BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0039.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002287899.1| inner-membrane translocator [Oligotropha car... 434 e-120 ref|ZP_07025384.1| inner-membrane translocator [Afipia sp. 1NLS2... 433 e-119 ref|YP_578041.1| inner-membrane translocator [Nitrobacter hambur... 422 e-116 ref|ZP_08628808.1| putative urea/short-chain amide transport sys... 419 e-115 ref|YP_004416669.1| inner-membrane translocator [Pusillimonas sp... 320 2e-85 >ref|YP_002287899.1| inner-membrane translocator [Oligotropha carboxidovorans OM5] ref|YP_004633981.1| high-affinity branched-chain amino acid ABC transporter permease LivH [Oligotropha carboxidovorans OM5] gb|ACI92034.1| inner-membrane translocator [Oligotropha carboxidovorans OM5] gb|AEI04110.1| ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH [Oligotropha carboxidovorans OM4] gb|AEI07740.1| ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH [Oligotropha carboxidovorans OM5] Length = 291 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 240/290 (82%), Positives = 261/290 (90%) Query: 1 MINWPNFVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYT 60 MINWPNFVSQLFNGL LGALLALISSGLTIIYGTLGVLNLAHGAMFM+GGYAGYV Y+YT Sbjct: 1 MINWPNFVSQLFNGLVLGALLALISSGLTIIYGTLGVLNLAHGAMFMLGGYAGYVAYTYT 60 Query: 61 GSFILAVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQS 120 SFI AV+ GSLFVM GV +ER+IIR+FY RP EDQLLVTFG+GIC VE+VR F S S Sbjct: 61 DSFIAAVLGGSLFVMVAGVLIERVIIRYFYGRPDEDQLLVTFGIGICIVELVRFFFGSLS 120 Query: 121 QVVPPPALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVM 180 VPPP + GITSLGF++YPTYRLA+VGI+ VAL +L+L+LYRTR+GMIVRAGIEDSVM Sbjct: 121 LTVPPPKIFSGITSLGFMYYPTYRLALVGIITVALLSLYLVLYRTRIGMIVRAGIEDSVM 180 Query: 181 VDSLGINVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSF 240 V +LGIN+YRVFMIVFGIGAMAAGFAGI NAPVVSLTP +GD ILV+TFVVVVIGGVGSF Sbjct: 181 VSTLGINIYRVFMIVFGIGAMAAGFAGIANAPVVSLTPDMGDAILVQTFVVVVIGGVGSF 240 Query: 241 PGAILGGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQGR 290 PGAILGGLIAGEIISITSM NPGYAYVMLFAAMTLVLVLRPHGL GTQ R Sbjct: 241 PGAILGGLIAGEIISITSMINPGYAYVMLFAAMTLVLVLRPHGLFGTQSR 290 >ref|ZP_07025384.1| inner-membrane translocator [Afipia sp. 1NLS2] gb|EFI52526.1| inner-membrane translocator [Afipia sp. 1NLS2] Length = 291 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 240/290 (82%), Positives = 263/290 (90%) Query: 1 MINWPNFVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYT 60 MINW NFVSQLFNGL LGALLALISSGLTIIYGTLGVLNLAHGAMFM+GGYAGYV ++YT Sbjct: 1 MINWANFVSQLFNGLVLGALLALISSGLTIIYGTLGVLNLAHGAMFMLGGYAGYVAFTYT 60 Query: 61 GSFILAVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQS 120 GSFI+AV+AGSLFVM GV MER+IIR+FY RP EDQLLVTFG+GIC VEIVR F S S Sbjct: 61 GSFIIAVLAGSLFVMLAGVVMERVIIRYFYGRPDEDQLLVTFGIGICIVEIVRFFFGSLS 120 Query: 121 QVVPPPALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVM 180 VP P + GITSLGF++YPTYRLA+VGIV VAL AL+L+LYRTRLGMIVRAGIEDS+M Sbjct: 121 LTVPAPKIFSGITSLGFMYYPTYRLALVGIVTVALLALYLVLYRTRLGMIVRAGIEDSMM 180 Query: 181 VDSLGINVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSF 240 V +LGINV+RVFMIVFGIGAMAAGFAGI+NAPVVSLTP +G+ ILV+TFVV+VIGGVGSF Sbjct: 181 VSTLGINVFRVFMIVFGIGAMAAGFAGIVNAPVVSLTPDMGEAILVQTFVVIVIGGVGSF 240 Query: 241 PGAILGGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQGR 290 PGAILGGLIAGEIISITSM NPGYAYVMLFAAMTLVLVLRPHGL G+Q R Sbjct: 241 PGAILGGLIAGEIISITSMINPGYAYVMLFAAMTLVLVLRPHGLFGSQSR 290 >ref|YP_578041.1| inner-membrane translocator [Nitrobacter hamburgensis X14] gb|ABE63581.