BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0035.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobi... 643 0.0 ref|YP_001243357.1| peptide chain release factor 1 [Bradyrhizobi... 641 0.0 ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium ... 633 e-179 ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudom... 627 e-177 ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomona... 624 e-177 >ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278] emb|CAL74508.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278] Length = 361 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/346 (91%), Positives = 332/346 (95%) Query: 2 LPEAKLDVLLAHHASLEAELLGEVKSERYVQITRELAELNPLIDAVKLYRSARSELADTE 61 LPEAKLDVLLAHHASLEAELLG+V S+RYVQITRELAELNPLIDAVK YR+ ELADTE Sbjct: 4 LPEAKLDVLLAHHASLEAELLGQVNSDRYVQITRELAELNPLIDAVKAYRAGVKELADTE 63 Query: 62 AMLADAGTDAEMRSMAEAELETLQARLGELEQQIRIALLPKDAMDDRNVMLEIRAGTGGD 121 A++AD TDAEMR+MAE+E + L AR GELEQ+IRIALLPKDAMDDRNV+LEIRAGTGGD Sbjct: 64 ALIADPDTDAEMRAMAESERDELVARRGELEQKIRIALLPKDAMDDRNVVLEIRAGTGGD 123 Query: 122 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 181 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH Sbjct: 124 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 183 Query: 182 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKDTDLRIETMRAGGAGGQHVNKTESA 241 RVQRVPDTETQGRIHTSAATVAVLPE+EDVDVDIK DLRIETMRA GAGGQHVNKTESA Sbjct: 184 RVQRVPDTETQGRIHTSAATVAVLPEIEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESA 243 Query: 242 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVEAARSADRKEKVGSGDR 301 IRITH+PTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ+V+AARSA+RKEKVGSGDR Sbjct: 244 IRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQKVDAARSAERKEKVGSGDR 303 Query: 302 AERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 347 +ERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGEL+DALTTEH Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTEH 349 >ref|YP_001243357.1| peptide chain release factor 1 [Bradyrhizobium sp. BTAi1] gb|ABQ39451.1| bacterial peptide chain release factor 1 (bRF-1) [Bradyrhizobium sp. BTAi1] Length = 361 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/346 (91%), Positives = 332/346 (95%) Query: 2 LPEAKLDVLLAHHASLEAELLGEVKSERYVQITRELAELNPLIDAVKLYRSARSELADTE 61 LPEAKLDVLLAHHASLEAELLG+V S+RYVQITRELAELNPLI+AVK YR+ ELADTE Sbjct: 4 LPEAKLDVLLAHHASLEAELLGQVNSDRYVQITRELAELNPLIEAVKAYRAGVKELADTE 63 Query: 62 AMLADAGTDAEMRSMAEAELETLQARLGELEQQIRIALLPKDAMDDRNVMLEIRAGTGGD 121 A++AD TDAEMR+MAEAE + L AR GELEQ+IR+ALLPKDAMDDRNV+LEIRAGTGGD Sbjct: 64 ALIADPATDAEMRAMAEAERDELIARRGELEQKIRVALLPKDAMDDRNVVLEIRAGTGGD 123 Query: 122 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 181 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH Sbjct: 124 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 183 Query: 182 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKDTDLRIETMRAGGAGGQHVNKTESA 241 RVQRVPDTETQGRIHTSAATVAVLPEVE+VDVDIK DLRIETMRA GAGGQHVNKTESA Sbjct: 184 RVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKQDDLRIETMRAQGAGGQHVNKTESA 243 Query: 242 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVEAARSADRKEKVGSGDR 301 IRITH+PTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ+V+AARSA+RKEKVGSGDR Sbjct: 244 IRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQKVDAARSAERKEKVGSGDR 303 Query: 302 AERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 347 +ERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 349 >ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110] sp|Q89XT9.1|RF1_BRAJA RecName: Full=Peptide chain release factor 1; Short=RF-1 dbj|BAC45483.