMMETLRGALVRLRPPDIDELGLAASLEGLVAGWNRRQRGPARFEIDLSGPIDRLPDTTA 412 Query: 363 ANLYRIVQEALTNAAKHAGATRVMLRLEMREA-APGGGDSAIVLAIDDDGQPGDLQGDPQ 421 NLYRI QEALTN AKH+ ATRV L+L + + G IVL + DDG DL G P Sbjct: 413 NNLYRIAQEALTNCAKHSAATRVRLQLAAQNSLGQGPSPDRIVLTVADDGAASDLMGPP- 471 Query: 422 LKSGLGLLGMRERVAALGGRLSFETGQPSGSSLRVIVPVAA-SREAAPVERAA 473 G+GLLG+RERVA+LGG +SF G GS L V +PV A S AP+ AA Sbjct: 472 ---GMGLLGIRERVASLGGDMSFAAGDHGGSRLHVTIPVPAFSPVQAPIGCAA 521 >ref|YP_002362568.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] gb|ACK51206.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 471 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/447 (57%), Positives = 299/447 (66%), Gaps = 17/447 (3%) Query: 31 YFLVEADRSVRGRIAAVADVAAKTLELQQSKIQWLNNARSD-----FPDLDSVAATVMTP 85 Y L + DR+ R R +AD A L LQQ W+ R++ FPDL +A VM P Sbjct: 30 YVLFDTDRAARARAETIADAVAGDLSLQQGVAHWVQINRAEAGSDPFPDLQRIATAVMAP 89 Query: 86 GLCIAFRSNSGEISQRFCGGAQADQAAPPLAFAALYRRLFDPGRETVRQVVSRGNAVGEA 145 GLCIAFR+ +G I QR C GA A PL FAALY+ LF GRE R V+ G A GEA Sbjct: 90 GLCIAFRAENGGIVQRLCSGAAPGDAGAPLLFAALYQGLFGAGREAARPVMYGGAAHGEA 149 Query: 146 VAWIDPAVPTAEAWHDAGRLMAVFMIALPLLCALVYAALARALRPTRQIRDGLERIAAGD 205 V ID ++W + RL+A+ L LC LVYAALA ALRPTR IR+GL R+ GD Sbjct: 150 VVSIDRQSLIGQSWRETSRLLAIMAATLVGLCVLVYAALADALRPTRAIREGLARLVGGD 209 Query: 206 LAARLPPFDLAELSAIGDVFNQLAERLAAALSDRNALTQKLILVQDEERRHLARELHDEF 265 L+ARLPPFDLAELSA+G VFN LA L L++RNALT++LI VQDEER HLARELHDEF Sbjct: 210 LSARLPPFDLAELSAVGAVFNDLAGNLETTLAERNALTRRLIAVQDEERLHLARELHDEF 269 Query: 266 GQSLAAIRALAASARQTAAADCPPLLAECDGIARTATGMMETLRGALFRLRPPDVDELGL 325 GQ LAAI A+AASA QTA DCP L C I RTA MM+ LRGAL RLRPPDV+ELGL Sbjct: 270 GQCLAAIGAMAASAGQTARRDCPALEPPCQSIGRTAAHMMQALRGALLRLRPPDVEELGL 329 Query: 326 AASLEGLVASWNGRSRGQPRFEITISGSFERLAASVGANLYRIVQEALTNAAKHAGATRV 385 AASLEGLVA WNGR G RF I + G F+ L A+LYR+ QEA+TNAAKHA A +V Sbjct: 330 AASLEGLVAGWNGRG-GATRFSIELRGDFDALPRDFAASLYRVAQEAITNAAKHAEAAKV 388 Query: 386 MLRLEMREAAPGGGD--SAIVLAIDDDGQPGDLQGDPQLKSGLGLLGMRERVAALGGRLS 443 LRL +RE P G D + I LA+DDDG +G KSG+GLLGMRERV ALGGRLS Sbjct: 389 TLRLSLRE--PQGSDRRAHIELAVDDDG-----KGGADAKSGMGLLGMRERVEALGGRLS 441 Query: 444 FETGQPSGSSLRVIVPVAASREAAPVE 470 +T +PSG +LR +PV + AAP E Sbjct: 442 LKTSRPSGLALRAHIPVPPA--AAPDE 466 >ref|YP_004512810.1| integral membrane sensor signal transduction histidine kinase [Methylomonas methanica MC09] gb|AEG00311.1| integral membrane sensor signal transduction histidine kinase [Methylomonas methanica MC09] Length = 450 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 243/458 (53%), Gaps = 9/458 (1%) Query: 8 DLKLRLTLRVAIVSTLCFAVISGYFLVEADRSVRGRIAAVADVAAKTLELQQSKIQWLNN 67 +L+L L R++ ++ C ++S Y L ++ R +AD + LE Q Sbjct: 2 NLQLHLLSRISAIALACLLLVSAYVLFQSHRQAELAAWRIADSQGRLLESQLMLHSAGIG 61 Query: 68 ARSDFPDLDSVAATVMTPGLCIAFRSNSGEISQRFCGGAQADQAAPPLAFAALYRRLFDP 127 + FPD + + PG+C+ + + ++ C G + A P+ F YR F+P Sbjct: 