BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0040.p         (442 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002289223.1| gamma-aminobutyrate metabolism dehydratase/i...   833   0.0  
ref|ZP_07028542.1| Vinylacetyl-CoA Delta-isomerase [Afipia sp. 1...   815   0.0  
ref|ZP_01627762.1| 4-hydroxyphenylacetate 3-hydroxylase family p...   647   0.0  
ref|YP_004156018.1| vinylacetyL-CoA delta-isomerase [Variovorax ...   618   e-175
ref|YP_004618986.1| vinylacetyl-CoA delta-isomerase [Ramlibacter...   602   e-170

>ref|YP_002289223.1| gamma-aminobutyrate metabolism dehydratase/isomerase [Oligotropha
           carboxidovorans OM5]
 ref|YP_004632741.1| 4-hydroxyphenylacetate 3-hydroxylase HbaB [Oligotropha
           carboxidovorans OM5]
 gb|ACI93358.1| gamma-aminobutyrate metabolism dehydratase/isomerase [Oligotropha
           carboxidovorans OM5]
 gb|AEI02924.1| 4-hydroxyphenylacetate 3-hydroxylase HbaB [Oligotropha
           carboxidovorans OM4]
 gb|AEI06500.1| 4-hydroxyphenylacetate 3-hydroxylase HbaB [Oligotropha
           carboxidovorans OM5]
          Length = 516

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/441 (90%), Positives = 418/441 (94%)

Query: 1   MLMTAADYRESLRRYKPRVFVNGAAVASVADEPLLAPGVAGVGVTYDFALQPEHVPIMTA 60
           MLM+AADYRESLR YKP+VF+NG  V SVADEPLLAPG+AGVGVTYDFAL+ EH P+MTA
Sbjct: 1   MLMSAADYRESLRAYKPKVFINGNVVESVADEPLLAPGIAGVGVTYDFALREEHAPLMTA 60

Query: 61  RQGTSGKTVNRMLHINRSSQDLLDKLEAVRLVCRTSGCAQRYLSHDALNGLYQATRLTDD 120
           RQGTSGK VNRMLHIN +SQDLL KLEAVRLVC+TSGCAQRYL+HDALNGLYQ+TRLTD+
Sbjct: 61  RQGTSGKIVNRMLHINETSQDLLYKLEAVRLVCKTSGCAQRYLAHDALNGLYQSTRLTDE 120

Query: 121 RHGTDYSQRFLNYLHEVQDQDLTLGVAMTDAKGDRSKRPGLQANTDVYVHIRERRPDGIV 180
           RHGTDYSQRFL YLH VQD DLTLG+AMTDAKGDRSKRP  Q N DVYVHI ERR DGIV
Sbjct: 121 RHGTDYSQRFLAYLHHVQDNDLTLGIAMTDAKGDRSKRPSQQVNPDVYVHITERRKDGIV 180

Query: 181 IRGTKAIVTGAPYMHEFLVMPCRTHVPADKDFAVCCAVPVDAPGVTIVARPAGRPGDAAA 240
           IRGTKAIVTGAPYMHEFLVMPCRTH P DKD AVCCAVP DAPGVTI+ARPAGRPG+AAA
Sbjct: 181 IRGTKAIVTGAPYMHEFLVMPCRTHAPEDKDCAVCCAVPCDAPGVTIIARPAGRPGEAAA 240

Query: 241 KFSAKYGQSVGVVMFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL 300
           KFSAKYGQSVGVV+FDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL
Sbjct: 241 KFSAKYGQSVGVVIFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL 300

Query: 301 IGAGALMIEANGLDAEKHAHIREAMVELITITESFYACGVASSVYCTKDPAGSVMPDAVF 360
           IGAGALMIEANGLDAE+H+HIREAMVELITITESFYACGVASSVYCTKDPAGSVMPDAVF
Sbjct: 301 IGAGALMIEANGLDAERHSHIREAMVELITITESFYACGVASSVYCTKDPAGSVMPDAVF 360

Query: 361 SNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDIPAEQR 420
           SNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDIPA+QR
Sbjct: 361 SNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDIPADQR 420

Query: 421 AEVARLIEDLTVSHEAGWYSV 441
           AEVAR IEDLTVSHEAGWYSV
Sbjct: 421 AEVARFIEDLTVSHEAGWYSV 441


>ref|ZP_07028542.1| Vinylacetyl-CoA Delta-isomerase [Afipia sp. 1NLS2]
 gb|EFI49965.1| Vinylacetyl-CoA Delta-isomerase [Afipia sp. 1NLS2]
          Length = 516

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/441 (88%), Positives = 411/441 (93%)

