BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0025.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774795.1| hypothetical protein blr8155 [Bradyrhizobium ja... 558 e-157 ref|YP_001238617.1| putative acyl CooA deshydrogenase [Bradyrhiz... 238 9e-61 ref|NP_521780.1| hypothetical protein RS05205 [Ralstonia solanac... 221 1e-55 ref|YP_001412644.1| acyl-CoA dehydrogenase type 2 [Parvibaculum ... 221 2e-55 ref|ZP_01617749.1| probable transmembrane protein [marine gamma ... 218 2e-54 >ref|NP_774795.1| hypothetical protein blr8155 [Bradyrhizobium japonicum USDA 110] dbj|BAC53420.1| blr8155 [Bradyrhizobium japonicum USDA 110] Length = 389 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 275/382 (71%), Positives = 303/382 (79%), Gaps = 3/382 (0%) Query: 1 MNRPQGVDLVERARALTPLITSEADEIERTRRLTPAVTAALVENGLYRALLPKRFGGAEA 60 MN +G LVERARA+ PLI EADEIERTRRLTPAV +ALVENGLYRALLP+ GGAE Sbjct: 7 MNATRGFGLVERARAIAPLIAGEADEIERTRRLTPAVVSALVENGLYRALLPQSLGGAEV 66 Query: 61 TLDAFMQMQEEIAKADASTAWCLGQCSVCAMTAAYLEPDVADEIFNTAPGILAWGAIAHE 120 ++ FMQM EEIAKADASTAWCLGQC VCAM AA L+ D A EIFNT PGILAWGAIAHE Sbjct: 67 PIEGFMQMLEEIAKADASTAWCLGQCCVCAMIAASLDRDTAHEIFNTQPGILAWGAIAHE 126 Query: 121 VRAEPGGYRASARWDFASGSRQASWLGAHVRVVEADGSPRKRADGSPEIRTILFPMSQAV 180 RA GGYR +ARWDFASGSRQA+WLGAHVR+ ADG RK ADGSPE+RTILFP AV Sbjct: 127 ARAVEGGYRVTARWDFASGSRQANWLGAHVRIASADGVSRKNADGSPEVRTILFPAESAV 186 Query: 181 MYDVWDVIGLKGTGTDSYSVDNLFIPEKFAALRDDPAACREPGPLYKLSTNMVFSMGFAA 240 ++DVW IGL GTGTDSY V +LFIPE+F A RD P+A RE GPLY++ T FS+GFAA Sbjct: 187 LHDVWQAIGLAGTGTDSYEVSDLFIPERFTAFRDVPSALREKGPLYRIGTGSTFSLGFAA 246 Query: 241 TSLGVARAMLDATTELARGKTPQGL--KAMRDNNAVQGQIGRTEASLRAARAYLYTTAHD 298 SLGVARA LDA LARGK Q L AMRDN +VQG IGRTE LRAARAYL+ TA+ Sbjct: 247 VSLGVARATLDAAIALARGK-HQSLAASAMRDNQSVQGLIGRTEGDLRAARAYLHATANA 305 Query: 299 VWSDLVRGDPITEAHRVAIRIASTWTIHQSAAVVDIAYHMSGATAVFAKNPFERRFRDMH 358 +W DL + AHR A+R+A+TWTIHQSA VVD AYHM+GATAVF NPFERRFRDMH Sbjct: 306 MWRDLSATGEFSAAHRSAVRLAATWTIHQSAKVVDAAYHMAGATAVFRSNPFERRFRDMH 365 Query: 359 AIAQQIQARDTQYEDAGKAILA 380 AIAQQIQARDT YED GKAILA Sbjct: 366 