BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0134.0003.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771921.1| two-component response regulator [Bradyrhizobiu... 361 5e-98 ref|YP_001241908.1| two-component response regulator [Bradyrhizo... 357 8e-97 ref|YP_002362567.1| LuxR family transcriptional regulator [Methy... 302 2e-80 ref|ZP_08536183.1| response regulator containing a CheY-like rec... 254 7e-66 ref|ZP_05104586.1| Sigma-70, region 4 family [Methylophaga thioo... 253 2e-65 >ref|NP_771921.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC50546.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 220 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 175/219 (79%), Positives = 197/219 (89%) Query: 1 MSHAARTIMLVDDHAVVREGYRAMLQKQPDLCVVAEASDGVEAYRLYKETGPDLVIMDLS 60 MS TI+LVDDH+VVREGYR++LQKQP L VVAEA+DG EAYRL+K PDLVIMDLS Sbjct: 1 MSAGDATILLVDDHSVVREGYRSVLQKQPGLRVVAEAADGAEAYRLFKSVAPDLVIMDLS 60 Query: 61 MPGIGGIEAIRRLRQWDRRAKILVFTMHQNAAFAVQAIRAGASGYVTKTSPPETLVHAVM 120 MPGIGGIEA+RR+RQWD+ A+ILVFTMHQNA FAVQAIRAGA GYVTKTSPPETLV AVM Sbjct: 61 MPGIGGIEAVRRIRQWDKGARILVFTMHQNAGFAVQAIRAGARGYVTKTSPPETLVRAVM 120 Query: 121 DALSGKIAISPDIDHELALSHLAGERKAADLLTAREFEVLRMLLAENTTEEIAEALHLSP 180 D L+G+IAISPDIDHELALS ++GE AAD+LT REFEVLR+LLAE +TEEIAE LH+SP Sbjct: 121 DVLAGRIAISPDIDHELALSRISGESSAADVLTPREFEVLRLLLAEESTEEIAETLHVSP 180 Query: 181 KTVANLHSLIKDKLGVGTDIELVRLALRQGILTQLDLGE 219 KTVANLHSLIKDKLGV +DIELVRLALRQG+LTQ+DLG+ Sbjct: 181 KTVANLHSLIKDKLGVDSDIELVRLALRQGLLTQVDLGK 219 >ref|YP_001241908.1| two-component response regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38002.1| putative two-component response regulator (LuxR family with receiver domain) [Bradyrhizobium sp. BTAi1] Length = 216 Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 176/213 (82%), Positives = 192/213 (90%) Query: 1 MSHAARTIMLVDDHAVVREGYRAMLQKQPDLCVVAEASDGVEAYRLYKETGPDLVIMDLS 60 M++AA TIMLVDDHAVVREGYR+MLQKQ L VVAEASDG EAYRL+KE PDLVIMDL+ Sbjct: 4 MTNAAGTIMLVDDHAVVREGYRSMLQKQHGLRVVAEASDGAEAYRLFKEVRPDLVIMDLT 63 Query: 61 MPGIGGIEAIRRLRQWDRRAKILVFTMHQNAAFAVQAIRAGASGYVTKTSPPETLVHAVM 120 MPG+GGIE IRR+RQWDR A+ILVFTMH+NA FAVQAIRAGA GYVTK+SPPE LV AVM Sbjct: 64 MPGVGGIEGIRRIRQWDRDARILVFTMHENAGFAVQAIRAGARGYVTKSSPPEILVRAVM 123 Query: 121 DALSGKIAISPDIDHELALSHLAGERKAADLLTAREFEVLRMLLAENTTEEIAEALHLSP 180 + L G IAISPDIDHELALS L GER AAD+LTAREFEV++MLLAE TTEEIA ALHLSP Sbjct: 124 EVLGGAIAISPDIDHELALSRLCGERAAADVLTAREFEVMQMLLAERTTEEIASALHLSP 183 Query: 181 KTVANLHSLIKDKLGVGTDIELVRLALRQGILT 213 KT+ANLHSLIKDKLGVGTDIELVRLALRQG+LT Sbjct: 184 KTIANLHSLIKDKLGVGTDIELVRLALRQGLLT 216 >ref|YP_002362567.1| LuxR family transcriptional regulator [Methylocella silvestris BL2] gb|ACK51205.