Query: 1   MLMTAADYRESLRRYKPRVFVNGAAVASVADEPLLAPGVAGVGVTYDFALQPEHVPIMTA 60
           MLM+A  YRESLR YKPRVF+NG AV +VADEPLLAPG+AGVGVTYDFAL+ EH PIMTA
Sbjct: 1   MLMSADGYRESLRAYKPRVFINGQAVENVADEPLLAPGIAGVGVTYDFALREEHAPIMTA 60

Query: 61  RQGTSGKTVNRMLHINRSSQDLLDKLEAVRLVCRTSGCAQRYLSHDALNGLYQATRLTDD 120
           RQ TSGK VNRMLHI+ +SQDLL KLEAVRLVC+TSGCAQRYL+HDA NGLYQ+T LTD 
Sbjct: 61  RQATSGKIVNRMLHIDETSQDLLYKLEAVRLVCKTSGCAQRYLAHDAFNGLYQSTALTDA 120

Query: 121 RHGTDYSQRFLNYLHEVQDQDLTLGVAMTDAKGDRSKRPGLQANTDVYVHIRERRPDGIV 180
           RHGTDYSQR L YLHEVQ++DLTLG+AMTDAKGDRSKRPG Q N DVYVHI+ERR DGIV
Sbjct: 121 RHGTDYSQRLLAYLHEVQEKDLTLGIAMTDAKGDRSKRPGQQVNPDVYVHIKERRKDGIV 180

Query: 181 IRGTKAIVTGAPYMHEFLVMPCRTHVPADKDFAVCCAVPVDAPGVTIVARPAGRPGDAAA 240
           IRGTKAIVTGAPYMHEFLVMPCRTH P DKD AVCCAVP DAPGVTIVARPAGRPG+A+A
Sbjct: 181 IRGTKAIVTGAPYMHEFLVMPCRTHAPEDKDCAVCCAVPCDAPGVTIVARPAGRPGEASA 240

Query: 241 KFSAKYGQSVGVVMFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL 300
           KFSAKYGQSVGVV+FDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL
Sbjct: 241 KFSAKYGQSVGVVIFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL 300

Query: 301 IGAGALMIEANGLDAEKHAHIREAMVELITITESFYACGVASSVYCTKDPAGSVMPDAVF 360
           IG GALMIEANGLD E+HAHIREAMVELITITE FYACGVASSVYC KDPAGSVMPDAVF
Sbjct: 301 IGGGALMIEANGLDVERHAHIREAMVELITITEGFYACGVASSVYCKKDPAGSVMPDAVF 360

Query: 361 SNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDIPAEQR 420
           SNIGKLLLATKIYDMHR+AHYVSGGLIVALPGPDEDHNPET+ASLAAVMGGRPDIPAEQR
Sbjct: 361 SNIGKLLLATKIYDMHRIAHYVSGGLIVALPGPDEDHNPETKASLAAVMGGRPDIPAEQR 420

Query: 421 AEVARLIEDLTVSHEAGWYSV 441
            EVAR IEDLTVSHEAGWYSV
Sbjct: 421 GEVARFIEDLTVSHEAGWYSV 441


>ref|ZP_01627762.1| 4-hydroxyphenylacetate 3-hydroxylase family protein [marine gamma
           proteobacterium HTCC2080]
 gb|EAW39609.1| 4-hydroxyphenylacetate 3-hydroxylase family protein [marine gamma
           proteobacterium HTCC2080]
          Length = 524

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/441 (70%), Positives = 357/441 (80%), Gaps = 1/441 (0%)

Query: 2   LMTAADYRESLRRYKPRVFVNGAAVASVADEPLLAPGVAGVGVTYDFALQPEHVPIMTAR 61
           +M+A +YRESLR Y P V+V+G  + SVADEP LAPG+  VGVTYDFA +PE   +M A 
Sbjct: 9   IMSAEEYRESLRSYSPTVYVDGDLIESVADEPRLAPGIRAVGVTYDFAQKPEFGGVMLAD 68

Query: 62  QGTSGKTVNRMLHINRSSQDLLDKLEAVRLVCRTSGCAQRYLSHDALNGLYQAT-RLTDD 120
           Q +SGKTVNRMLHINR S+DLL KLEAVRL+CR SGCAQRYL+HDALN +YQ+T R+ D+
Sbjct: 69  QASSGKTVNRMLHINRHSEDLLSKLEAVRLLCRESGCAQRYLTHDALNAIYQSTWRMADE 128

Query: 121 RHGTDYSQRFLNYLHEVQDQDLTLGVAMTDAKGDRSKRPGLQANTDVYVHIRERRPDGIV 180
             G++Y  RFL+YLH++QD+DLTLGVAMTDAKG+R  RP  Q+N D YVHI ERR DGIV
Sbjct: 129 TSGSEYHSRFLDYLHDIQDRDLTLGVAMTDAKGERRLRPHAQSNPDAYVHISERRADGIV 188