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Nitrobacter hamburgensis X14] Length = 291 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/291 (83%), Positives = 265/291 (91%) Query: 1 MINWPNFVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYT 60 MINW NFVSQLFNGL LGALLALISSGLTIIYGTLGVLNLAHGAMFM+GGYAGYV Y+YT Sbjct: 1 MINWQNFVSQLFNGLVLGALLALISSGLTIIYGTLGVLNLAHGAMFMLGGYAGYVAYTYT 60 Query: 61 GSFILAVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQS 120 SFI+AVIAGSLFVM +GVAMERIIIR FY RP EDQLLVTFGLGICFVE+VRL F S S Sbjct: 61 DSFIVAVIAGSLFVMVVGVAMERIIIRRFYGRPDEDQLLVTFGLGICFVEVVRLFFGSLS 120 Query: 121 QVVPPPALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVM 180 VP P + GITSLGF+FYPTYRLA+V I+AVAL LFL+LYRTRLG+IVRAGIEDSVM Sbjct: 121 LTVPTPTIFAGITSLGFMFYPTYRLALVVIIAVALLVLFLVLYRTRLGLIVRAGIEDSVM 180 Query: 181 VDSLGINVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSF 240 V SLGI+VYRVFM+VFGIGAMAAGFAGI+NAPVVSLTP +G+ ILV+TFVVVVIGGVGSF Sbjct: 181 VSSLGIDVYRVFMVVFGIGAMAAGFAGIVNAPVVSLTPDMGEAILVQTFVVVVIGGVGSF 240 Query: 241 PGAILGGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQGRE 291 PGAI+GGLIAGEIISIT+M NPGYAY+MLFAAMTLVL+LRPHGLLG QGR Sbjct: 241 PGAIIGGLIAGEIISITAMINPGYAYIMLFAAMTLVLLLRPHGLLGAQGRS 291 >ref|ZP_08628808.1| putative urea/short-chain amide transport system permease [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08167.1| putative urea/short-chain amide transport system permease [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 230/291 (79%), Positives = 261/291 (89%) Query: 1 MINWPNFVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYT 60 MINW NF+SQ FNGL LGALLALISSGLTIIYGTLGVLNLAHGAMFM+GGYAG+ YSYT Sbjct: 1 MINWANFISQCFNGLVLGALLALISSGLTIIYGTLGVLNLAHGAMFMLGGYAGWFAYSYT 60 Query: 61 GSFILAVIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQS 120 GSF++AV+ GSLFVM +GVA+ER IIR+FY RPHEDQ+LVTFGL + FVE VR F S S Sbjct: 61 GSFLVAVVVGSLFVMLVGVAVERGIIRYFYSRPHEDQILVTFGLSVVFVEAVRFAFGSLS 120 Query: 121 QVVPPPALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVM 180 + VPPP+ L GIT LG + YPTYRLA++GIVAVAL L+++LYRTR+GMIVRAGIEDS M Sbjct: 121 KSVPPPSFLVGITDLGLMIYPTYRLALLGIVAVALIVLYIVLYRTRIGMIVRAGIEDSTM 180 Query: 181 VDSLGINVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSF 240 VD+LGI+VY+VFM+VFGIGAMAAGFAGI+NAPVVS+ P VG+ ILV+TFVVVVIGGVGSF Sbjct: 181 VDALGIDVYKVFMLVFGIGAMAAGFAGIVNAPVVSIAPDVGEAILVQTFVVVVIGGVGSF 240 Query: 241 PGAILGGLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQGRE 291 PGAI+GGLIAGEIISITSMFNPGY+YVMLF AMTLVLVLRP+GLLGT GRE Sbjct: 241 PGAIIGGLIAGEIISITSMFNPGYSYVMLFVAMTLVLVLRPYGLLGTAGRE 291 >ref|YP_004416669.1| inner-membrane translocator [Pusillimonas sp. T7-7] gb|AEC20045.1| inner-membrane translocator [Pusillimonas sp. T7-7] Length = 291 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/285 (62%), Positives = 229/285 (80%) Query: 7 FVSQLFNGLALGALLALISSGLTIIYGTLGVLNLAHGAMFMIGGYAGYVTYSYTGSFILA 66 F+SQLFNGLA G LLALIS+GLTIIYGTLGV+N AHGA+F++G YAG+ Y T SF++A Sbjct: 7 FLSQLFNGLATGLLLALISTGLTIIYGTLGVVNFAHGALFVVGSYAGFTAYGMTDSFLIA 66 Query: 67 VIAGSLFVMALGVAMERIIIRHFYHRPHEDQLLVTFGLGICFVEIVRLIFTSQSQVVPPP 126 ++AGSL + +G+ +ER ++R +Y RP EDQ+LVTFG+GI VE+VR I+ S +P P Sbjct: 67 IVAGSLVALVVGLIIERGLMRQYYGRPPEDQILVTFGIGIILVELVRSIYGGISLSIPTP 126 Query: 127 ALLQGITSLGFLFYPTYRLAVVGIVAVALGALFLILYRTRLGMIVRAGIEDSVMVDSLGI 186 QGI +G L YP YRL +GI A L L+ +LYRT LG+IVRAGIED+ MV++LGI Sbjct: 127 EWGQGIAHIGSLVYPLYRLQALGIAAATLALLYYVLYRTSLGLIVRAGIEDAQMVNALGI 186 Query: 187 NVYRVFMIVFGIGAMAAGFAGIINAPVVSLTPGVGDDILVETFVVVVIGGVGSFPGAILG 246 NV R F++VFGIGAMAAG+AG+I++P+V+L+P +G ILV++FVVVVIGGVGSFPGAI+G Sbjct: 187 NVKRTFLLVFGIGAMAAGYAGVIDSPIVTLSPDMGHRILVDSFVVVVIGGVGSFPGAIVG 246 Query: 247 GLIAGEIISITSMFNPGYAYVMLFAAMTLVLVLRPHGLLGTQGRE 291 G+IAGEI+S+TSMFNP Y++VMLF M LVL+ RP GL+G +GRE Sbjct: 247 GIIAGEILSLTSMFNPAYSHVMLFVVMALVLIFRPQGLMGQEGRE 291