AIAQQIQARDTHYEDVGKAILA 387 >ref|YP_001238617.1| putative acyl CooA deshydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ34711.1| putative acyl CooA deshydrogenase [Bradyrhizobium sp. BTAi1] Length = 424 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 220/398 (55%), Gaps = 24/398 (6%) Query: 10 VERARALTPLITSEADEIERTRRLTPAVTAALVENGLYRALLPKRFGGAEATLDAFMQMQ 69 + +ARAL PL+ ++ + + T + V AAL +N ++RA LP+ GG E + Q+ Sbjct: 24 IAQARALKPLLERQSRDTDTTGTIAAPVLAALHDNRIFRATLPRSVGGLELRPEIHAQII 83 Query: 70 EEIAKADASTAWCLGQCSVCAMTAAYLEPDVADEIFNTAPGILAWG--AIAHEVRAEP-- 125 IA+ DAS AWC+ Q + + +AYL P+V IF+ + +G +I A P Sbjct: 84 AAIAEGDASVAWCVAQSACASSISAYLAPEVLHAIFSDPRAVFTFGFASIDPPCLAIPVT 143 Query: 126 GGYRASARWDFASGSRQASWLGAHVRVVEADGSPRKRADGSPEIRTILFPMSQAVMY-DV 184 GG+R + W F S SR A+WLG H R+ +A+G P K A G P RT++F A ++ D Sbjct: 144 GGWRVTGTWSFGSSSRVATWLGGHSRLTDANGVPLKDAAGRPVERTMIFRREDATIHPDT 203 Query: 185 WDVIGLKGTGTDSYSVDNLFIPEKFAA----------LRDDPAACREP-----GPLYKLS 229 WDV+GL+GTG+D+YSV +LF+P + A L +D A EP G LY+ S Sbjct: 204 WDVMGLRGTGSDTYSVTDLFVPAGYGAVPRGRGRDHNLPEDVVAEAEPERREAGLLYRHS 263 Query: 230 TNMVFSMGFAATSLGVARAMLDATTELARGKTPQGLKAMRDNNAVQGQIGRTEASLRAAR 289 ++ G ++ ++G ARAM D +LARGKTP +RD+ +Q ++ + ++ + AA+ Sbjct: 264 MQLIACSGLSSVAIGAARAMFDQFVQLARGKTPSNAIPLRDDGWIQARVAQADSLISAAQ 323 Query: 290 AYLYTTAHDVWSDLVRGDPITEAHRVAIRIASTWTIHQSAAVVDIAYHMSGATAVFAKNP 349 A+L + W I+ R+ IR A T I + +I + +G+TA+F N Sbjct: 324 AWLLQLLREAWEQCATDGAISFPLRIKIRQACTHQIDCARDAANILFKEAGSTALFRHNG 383 Query: 350 FERRFRDMHAIAQQIQARDTQYEDAGKAILAGNLSAPP 387 FE+RFRD+HA++ Q+Q + E AG+ +L PP Sbjct: 384 FEQRFRDIHAVSNQVQGSIARLEAAGQY----HLGLPP 417 >ref|NP_521780.1| hypothetical protein RS05205 [Ralstonia solanacearum GMI1000] emb|CAD17370.1| putative naphthocyclinone hydroxylase transmembrane protein [Ralstonia solanacearum GMI1000] Length = 393 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 202/381 (53%), Gaps = 12/381 (3%) Query: 7 VDLVERARALTPLITSEADEIERTRRLTPAVTAALVENGLYRALLPKRFGGAEATLDAFM 66 ++L++ L P + +++ IE+ R L + L GLYR L P+ FGG E + F Sbjct: 8 IELMQVVEDLAPKLAAKSVFIEQARHLPQEIADELAARGLYRMLTPRSFGGHEVDIMTFA 