Query: 181 IRGTKAIVTGAPYMHEFLVMPCRTHVPADKDFAVCCAVPVDAPGVTIVARPAGRPGDAAA 240
           + GTKAIVTG PYMHE LVMPCRT V  D DFAVCCAVP+DA G+T+VARPAGRPG AAA
Sbjct: 189 LSGTKAIVTGGPYMHELLVMPCRTMVAGDTDFAVCCAVPIDAKGLTVVARPAGRPGQAAA 248

Query: 241 KFSAKYGQSVGVVMFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGFGDLL 300
           KFSA+YGQS  V  F +VFVP DRVF+AGE ++   L TSYA HHRHSCIGARAGFGDLL
Sbjct: 249 KFSAQYGQSTAVCHFSEVFVPWDRVFMAGEWDQTEHLVTSYANHHRHSCIGARAGFGDLL 308

Query: 301 IGAGALMIEANGLDAEKHAHIREAMVELITITESFYACGVASSVYCTKDPAGSVMPDAVF 360
           IGAGALM +ANGLD +  +H+RE MVELI I E FYACGVA+SVY  +DP GS MP+ VF
Sbjct: 309 IGAGALMTDANGLDMDDVSHLRETMVELIKIVEGFYACGVAASVYGIQDPCGSWMPEPVF 368

Query: 361 SNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDIPAEQR 420
           SNIGKLLLAT+IYDMHR AH VSGGLIVALPGPDEDHNP T   LAAV+  RPD+P ++R
Sbjct: 369 SNIGKLLLATQIYDMHRTAHEVSGGLIVALPGPDEDHNPATAGDLAAVLSARPDVPYDKR 428

Query: 421 AEVARLIEDLTVSHEAGWYSV 441
            EV+R IEDLT S   GWYSV
Sbjct: 429 MEVSRFIEDLTASSTGGWYSV 449


>ref|YP_004156018.1| vinylacetyL-CoA delta-isomerase [Variovorax paradoxus EPS]
 gb|ADU37907.1| Vinylacetyl-CoA Delta-isomerase [Variovorax paradoxus EPS]
          Length = 539

 Score =  618 bits (1594), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 310/446 (69%), Positives = 348/446 (78%), Gaps = 6/446 (1%)

Query: 2   LMTAADYRESLRRYKPRVFVNGAAVASVADEPLLAPGVAGVGVTYDFALQPEHVPIMTAR 61
           LM+ ADYRESLRRY P VFV+G  V SVADE    PG+  + +TYD+AL+ ++ P+MTA 
Sbjct: 9   LMSGADYRESLRRYSPNVFVDGRRVDSVADEAAFQPGINAIALTYDYALKTQYEPLMTAV 68

Query: 62  QGTSGKTVNRMLHINRSSQDLLDKLEAVRLVCRTSGCAQRYLSHDALNGLYQAT-RLTDD 120
           Q TSGK VNR+ HIN SS DLL+KLEAVRLVC+ +GCAQRYL+HDALN + Q + R+ D 
Sbjct: 69  QHTSGKRVNRLSHINTSSGDLLNKLEAVRLVCQETGCAQRYLTHDALNAIAQVSARIDDA 128

Query: 121 RHGTDYSQRFLNYLHEVQDQDLTLGVAMTDAKGDRSKRPGLQANTDVYVHIRERRPDGIV 180
           R  T+++ RF  YLH VQDQDLTLGVAMTDAKGDRS+RP  QAN D Y+H+ ER   GIV
Sbjct: 129 RGSTEHTARFHEYLHRVQDQDLTLGVAMTDAKGDRSRRPHEQANIDSYLHVVERNARGIV 188

Query: 181 IRGTKAIVTGAPYMHEFLVMPCRTHVPADKDFAVCCAVPVDAPGVTIVARPAGRPGDAA- 239
           I GTKAIVTGAPY+HE LVMPCR     D DFAVCCAVP+DAPG+TIVARPAGRPG+   
Sbjct: 189 ISGTKAIVTGAPYVHELLVMPCRNMGREDADFAVCCAVPLDAPGLTIVARPAGRPGEKLE 248

Query: 240 ---AKFSAKYGQSVGVVMFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCIGARAGF 296
              A FS KYGQS GV MFD VFVP +RVF AGE E  G LT SYATHHRHSCIGARAGF
Sbjct: 249 HGDALFSRKYGQSTGVCMFDKVFVPWERVFYAGEWEHSGHLTYSYATHHRHSCIGARAGF 308

