BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0001.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774775.1| hypothetical protein blr8135 [Bradyrhizobium ja... 328 6e-88 ref|YP_568093.1| hypothetical protein RPD_0954 [Rhodopseudomonas... 317 1e-84 ref|YP_534700.1| hypothetical protein RPC_4859 [Rhodopseudomonas... 310 1e-82 ref|YP_783722.1| hypothetical protein RPE_4823 [Rhodopseudomonas... 300 1e-79 ref|NP_950059.1| hypothetical protein RPA4725 [Rhodopseudomonas ... 293 2e-77 >ref|NP_774775.1| hypothetical protein blr8135 [Bradyrhizobium japonicum USDA 110] dbj|BAC53400.1| blr8135 [Bradyrhizobium japonicum USDA 110] Length = 268 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 185/264 (70%), Positives = 205/264 (77%), Gaps = 8/264 (3%) Query: 2 RRRVMLAAAAFAGSILVVPAPVSAEGLFDFFFGGSQKQQ-SRQAPPQANFFADPF-GLNQ 59 RRR ML AA A +L PAPVSAEGLFDFFFGG Q+Q+ R+ P QA+ +ADPF G Sbjct: 7 RRRAMLVAATLAAPLLAAPAPVSAEGLFDFFFGGMQQQRPQREVPQQASSYADPFTGQQN 66 Query: 60 QAERQPSAPISAPRVAGSGPAYCVRSCDGKYFPLTMRGNATPAQLCQAFCPASATKVYYG 119 A Q P + GSGPA+CVRSCDGKYFPL MRG A+PAQ+CQAFCPASATK+Y+G Sbjct: 67 PATPQYVPPTRSAAAGGSGPAFCVRSCDGKYFPL-MRGLASPAQMCQAFCPASATKIYFG 125 Query: 120 SHIDSAASTAGERYADSENAFAYRKALRADCTCNGRDPAGLAPVDLALDASLRAGDVIAT 179 S ID AAS GERYADSENAFAYRK LRADCTCNGR+P GLAPVDLALD+SL+AGDVIAT Sbjct: 126 SSIDGAASQTGERYADSENAFAYRKVLRADCTCNGREPVGLAPVDLALDSSLKAGDVIAT 185 Query: 180 TDGLVAYTGIRVGNEQSFDFTPVASYPGLTSAVRARLGEMKVAPVSAE-IAGDAPLPETG 238 +DGLVAYTGIRVGNEQ+ DFTPVASYPGLT+ VRARLGEMKVAPV AE +A DAP E Sbjct: 186 SDGLVAYTGIRVGNEQTADFTPVASYPGLTAQVRARLGEMKVAPVRAETVAADAPAAEIV 245 Query: 239 RDVAPSAPSSVAPKGNGAKPAKRA 262 R+ P PK AKPAKRA Sbjct: 246 RETLPDV---TVPKTQ-AKPAKRA 265 >ref|YP_568093.1| hypothetical protein RPD_0954 [Rhodopseudomonas palustris BisB5] gb|ABE38192.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 267 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 160/247 (64%), Positives = 193/247 (78%), Gaps = 11/247 (4%) Query: 1 MRRRVMLAAAAFAGS-ILVVPAPVSAEGLFDFFFGGS--QKQQSRQAPPQANFFADPFGL 57 ++R LAAA F G+ + ++PAP SA+ + + FGG+ Q+ Q R AP QA+FFADPFGL Sbjct: 10 LQRSAALAAALFVGTPVALIPAPASAQNILEMLFGGAGPQRPQQRSAPAQASFFADPFGL 69 Query: 58 NQQAERQPSAPISAPR--VAGSGPAYCVRSCDGKYFPLTMRGNATPAQLCQAFCPASATK 115 NQQA AP APR +G GPA+CVRSCDGKYFPL RG ATPAQ+CQAFCPA K Sbjct: 70 NQQA-----APPPAPRQVASGGGPAFCVRSCDGKYFPLQARGGATPAQMCQAFCPAGNAK 124 Query: 116 VYYGSHIDSAASTAGERYADSENAFAYRKALRADCTCNGRDPAGLAPVDLALDASLRAGD 175 VYYGSHIDSA ++ G+RYADSENAFAYRKAL+ADCTCNGR+PAGLAPVDL+LD SLR GD Sbjct: 125 VYYGSHIDSATASNGQRYADSENAFAYRKALKADCTCNGRNPAGLAPVDLSLDTSLRPGD 184 Query: 176 VIATTDGLVAYTGIRVGNEQSFDFTPVASYPGLTSAVRARLGEMKVAPVSAEIAGDAPLP 235 ++AT GL AY G+R+G EQ+ DFTPVA YPGLT+ +RARLGEMKVAPV+AE+ + +P Sbjct: 185 IVATATGLAAYNGVRLGAEQTPDFTPVADYPGLTTQIRARLGEMKVAPVNAELIAEQ-VP 243 Query: 236 ETGRDVA 242 RDV+ Sbjct: 244 VVARDVS 250 >ref|YP_534700.1| hypothetical protein RPC_4859 [Rhodopseudomonas palustris BisB18] gb|ABD90381.