BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0133.0012.p         (233 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_484085.1| two component transcriptional regulator [Rhodop...   458   e-127
ref|YP_575793.1| two component transcriptional regulator [Nitrob...   457   e-127
ref|YP_530491.1| two component transcriptional regulator [Rhodop...   456   e-126
ref|YP_316967.1| transcriptional regulatory protein [Nitrobacter...   455   e-126
ref|NP_774784.1| two-component response regulator [Bradyrhizobiu...   454   e-126

>ref|YP_484085.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 ref|YP_567506.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gb|ABD05174.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
 gb|ABE37605.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/232 (97%), Positives = 228/232 (98%)

Query: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60
           MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG
Sbjct: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60

Query: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRGQ 120
           METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRR  
Sbjct: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSA 120

Query: 121 PKDPTAAPKEPDARALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180
           PKDP AAPKE DA+ALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR
Sbjct: 121 PKDPAAAPKETDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180

Query: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232
           NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE
Sbjct: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232


>ref|YP_575793.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gb|ABE61333.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  457 bits (1176), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/232 (97%), Positives = 228/232 (98%)

Query: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60
           MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTS PDLAILDIKMPRMDG
Sbjct: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAILDIKMPRMDG 60

Query: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRGQ 120
           METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRR  
Sbjct: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRAC 120

Query: 121 PKDPTAAPKEPDARALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180
           PKDPTAAPKE DA+ALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR
Sbjct: 121 PKDPTAAPKESDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180

Query: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232
           NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE
Sbjct: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232


>ref|YP_530491.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD86172.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 233

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/232 (97%), Positives = 227/232 (97%)

Query: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60
           MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG
Sbjct: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60

Query: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRGQ 120
           METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRR  
Sbjct: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRAA 120

Query: 121 PKDPTAAPKEPDARALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180
           PKDP A PKE DA+ALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR
Sbjct: 121 PKDPAAVPKETDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180

Query: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232
           NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE
Sbjct: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232


>ref|YP_316967.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA03615.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 233

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/232 (97%), Positives = 227/232 (97%)

Query: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60
           MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTS PDLAILDIKMPRMDG
Sbjct: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAILDIKMPRMDG 60

Query: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRGQ 120
           METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRR  
Sbjct: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRAC 120

Query: 121 PKDPTAAPKEPDARALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180
           PKDP AAPKE DA+ALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR
Sbjct: 121 PKDPAAAPKESDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180

Query: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232
           NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE
Sbjct: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKE 232


>ref|NP_774784.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC53409.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/233 (96%), Positives = 228/233 (97%)

Query: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAILDIKMPRMDG 60
           MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRT+ PDLAILDIKMPRMDG
Sbjct: 1   MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTQPDLAILDIKMPRMDG 60

Query: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRGQ 120
           METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRR  
Sbjct: 61  METLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSA 120

Query: 121 PKDPTAAPKEPDARALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180
           PKDPT APKE DA+ALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR
Sbjct: 121 PKDPTVAPKENDAKALDRGLLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSR 180

Query: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFEMIETLYGVGYRFKEA 233
           NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVD++FEMIETLYGVGYRFKEA
Sbjct: 181 NALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDNEFEMIETLYGVGYRFKEA 233