BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0044.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237952.1| transcriptional regulator [Bradyrhizobium sp... 261 5e-68 ref|NP_770673.1| transcriptional regulator [Bradyrhizobium japon... 151 5e-35 ref|ZP_02732684.1| transcriptional regulator, TetR family protei... 104 6e-21 ref|YP_004494899.1| TetR family transcriptional regulator [Amyco... 102 4e-20 gb|ABO15839.1| TetR family regulator [Streptomyces vitaminophilus] 100 2e-19 >ref|YP_001237952.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34046.1| transcriptional regulator, TetR family [Bradyrhizobium sp. BTAi1] Length = 201 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 132/201 (65%), Positives = 162/201 (80%) Query: 1 MPKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQ 60 MPK+KP T+A RR+EIL+AAE CFARQGFHQTTI DVI + GLSAGCIYGHF K+ELIQ Sbjct: 1 MPKLKPATMAARRDEILRAAEACFARQGFHQTTISDVIAEVGLSAGCIYGHFASKDELIQ 60 Query: 61 AIGESRHGRDSALLALKDPSDDVLQSLRSIARTFLGDLQREEGLRARRVALQLWAEALRD 120 AIGE RHGRD+ALLA S D L LR+IAR L D+Q+EEGLR+RR+ALQLWAEALRD Sbjct: 61 AIGERRHGRDAALLAAARDSADPLDGLRAIARASLVDMQKEEGLRSRRIALQLWAEALRD 120 Query: 121 DVVRDQVVSGIRQPIALIVDLLRRGQKSGAIDPHLQPRGAARAMVAMFQGIVLQRLWGET 180 + + +QVV G+R+P+A+I +LL+RGQ+ G +D + PR AR MVAMFQG VLQRLWGE Sbjct: 121 EAICEQVVDGVRKPVAVITELLQRGQRLGVVDRAVNPRSIARTMVAMFQGFVLQRLWGEP 180 Query: 181 VSTAEAMHAFDIFLAGLAARR 201 S+++AM AF+ L+G+A RR Sbjct: 181 FSSSDAMTAFEALLSGIATRR 201 >ref|NP_770673.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49298.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 114/197 (57%) Query: 1 MPKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQ 60 MPK+ + RR +IL+AA CFA GFHQT + D++K+SGLS G +Y +F K++LI+ Sbjct: 1 MPKISDKQREGRRRQILEAALACFAENGFHQTGMADIVKRSGLSHGAVYLYFRSKDDLIE 60 Query: 61 AIGESRHGRDSALLALKDPSDDVLQSLRSIARTFLGDLQREEGLRARRVALQLWAEALRD 120 A+ + RH R++ L ++ S D ++ L ++ R + L G RRV + WAEALR+ Sbjct: 61 ALADDRHRREAVLNSVAQGSGDPIEGLHALVRVYAQWLTDPAGEARRRVGIHGWAEALRN 120 Query: 121 DVVRDQVVSGIRQPIALIVDLLRRGQKSGAIDPHLQPRGAARAMVAMFQGIVLQRLWGET 180 VR VV GI P ALIV L+ R Q G I L AR ++A+FQG VLQ+ WGE Sbjct: 121 RRVRTSVVEGIEMPRALIVALVERAQHDGLIRRDLGADAIARVLIAIFQGFVLQKCWGED 180 Query: 181 VSTAEAMHAFDIFLAGL 197 M A D + G Sbjct: 181 FDVDACMAAVDGVIDGF 197 >ref|ZP_02732684.1| transcriptional regulator, TetR family protein [Gemmata obscuriglobus UQM 2246] Length = 200 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%) Query: 12 RREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQAI-GESRHGRD 70 RR++IL AAE CFAR GFHQT++Q+V +++GLS G +Y +F K+++I A+ GE+R Sbjct: 13 RRKQILAAAERCFARHGFHQTSMQEVCREAGLSPGSVYRYFRSKDDIIVAMAGENRQD-T 71 Query: 71 SALLALKDPSDDVLQSLRSIARTFLGDLQREEGLRARRVALQLWAEALRDDVVRDQVVSG 130 A A + DV+ L +A LG + + + AEA+R+ V + V Sbjct: 72 HARFATAAANPDVIAGLLQLAEDVLGQINDPA---CGPLHFECTAEAMRNPRVAEVVRRD 128 Query: 131 IRQPIALIVDLLRRGQKSGAIDPHLQPRGAARAMVAMFQGIVLQRLWGETVSTA 184 ++ +A +V+LLRRGQ+ G IDP L PR AA ++A+ G+ ++ + A Sbjct: 129 DQEIVAGMVELLRRGQEGGHIDPALDPRRAAETLIALADGLTWRKFLDPRIDLA 182 >ref|YP_004494899.1| TetR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gb|AEF42099.1| Transcriptional regulator, TetR family [Amycolicicoccus subflavus DQS3-9A1] Length = 208 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 6/179 (3%) Query: 1 MPKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQ 60 MP+V E L+ RRE+IL AA CFAR GFH T++QD++ ++ LSAG +Y +F GK +LI+ Sbjct: 1 MPRVSEEHLSARREQILSAAWRCFARNGFHMTSMQDILSEADLSAGAVYRYFPGKLDLIK 60 Query: 61 AIGES-RHGRDSALLALK--DPSDDVLQSLRSIARTFLGDL-QREEGLRARRVALQLWAE 116 A E +G +A L +P ++ A T L + + E L RVA+ +W+E Sbjct: 61 ATAERVSYGLTAAFDTLDAVEPVPPPAEAFGFFASTMLQYIASQTEDL--TRVAMHVWSE 118 Query: 117 ALRDDVVRDQVVSGIRQPIALIVDLLRRGQKSGAIDPHLQPRGAARAMVAMFQGIVLQR 175 ALR+ + DQV + +A ++ R + +G I + R A+ M + G ++QR Sbjct: 119 ALREKEISDQVKTVGTAVLARWMNTASRWKDAGHIAQTAEVRDVAKVMYSAMVGFIVQR 177 >gb|ABO15839.1| TetR family regulator [Streptomyces vitaminophilus] Length = 206 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 12/188 (6%) Query: 1 MPKVKPETLAIRREEILQAAEICFARQGFHQTTIQDVIKQSGLSAGCIYGHFTGKEELIQ 60 MP+V E RR++I+ AA C GFHQT++QDVI +SGLSAG +Y +FTGKEELI+ Sbjct: 1 MPRVSEEHRVARRQQIIDAAHRCIVENGFHQTSMQDVINESGLSAGAVYRYFTGKEELIR 60 Query: 61 AIGE--SRHGRDS-ALLALKDPSDDVLQSLRSIARTFLGDLQREEGLRARRVALQLWAEA 117 A+ E S H ++ A + + PS Q+L + + DL A R+A+Q+W EA Sbjct: 61 AVAEKASVHFAEAMAKVVSEHPSLSWDQALARLLSGLMSDLDESRAGTA-RLAVQIWGEA 119 Query: 118 LRDDVVRD----QVVSGIRQPIALIVDLLRRGQKSGAIDPHLQPRGAARAMVAMFQGIVL 173 RD VV + +V+ R+ +L+V L Q +G I ++A+++ G ++ Sbjct: 120 QRDPVVAEAALGALVAAQRRMHSLVVQL----QDTGRIPKSGDAGQISQALLSFLLGCIV 175 Query: 174 QRLWGETV 181 Q + E V Sbjct: 176 QSMLMEDV 183