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 223 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 150/212 (70%), Positives = 174/212 (82%), Gaps = 1/212 (0%) Query: 1 MSHAARTIMLVDDHAVVREGYRAMLQKQPDLCVVAEASDGVEAYRLYKETGPDLVIMDLS 60 MS AA TI+LVDDHA+VREGYRA+LQ+QP L VVAEA DG EAYRL+K+ PDLVIMDL+ Sbjct: 1 MSGAA-TILLVDDHAIVREGYRALLQQQPRLKVVAEAGDGAEAYRLFKQVKPDLVIMDLT 59 Query: 61 MPGIGGIEAIRRLRQWDRRAKILVFTMHQNAAFAVQAIRAGASGYVTKTSPPETLVHAVM 120 MPG+GG+EA++R+RQWD A+ILVFTMHQNAAFAVQAIRAGA GYVTK+SPPE L+ Sbjct: 60 MPGLGGVEAVKRIRQWDPAARILVFTMHQNAAFAVQAIRAGAKGYVTKSSPPEALIRGAF 119 Query: 121 DALSGKIAISPDIDHELALSHLAGERKAADLLTAREFEVLRMLLAENTTEEIAEALHLSP 180 D L G+IA+S DIDHELALS + A D+LT REFE+LR+LLAE +TE IA L LSP Sbjct: 120 DVLQGRIALSADIDHELALSRVTETPTATDVLTPREFEILRLLLAEKSTEAIAAILGLSP 179 Query: 181 KTVANLHSLIKDKLGVGTDIELVRLALRQGIL 212 KTVAN LIK KLGV +DIELV +ALRQGIL Sbjct: 180 KTVANTRYLIKAKLGVASDIELVLVALRQGIL 211 >ref|ZP_08536183.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain containing protein [Methylophaga aminisulfidivorans MP] gb|EGL55652.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain containing protein [Methylophaga aminisulfidivorans MP] Length = 221 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 121/217 (55%), Positives = 166/217 (76%), Gaps = 1/217 (0%) Query: 1 MSHAARTIMLVDDHAVVREGYRAMLQKQPDLCVVAEASDGVEAYRLYKETGPDLVIMDLS 60 MS++ R IMLVDDHA+VREGYRA+LQKQ + V+AEA DG EAY LYKE PD+V+MD+S Sbjct: 1 MSNSIR-IMLVDDHAIVREGYRALLQKQANFEVIAEACDGAEAYSLYKEHRPDVVVMDIS 59 Query: 61 MPGIGGIEAIRRLRQWDRRAKILVFTMHQNAAFAVQAIRAGASGYVTKTSPPETLVHAVM 120 +PG G++AI R+RQ+D +AK+LVF+MHQN +FA+QA RAGA GY+TK+S PE L+ A++ Sbjct: 60 LPGQSGLKAIERIRQFDNQAKVLVFSMHQNPSFALQATRAGALGYITKSSDPEVLIRAIV 119 Query: 121 DALSGKIAISPDIDHELALSHLAGERKAADLLTAREFEVLRMLLAENTTEEIAEALHLSP 180 + K +S DI LA+ L ++ A D LT REFE+LR+LL ++++IA+ L++SP Sbjct: 120 QISNNKHTLSADIAQALAMEKLGQDQSAIDELTVREFEILRLLLEAKSSQDIADLLNISP 179 Query: 181 KTVANLHSLIKDKLGVGTDIELVRLALRQGILTQLDL 217 KTVAN H +IK KLGV +DIEL RLA++ ++ L+L Sbjct: 180 KTVANSHYIIKKKLGVNSDIELTRLAIKMNLVNLLEL 216 >ref|ZP_05104586.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gb|EEF79155.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 226 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 160/211 (75%) Query: 7 TIMLVDDHAVVREGYRAMLQKQPDLCVVAEASDGVEAYRLYKETGPDLVIMDLSMPGIGG 66 TIMLVDDHA+VREGYR++LQKQ +L V+AEA DG EAY YK+ PD+V+MD+S+PG G Sbjct: 6 TIMLVDDHAIVREGYRSLLQKQDNLEVIAEACDGTEAYSQYKKYQPDIVVMDISLPGQSG 65 Query: 67 IEAIRRLRQWDRRAKILVFTMHQNAAFAVQAIRAGASGYVTKTSPPETLVHAVMDALSGK 126 ++AI R+RQ+D +AKILVF+MHQN +FA+QA RAGA GY+TK+S PE L+ A+ + K Sbjct: 66 LKAIERIRQFDAKAKILVFSMHQNPSFALQATRAGALGYITKSSDPEDLIRAIAEVAKNK 125 Query: 127 IAISPDIDHELALSHLAGERKAADLLTAREFEVLRMLLAENTTEEIAEALHLSPKTVANL 186 +S DI LA+ L E+ A D LT REFE+LR+L+ + ++IAE L++SPKTV+N Sbjct: 126 HTLSADIAQALAMEKLGQEQSALDELTVREFEILRLLVDAKSNQDIAELLNISPKTVSNS 185 Query: 187 HSLIKDKLGVGTDIELVRLALRQGILTQLDL 217 H +IK KLGV +DIEL RLA++ ++ LDL Sbjct: 186 HYIIKKKLGVSSDIELTRLAIKMNLVNLLDL 216