BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0133.0028.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241666.1| cytochrome c-552 [Bradyrhizobium sp. BTAi1] ...   132   1e-29
ref|NP_772768.1| cytochrome c552 [Bradyrhizobium japonicum USDA ...   130   8e-29
ref|YP_001207226.1| cytochrome c-552 (cytochrome c552) [Bradyrhi...   126   9e-28
ref|YP_577210.1| hypothetical protein Nham_1945 [Nitrobacter ham...   114   4e-24
pir||S30512 cytochrome c-type - Bradyrhizobium japonicum >gi|244...   113   8e-24

>ref|YP_001241666.1| cytochrome c-552 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37760.1| Cytochrome c-552 precursor [Bradyrhizobium sp. BTAi1]
          Length = 103

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 71/80 (88%)

Query: 24  DANHGAELAKRWCATCHVVSDDQKQAVADVPPFAAVARNPDFSPEKLAFFLLDPHPKMPN 83
           DA+HGA+LA+RWCA+CH+V   QKQA ADVP FA +A+  DF+PEK+AFFLLDPHPKMP+
Sbjct: 24  DADHGADLARRWCASCHLVEGTQKQASADVPSFAQIAQKADFTPEKVAFFLLDPHPKMPS 83

Query: 84  FPLNRAEAADIAAYVASLRK 103
           FPLNR EAADIAAY+ASLRK
Sbjct: 84  FPLNRLEAADIAAYIASLRK 103


>ref|NP_772768.1| cytochrome c552 [Bradyrhizobium japonicum USDA 110]
 sp|P24059.2|CY552_BRAJA RecName: Full=Cytochrome c-552; AltName: Full=Cytochrome c552;
           Flags: Precursor
 emb|CAA42914.1| cytochrome c552 [Bradyrhizobium japonicum]
 dbj|BAC51393.1| cytochrome c552 [Bradyrhizobium japonicum USDA 110]
 prf||1805233A cytochrome c552
          Length = 104

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 68/79 (86%)

Query: 24  DANHGAELAKRWCATCHVVSDDQKQAVADVPPFAAVARNPDFSPEKLAFFLLDPHPKMPN 83
           DA HGA+LAKRWCA+CHVV++ Q  A ADVP FA+VAR PDFS EKLAFFLLDPHPKMP+
Sbjct: 25  DAGHGADLAKRWCASCHVVANGQAVASADVPSFASVARRPDFSSEKLAFFLLDPHPKMPS 84

Query: 84  FPLNRAEAADIAAYVASLR 102
           FPL+R EA DIAAY+ SLR
Sbjct: 85  FPLSRTEAGDIAAYIGSLR 103


>ref|YP_001207226.1| cytochrome c-552 (cytochrome c552) [Bradyrhizobium sp. ORS 278]
 emb|CAL79009.1| Cytochrome c-552 precursor (Cytochrome c552) [Bradyrhizobium sp.
           ORS 278]
          Length = 104

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 67/77 (87%)

Query: 27  HGAELAKRWCATCHVVSDDQKQAVADVPPFAAVARNPDFSPEKLAFFLLDPHPKMPNFPL 86
           HGA+LA+RWC++CH++   QKQA ADVP FA +A+  DF+PEK+AFFLLDPHPKMP+FPL
Sbjct: 28  HGADLARRWCSSCHLIEGAQKQASADVPSFAEIAQKADFTPEKIAFFLLDPHPKMPSFPL 87

Query: 87  NRAEAADIAAYVASLRK 103
           NR EAADIAAY+ SLRK
Sbjct: 88  NRLEAADIAAYIGSLRK 104


>ref|YP_577210.1| hypothetical protein Nham_1945 [Nitrobacter hamburgensis X14]
 gb|ABE62750.1| hypothetical protein Nham_1945 [Nitrobacter hamburgensis X14]
          Length = 111

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 61/79 (77%)

Query: 24  DANHGAELAKRWCATCHVVSDDQKQAVADVPPFAAVARNPDFSPEKLAFFLLDPHPKMPN 83
           DA+HG  L  RWC +CH+V  DQKQA  D PPFA +A+NPDF   KLAFFLL+PHPKMP+
Sbjct: 33  DADHGRVLVNRWCVSCHLVGTDQKQATTDAPPFATIAKNPDFDAAKLAFFLLEPHPKMPD 92

Query: 84  FPLNRAEAADIAAYVASLR 102
             L+R E +DIAAY+A+L+
Sbjct: 93  MQLSRDETSDIAAYIATLK 111


>pir||S30512 cytochrome c-type - Bradyrhizobium japonicum
 gb|AAB21287.1| cytochrome c552 [Bradyrhizobium japonicum=soybean root nodule
           bacteroids, strain CC705, Peptide, 73 aa]
 prf||1809220A cytochrome c552
          Length = 73

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 65/79 (82%), Gaps = 6/79 (7%)

Query: 23  ADANHGAELAKRWCATCHVVSDDQKQAVADVPPFAAVARNPDFSPEKLAFFLLDPHPKMP 82
           A+A HGA+LAKRWCA+CHVV++ Q QA ADVP FA+ AR PDFSPE     LLDPHPKMP
Sbjct: 1   ANAEHGADLAKRWCASCHVVANGQTQASADVPSFASFAR-PDFSPE-----LLDPHPKMP 54

Query: 83  NFPLNRAEAADIAAYVASL 101
           NFPL+R EA DIAAY+ASL
Sbjct: 55  NFPLSRTEAGDIAAYIASL 73