Query: 297 GDLLIGAGALMIEANGLDAEKHAHIREAMVELITITESFYACGVASSVYCTKDPAGSV-M 355
           GDLLIGAGALM EANG D  K +H+RE MVELITITESF+ACGVA+SVY   D    V M
Sbjct: 309 GDLLIGAGALMCEANGFDPGKESHLREQMVELITITESFFACGVAASVYGKADEHCEVFM 368

Query: 356 PDAVFSNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVMGGRPDI 415
           PD VFSNIGKLLLATKIYDMHR+AHYVSGGLIV LPGPDEDHNPET A L+ V+   P I
Sbjct: 369 PDPVFSNIGKLLLATKIYDMHRIAHYVSGGLIVTLPGPDEDHNPETAARLSDVLRANPAI 428

Query: 416 PAEQRAEVARLIEDLTVSHEAGWYSV 441
           P EQR E AR IEDLT  ++ GWYSV
Sbjct: 429 PYEQRIETARFIEDLTAGYQGGWYSV 454


>ref|YP_004618986.1| vinylacetyl-CoA delta-isomerase [Ramlibacter tataouinensis TTB310]
 gb|AEG92967.1| vinylacetyl-CoA delta-isomerase-like protein [Ramlibacter
           tataouinensis TTB310]
          Length = 550

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 302/452 (66%), Positives = 347/452 (76%), Gaps = 11/452 (2%)

Query: 1   MLMTAADYRESLRRYKPRVFVNGAAVASVADEPLLAPGVAGVGVTYDFALQPEHVPIMTA 60
           +LMT  DYRESLRRY+P VFV+G  V SVAD+P L PG+  + +TYD+A +PE+ P+MTA
Sbjct: 9   LLMTGDDYRESLRRYRPTVFVDGRRVDSVADDPALRPGINAIALTYDYAHKPEYAPLMTA 68

Query: 61  RQGTSGKTVNRMLHINRSSQDLLDKLEAVRLVCRTSGCAQRYLSHDALNGLYQ-ATRLTD 119
            Q TSG+ VNR+ HIN S+ DLL+KLEAVRLVC+ +GCAQRYL+HDALN + Q A R+ D
Sbjct: 69  VQHTSGRRVNRLAHINTSAGDLLNKLEAVRLVCQETGCAQRYLTHDALNAIGQVAARIDD 128

Query: 120 DRHGTDYSQRFLNYLHEVQDQDLTLGVAMTDAKGDRSKRPGLQANTDVYVHIRERRP--- 176
            R  T+++ RFLNYLH VQDQDLTLG+AMTDAKGDRS RP  QAN D YVH+ ER     
Sbjct: 129 ARGSTEHTARFLNYLHRVQDQDLTLGIAMTDAKGDRSLRPHQQANADSYVHVVERDAVRD 188

Query: 177 --DGIVIRGTKAIVTGAPYMHEFLVMPCRTHVPADKDFAVCCAVPVDAPGVTIVARPAGR 234
              GIVI GTKAIVTGAPYMHE LVMPCR     D DFAVCCAVP+DAPG+TIVARPAGR
Sbjct: 189 GVRGIVISGTKAIVTGAPYMHELLVMPCRNMGREDADFAVCCAVPIDAPGLTIVARPAGR 248

Query: 235 PGD----AAAKFSAKYGQSVGVVMFDDVFVPHDRVFLAGETEEGGFLTTSYATHHRHSCI 290
           PGD      A FS KYGQS GV +FD VFVP D VF AGE E  G LT SYATHHR +CI
Sbjct: 249 PGDKLEHGDALFSRKYGQSTGVCIFDRVFVPWDDVFYAGEWEHSGHLTYSYATHHRQTCI 308

Query: 291 GARAGFGDLLIGAGALMIEANGLDAEKHAHIREAMVELITITESFYACGVASSVYCTKDP 350
            ARAGFGDLLIGAGALM EANG D  +  H+RE MVELI ITE F+ACGVA+SVY   D 
Sbjct: 309 AARAGFGDLLIGAGALMCEANGFDPGRETHLREQMVELIKITEGFFACGVAASVYGKADE 368

Query: 351 -AGSVMPDAVFSNIGKLLLATKIYDMHRVAHYVSGGLIVALPGPDEDHNPETRASLAAVM 409
            + + MPD VF+NIGKLL+AT+IYDMHR+AHYVSGGLIV LPGPDEDHNPET A L+ V+
Sbjct: 369 HSRTFMPDPVFANIGKLLMATQIYDMHRIAHYVSGGLIVTLPGPDEDHNPETAARLSDVL 428

Query: 410 GGRPDIPAEQRAEVARLIEDLTVSHEAGWYSV 441
              P +P EQR + AR IEDLT  ++ GWYSV
Sbjct: 429 RANPHVPYEQRIQTARFIEDLTAGYQGGWYSV 460