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 267 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 163/240 (67%), Positives = 192/240 (80%), Gaps = 7/240 (2%) Query: 2 RRRVMLA-AAAFAGSILVVPAPVSAEGLFDFFFGGSQKQ-QSRQAPPQANFFADPFGLNQ 59 RR VMLA A A A + + P AE + FGG Q++ Q R AP Q+NFFADPFGLNQ Sbjct: 11 RRGVMLAIAVAVAMPVALAPRIAVAENFLEALFGGFQQRPQQRSAPTQSNFFADPFGLNQ 70 Query: 60 QAERQPSAPISAPRVAGSGPAYCVRSCDGKYFPLTMRGNATPAQLCQAFCPASATKVYYG 119 QA P P++A +GSGPA+CVRSCDG+YFPLT RG AT AQ+CQAFCPAS T+VY+G Sbjct: 71 QAA-PPPRPMNA---SGSGPAFCVRSCDGRYFPLTTRGGATAAQMCQAFCPASPTRVYFG 126 Query: 120 SHIDSAASTAGERYADSENAFAYRKALRADCTCNGRDPAGLAPVDLALDASLRAGDVIAT 179 S+ID A ++ GERYADS+NAFAYRKAL+ADCTCNGRDPAGLAPVDL LD SLR+GDVIAT Sbjct: 127 SNIDGATASNGERYADSDNAFAYRKALKADCTCNGRDPAGLAPVDLTLDTSLRSGDVIAT 186 Query: 180 TDGLVAYTGIRVGNEQSFDFTPVASYPGLTSAVRARLGEMKVAPVSAEIAGD-APLPETG 238 T+GLVAY+G+RVG Q+ +FTPV SYPGLT+ VRARLGEMKVAPVSAE+ D APL ++G Sbjct: 187 TNGLVAYSGVRVGASQTAEFTPVNSYPGLTAEVRARLGEMKVAPVSAEMIVDPAPLADSG 246 >ref|YP_783722.1| hypothetical protein RPE_4823 [Rhodopseudomonas palustris BisA53] gb|ABJ08742.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 262 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 177/245 (72%), Gaps = 20/245 (8%) Query: 24 SAEGLFDFFFGGSQ-KQQSRQAPPQANFFADPFGLNQQAERQPSAPISAPRVAGSGPAYC 82 SAE LFD FGG Q KQ R A Q NFF DPFGLNQQ AP P G GPA+C Sbjct: 31 SAENLFDMLFGGLQPKQHQRGAASQPNFFTDPFGLNQQ-----PAPAPRPVSTGGGPAFC 85 Query: 83 VRSCDGKYFPLTMRGNATPAQLCQAFCPASATKVYYGSHIDSAASTAGERYADSENAFAY 142 VRSCDGKYFPLT RG AT AQ+CQAFCPAS T+VY+GSHID A ++ GERYADS NAFAY Sbjct: 86 VRSCDGKYFPLTTRGGATSAQMCQAFCPASPTRVYFGSHIDGATASNGERYADSVNAFAY 145 Query: 143 RKALRADCTCNGRDPAGLAPVDLALDASLRAGDVIATTDGLVAYTGIRVGNEQSFDFTPV 202 RKAL DCTCNGR P GLAPVDL LD SLR+GDV+AT DGLVAY+GIR+G Q+ +FTPV Sbjct: 146 RKALSPDCTCNGRTPMGLAPVDLTLDTSLRSGDVVATADGLVAYSGIRLGASQTAEFTPV 205 Query: 203 ASYPGLTSAVRARLGEMKVAPVSAEIAGDAPLPETGRDVAPSAPSSVAPKGNGAKPA--- 259 SYPGLT+ VRARLGEMKVAPV+AE+ APLP+ + V P AKPA Sbjct: 206 NSYPGLTAEVRARLGEMKVAPVNAEMLDPAPLPD----------AIVTPIIEMAKPASLR 255 Query: 260 -KRAE 263 KRAE Sbjct: 256 GKRAE 260 >ref|NP_950059.1| hypothetical protein RPA4725 [Rhodopseudomonas palustris CGA009] emb|CAE30165.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 267 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 155/256 (60%), Positives = 186/256 (72%), Gaps = 7/256 (2%) Query: 1 MRRRVMLAAAAFAGSILVVPAPVSAEGLFDFFFGGS--QKQQSRQAPPQANFFADPFGLN 58 +RR + A A ++ P SA+ L DF FGG+ Q+ Q R AP QANFFADPFGLN Sbjct: 10 LRRSALALGAVLAVPMIAAPEIASAQNLLDFLFGGAGPQRPQERGAPAQANFFADPFGLN 69 Query: 59 QQAERQPSAPISAPRVAGSGPAYCVRSCDGKYFPLTMRGNATPAQLCQAFCPASATKVYY 118 QQ ++ ++ G GPA+CVRSCDGKYFPL +R A+PAQ+CQAFCPA KVYY Sbjct: 70 QQNQQPQPQRQAS---VGGGPAFCVRSCDGKYFPLQIRAGASPAQMCQAFCPAGNAKVYY 126 Query: 119 GSHIDSAASTAGERYADSENAFAYRKALRADCTCNGRDPAGLAPVDLALDASLRAGDVIA 178 GS ID A + GERYADS NAFAYRK L+ DCTCNGRDPAGLA +DL+ D SLRAGD++A Sbjct: 127 GSQIDGARAANGERYADSPNAFAYRKVLKEDCTCNGRDPAGLAQIDLSQDNSLRAGDIVA 186 Query: 179 TTDGLVAYTGIRVGNEQSFDFTPVASYPGLTSAVRARLGEMKVAPVSAEIAGDAPLPETG 238 T +GLVAYTG+R+G EQ+ DFTPVA YPGLT+++RARLGEMKVAPV+ +IA AP P G Sbjct: 187 TANGLVAYTGVRLGVEQTPDFTPVADYPGLTASLRARLGEMKVAPVNEQIAEQAP-PALG 245 Query: 239 RDVA-PSAPSSVAPKG 253 RDV+ P P P G Sbjct: 246 RDVSLPVEPPKPIPHG 261