67 Query: 67 QMQEEIAKADASTAWCLGQCSVCAMTAAYLEPDVADEIFN----TAPGILAWGAIAHEV- 121 + E +A+ADAS AWC A+ AYL D A +F G+ A G A Sbjct: 68 SVIERLARADASAAWCTFISCTSALVGAYLPTDEAARLFADPAVKLAGVYAPGGRATRTE 127 Query: 122 RAEPGGYRASARWDFASGSRQASWLGAHVRVVEADGSPRKRADGSPEIRTILFPMSQAVM 181 R G+ S W++ SGSR A+++ +++ DG P G P +++++F Q + Sbjct: 128 RNGVPGFLVSGHWNWGSGSRNANYIVGGCFIIDDDGKPELTPAGKPNVQSMVFSAEQVTI 187 Query: 182 YDVWDVIGLKGTGTDSYSVDNLFIPEKFAA--LRDDPAACREPGPLYKLSTNMVFSMGFA 239 D W +GL GTG++ +SV+ +F+P A + D P P PLY+ V + A Sbjct: 188 ADTWHSVGLCGTGSNEFSVEGVFVPTSRTASLVVDTPL----PRPLYRFPVFGVLGLSIA 243 Query: 240 ATSLGVARAMLDATTELARGKTPQG-LKAMRDNNAVQGQIGRTEASLRAARAYLYTTAHD 298 A +LG+A +++ +L++ KTPQG + + + + Q I A LRAARA+L+ D Sbjct: 244 AVALGIAHRAIESLIDLSKQKTPQGSTRPLAERSGTQLAIAYCSARLRAARAFLHEVLED 303 Query: 299 VWSDLVRGDPITEAHRVAIRIASTWTIHQSAAVVDIAYHMSGATAVFAKNPFERRFRDMH 358 W+ DPI +HR IR+A+T+ +SA+VVD + ++G +AV+ +P +R RD+H Sbjct: 304 TWAVSKGSDPIAVSHRRDIRLAATFATTESASVVDRMHRLAGGSAVYQASPIQRCLRDIH 363 Query: 359 AIAQQIQARDTQYEDAGKAIL 379 Q I ++ YE AG+ +L Sbjct: 364 VATQHIMVSESTYELAGRLLL 384 >ref|YP_001412644.1| acyl-CoA dehydrogenase type 2 [Parvibaculum lavamentivorans DS-1] gb|ABS62987.1| Acyl-CoA dehydrogenase type 2 domain [Parvibaculum lavamentivorans DS-1] Length = 397 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 202/382 (52%), Gaps = 14/382 (3%) Query: 8 DLVERARALTPLITSEADEIERTRRLTPAVTAALVENGLYRALLPKRFGGAEATLDAFMQ 67 DLV A I + A EIE+ R L + E GLYR +P+ +GG EA ++ Sbjct: 13 DLVAAAEGFAEEIAARAAEIEKNRFLPQDIAQRFAEAGLYRLCVPEAYGGHEAHPGDLVK 72 Query: 68 MQEEIAKADASTAWCLGQCSVCAMTAAYLEPDVADEIFNTAPGILAWGAIA---HEVRA- 123 + E +A+AD S AWC+ + + A +L+P+ A +F P + G A VRA Sbjct: 73 VVERLARADGSAAWCVFIGATSGLVAGFLQPEEAQRVFGD-PLTITAGVFAPRGKAVRAV 131 Query: 124 EPG--GYRASARWDFASGSRQASWLGAHVRVVEADGSPRKRADGSPEIRTILFPMSQAVM 181 E G GYR + RW + SGSR AS++ ++ DG P A+G P+ R ++F + + Sbjct: 132 EKGVEGYRVNGRWQWGSGSRNASYISGGAMILGDDGKPEMAAEGIPQNRMMMFDAADVTL 191 Query: 182 YDVWDVIGLKGTGTDSYSVDNLFIPEKFAA--LRDDPAACREPGPLYKLSTNMVFSMGFA 239 +D WDV GL GTG+ + V +LF+P A + D P P PLY T + +G A Sbjct: 192 HDTWDVSGLCGTGSTDFEVKDLFVPAARAVSLISDKPL----PRPLYCFPTFGLLGIGIA 247 Query: 240 ATSLGVARAMLDATTELARGKTPQG-LKAMRDNNAVQGQIGRTEASLRAARAYLYTTAHD 298 A SLG+AR +D +LA GKTPQG K + Q + + EA R+ARA+L Sbjct: 248 AVSLGLARGSIDTLVDLAGGKTPQGSSKPLALRAKAQLDVSQAEALTRSARAFLMEAIDA 307 Query: 299 VWSDLVRGDPITEAHRVAIRIASTWTIHQSAAVVDIAYHMSGATAVFAKNPFERRFRDMH 358 W V+ IT AHR IR+A+T + +A VD+ Y ++G ++V+ +P +R+FRD+H Sbjct: 308 AWDAAVKEGEITVAHRRDIRLATTHAVQSAARAVDLMYTLAGGSSVYRGSPLQRQFRDVH 367 Query: 359 AIAQQIQARDTQYEDAGKAILA 380 Q + D YE G+ +L Sbjct: 368 VATQHMMVSDATYELTGRLLLG 389 >ref|ZP_01617749.1| probable transmembrane protein [marine gamma proteobacterium HTCC2143] gb|EAW30342.1| probable transmembrane protein [marine gamma proteobacterium HTCC2143] Length = 382 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 198/375 (52%), Gaps = 10/375 (2%) Query: 7 VDLVERARALTPLITSEADEIERTRRLTPAVTAALVENGLYRALLPKRFGGAEATLDAFM 66 + ++E A + I A++IE++RRL + + + GL+R ++P GG E+T M Sbjct: 1 MSVLENAHVIADTIRPRAEDIEKSRRLPNDIAVMMAQAGLFRIMVPTYLGGMESTPMQAM 60 Query: 67 QMQEEIAKADASTAWCLGQCSVCAMTAAYLEPDVADEIFNTAPGILAWGAIAHEVRA--E 124 ++ E IA ADAS WC+ S +T+AYL+ DVA IF I G A +A + Sbjct: 61 EIIETIANADASAGWCVMIASTTGVTSAYLDKDVAARIFGENDTITG-GVFAPMGKATFD 119 Query: 125 PGGYRASARWDFASGSRQASWLGAHVRVVEADGSPRKRADGSPEIRTILFPMSQAVMYDV 184 GGY+ S W++ASGS WL V++ G PR ADG PE R L+P +A + D Sbjct: 120 QGGYQLSGHWNWASGSANCHWLLGGAMVMD-KGKPRLGADGVPETRQFLYPADKASLPDT 178 Query: 185 WDVIGLKGTGTDSYSVDNLFIPEKF--AALRDDPAACREPGPLYKLSTNMVFSMGFAATS 242 W+V GL GTG+ VD LFIP+++ + D P A GPLY + ++G AA S Sbjct: 179 WNVTGLCGTGSGDMVVDELFIPQEYSLSLAADKPVA---EGPLYTFPVFGLLAIGIAAVS 235 Query: 243 LGVARAMLDATTELARGKTPQG-LKAMRDNNAVQGQIGRTEASLRAARAYLYTTAHDVWS 301 LG ARA +D +LAR K QG K + Q Q+ + EA ++ARA+L+ + + Sbjct: 236 LGNARAAIDDLKDLARAKKSQGSSKTIGQRATSQVQLAQAEADFKSARAFLFDSVKIAYG 295 Query: 302 DLVRGDPITEAHRVAIRIASTWTIHQSAAVVDIAYHMSGATAVFAKNPFERRFRDMHAIA 361 I+ A R +R+A+T + +SA + Y ++G ++VF + +RR RD H Sbjct: 296 AAQTDGEISLAMRADVRLAATNAVRRSADITRSMYDLAGGSSVFLNSSLQRRMRDAHVAT 355 Query: 362 QQIQARDTQYEDAGK 376 Q + YE G+ Sbjct: 356 QHMMVSPQTYELIGR 370