62 QSNPFPDFEVWKQSGSQPGICLRYAAADNTTTRSLCNGTKPAIANWPILFETGYRWFFNP 121 Query: 128 GRETVRQVVSRGNAVGEAVAWIDPAVPTAEAWHDAGRLMAVFMIALPLLCALVYAALARA 187 GR+TVR + RG G + A AW +L + I + + ALVY ++ RA Sbjct: 122 GRQTVRPIALRGRVHGSLTVTPSAELELAAAWDKFLQLTTLSCITIFAVSALVYLSIRRA 181 Query: 188 LRPTRQIRDGLERIAAGDLAARLPPFDLAELSAIGDVFNQLAERLAAALSDRNALTQKLI 247 LRP I G+E + AG RLP F L E IG NQLA L++R L KLI Sbjct: 182 LRPAHTIVQGVETLEAGRFDFRLPDFQLNEWRHIGAAINQLAASQQQLLAERQRLVTKLI 241 Query: 248 LVQDEERRHLARELHDEFGQSLAAIRALAASARQTAAADCPPLLAECDGIARTATGMMET 307 +Q+ ERR+L RELHDEFGQ LAAI+A++ S RQTA CP L++E + I R MM + Sbjct: 242 TLQEAERRYLTRELHDEFGQCLAAIQAISLSIRQTAIQQCPELISETEHINRITGHMMTS 301 Query: 308 LRGALFRLRPPDVDELGLAASLEGLVASWNGRSRGQPRFEITISGSFERLAASVGANLYR 367 LR L +LRP + DELGLAASL LVA WNGRSRG RF++ I G L+ + NL+R Sbjct: 302 LRRLLGQLRPAEFDELGLAASLNSLVAGWNGRSRGNTRFQLDIYGDCTLLSETQAINLFR 361 Query: 368 IVQEALTNAAKHAGATRVMLRLEMREAAPGGGDSAIVLAIDDDGQPGDLQGDPQLKSGLG 427 I Q LTN +KHA A+ + L++ +I L I DDG L G+G Sbjct: 362 IAQACLTNISKHAKASSARIHLQI-------DSDSITLLIQDDGIADHLPFAD--TDGIG 412 Query: 428 LLGMRERVAALGGRLSFETGQPSGSSLRVIVPVAASRE 465 LLG+RER AL G+L+ QP G +++ +P + + E Sbjct: 413 LLGIRERATALHGQLTMSIAQPHGLIVKIELPASDNSE 450 >ref|ZP_08536182.1| methanol utilization control sensor protein moxY, putative [Methylophaga aminisulfidivorans MP] gb|EGL55651.1| methanol utilization control sensor protein moxY, putative [Methylophaga aminisulfidivorans MP] Length = 454 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/395 (37%), Positives = 212/395 (53%), Gaps = 8/395 (2%) Query: 72 FPDLDSVAATVMTPGLCIAFRSNSGEISQRFCGGAQADQAAPPLAFAALYRRLFDPGRET 131 FPD+ PG C F S + + C Q P+ F Y + F+PG E Sbjct: 66 FPDIGLWQKIESVPGSCTQFLSRTQSRQRSLCNATQTSNKNYPIWFGHFYAQFFNPGVEV 125 Query: 132 VRQVVSRGNAVGEAVAWIDPAVPTAEAWHDAGRLMAVFMIALPLLCALVYAALARALRPT 191 R V G + ++ + TA AWH+ + V ++ + LC LV+ + R L+P Sbjct: 126 KRSVSFNAIKYGTILVTLNVDIETARAWHNLQAALGVLVVTILALCCLVFITINRMLKPA 185 Query: 192 RQIRDGLERIAAGDLAARLPPFDLAELSAIGDVFNQLAERLAAALSDRNALTQKLILVQD 251 + I GLE++ AGDL+ RLP FD+AE N L L++ L+ K++ Q+ Sbjct: 186 KDIVSGLEKMRAGDLSVRLPDFDIAEWKRTSHAINALVSTQQNILAENKQLSIKIMNTQE 245 Query: 252 EERRHLARELHDEFGQSLAAIRALAASARQTAAADCPPLLAECDGIARTATGMMETLRGA 311 EE R+++RELHDEFGQ LA I A+ S QTA + CP L+ E I MM LR Sbjct: 246 EEHRYISRELHDEFGQCLAGINAVTTSVSQTAKSSCPELVDEIQSIRHITAHMMSALRDL 305 Query: 312 LFRLRPPDVDELGLAASLEGLVASWNGRSRGQPRFEITISGSFERLAASVGANLYRIVQE 371 L RLRP ++DELGL SL+ L+ SWN RS G+ + +++SGS L ++ ++YRIVQE Sbjct: 306 LTRLRPAELDELGLETSLKQLIKSWNQRSSGKTNYVLSLSGSINDLPETLAVHVYRIVQE 365 Query: 372 ALTNAAKHAGATRVMLRLEMREAAPGGGDSAIVLAIDDDGQPGDLQGDPQLKSGLGLLGM 431 LTN AKHA A + L++++ + + L I DDG DL +GLGLLG+ Sbjct: 366 CLTNIAKHASAEHADVVLDIQDG------TLLSLIIKDDG-IADLSAFST-SNGLGLLGI 417 Query: 432 RERVAALGGRLSFETGQPSGSSLRVIVPVAASREA 466 ERVAALGG LS +T G + +I+P+ EA Sbjct: 418 HERVAALGGDLSLDTQTNGGLVVSIILPMNPKTEA 452