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 311/346 (89%), Positives = 329/346 (95%) Query: 2 LPEAKLDVLLAHHASLEAELLGEVKSERYVQITRELAELNPLIDAVKLYRSARSELADTE 61 LPEAKLDVLLAHHASLEAE LG++ SERYVQITRELAE+ PLI+AVK YRSA ELADTE Sbjct: 4 LPEAKLDVLLAHHASLEAESLGQLASERYVQITRELAEITPLIEAVKTYRSAVKELADTE 63 Query: 62 AMLADAGTDAEMRSMAEAELETLQARLGELEQQIRIALLPKDAMDDRNVMLEIRAGTGGD 121 A++AD TDAEMR MAEAE + L R+ +L Q+IR+ALLPKDAMDDRNV+LEIRAGTGGD Sbjct: 64 ALIADPATDAEMRGMAEAERDELAPRIEDLVQKIRVALLPKDAMDDRNVVLEIRAGTGGD 123 Query: 122 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 181 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAF+KLKFESGVH Sbjct: 124 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVH 183 Query: 182 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKDTDLRIETMRAGGAGGQHVNKTESA 241 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIK+ DLRIETMRA GAGGQHVNKTESA Sbjct: 184 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKTESA 243 Query: 242 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVEAARSADRKEKVGSGDR 301 IRITH+PTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRV+AARSA+RKEKVGSGDR Sbjct: 244 IRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVDAARSAERKEKVGSGDR 303 Query: 302 AERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 347 +ERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 349 >ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1] gb|ADU42324.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1] Length = 361 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 309/358 (86%), Positives = 332/358 (92%) Query: 2 LPEAKLDVLLAHHASLEAELLGEVKSERYVQITRELAELNPLIDAVKLYRSARSELADTE 61 LPEAKLDVLLAHHA+LEA+L+ +V +E YV+ITREL+ELNPL++AVK YR R EL + + Sbjct: 4 LPEAKLDVLLAHHAALEAQLMAQVGAEDYVRITRELSELNPLVEAVKSYRQVRDELGEID 63 Query: 62 AMLADAGTDAEMRSMAEAELETLQARLGELEQQIRIALLPKDAMDDRNVMLEIRAGTGGD 121 +L D T+ EMR+MAEAE + L A EL QQIRIALLPKDAMD+RNVMLEIRAGTGGD Sbjct: 64 ELLEDPATEPEMRAMAEAERDALDAHRDELIQQIRIALLPKDAMDERNVMLEIRAGTGGD 123 Query: 122 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 181 EASLFAGDLFRMYE+FA+LQGW VEVISASEGTVGG+KEIIAEV+GRGAFAKLKFESGVH Sbjct: 124 EASLFAGDLFRMYEKFAALQGWSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVH 183 Query: 182 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKDTDLRIETMRAGGAGGQHVNKTESA 241 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIK DLRIETMRA GAGGQHVNKTESA Sbjct: 184 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQEDLRIETMRAQGAGGQHVNKTESA 243 Query: 242 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVEAARSADRKEKVGSGDR 301 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRV+AARSA+RKEKVGSGDR Sbjct: 244 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVDAARSAERKEKVGSGDR 303 Query: 302 AERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQGAAA 359 +ERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLA QGAAA Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAEQGAAA 361 >ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB5] sp|Q13F02.1|RF1_RHOPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gb|ABE37337.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas palustris BisB5] Length = 361 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 306/358 (85%), Positives = 334/358 (93%) Query: 2 LPEAKLDVLLAHHASLEAELLGEVKSERYVQITRELAELNPLIDAVKLYRSARSELADTE 61 LPEAKLDVLLAHHASLEA+LLGEV + YV+ITREL+ELNPL++AVK YR R EL D + Sbjct: 4 LPEAKLDVLLAHHASLEAQLLGEVGASEYVRITRELSELNPLVEAVKAYREVRDELGDVD 63 Query: 62 AMLADAGTDAEMRSMAEAELETLQARLGELEQQIRIALLPKDAMDDRNVMLEIRAGTGGD 121 A+L D TD+EMR+MAEAE + L A EL Q+IR+ALLPKDAMD+RNVMLEIRAGTGGD Sbjct: 64 ALLEDPDTDSEMRAMAEAERDALDAHRAELIQEIRVALLPKDAMDERNVMLEIRAGTGGD 123 Query: 122 EASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFESGVH 181 EASLFAGDLFRMYE+FA+LQGW VEVISASEG++GG+KEIIAEV+GRGAFAKLKFESGVH Sbjct: 124 EASLFAGDLFRMYEKFAALQGWSVEVISASEGSMGGFKEIIAEVKGRGAFAKLKFESGVH 183 Query: 182 RVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKDTDLRIETMRAGGAGGQHVNKTESA 241 RVQRVPDTETQGRIHTSAATVAVLPEVE+VDVDIK DL+I+TMRA GAGGQHVNKTESA Sbjct: 184 RVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKTESA 243 Query: 242 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVEAARSADRKEKVGSGDR 301 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAE+QR++AARSA+RKEKVGSGDR Sbjct: 244 IRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDR 303 Query: 302 AERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQGAAA 359 +ERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQG AA Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQGHAA 361