BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0029.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240604.1| putative ABC transporter substrate-binding p... 741 0.0 ref|NP_773444.1| substrate-binding protein [Bradyrhizobium japon... 736 0.0 ref|NP_768902.1| branched chain amino acid transport system subs... 497 e-138 ref|NP_773288.1| ABC transporter substrate-binding protein [Brad... 447 e-123 ref|YP_002498639.1| ABC transporter substrate-binding protein [M... 439 e-121 >ref|YP_001240604.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36698.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 403 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/403 (86%), Positives = 374/403 (92%), Gaps = 3/403 (0%) Query: 1 VKRNFLALAILVAT---ASTASAQISNDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE 57 ++R LA A L T A+ ASAQ+S+DVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE Sbjct: 1 MRRQLLACAFLATTSFLATNASAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE 60 Query: 58 FGPTVLGKPIEIVSADHQMKTDVGLQIVRDWFDNGKVDAVADIPNSGIAIAVHNMVRERN 117 FGPTVLGKPIEI+SADHQMKTDVG IVRDWFDNGKVDAV DIPNSGIAIAVHNMVRERN Sbjct: 61 FGPTVLGKPIEIISADHQMKTDVGTTIVRDWFDNGKVDAVVDIPNSGIAIAVHNMVRERN 120 Query: 118 KIALLSGPGASSLTDELCSPNTVHFSYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQ 177 KIALLSGPGASSLTDELCSPNTVHF+YDTYALSKVT SAVI +GGKSW+F+TADYAFGQQ Sbjct: 121 KIALLSGPGASSLTDELCSPNTVHFTYDTYALSKVTTSAVISQGGKSWYFITADYAFGQQ 180 Query: 178 LEKDATRFIKELDGKVLGNVRHPTNTADFSSFVLQAQNSKADVVAFANAGQDTDNAIKQS 237 LEKDATRFIKEL G +LG V+HPTNTADFSSF LQAQ+SKADVVAFANAGQDTDNAIKQS Sbjct: 181 LEKDATRFIKELGGTILGGVKHPTNTADFSSFALQAQSSKADVVAFANAGQDTDNAIKQS 240 Query: 238 GEFGLVQAGQKLVGLLMFDTDVHAVGLQAAQGTYMTTASYWNMDDKTRAWSKRFFTRTNV 297 GEFGLV+ GQKLVGLLMFDTDVHA+GL+AAQGTYMTTASYWNMDD TRAWSKRFF RT V Sbjct: 241 GEFGLVKGGQKLVGLLMFDTDVHAIGLEAAQGTYMTTASYWNMDDNTRAWSKRFFVRTKV 300 Query: 298 MPTMIHTGVYGSVLHYLKAIKTAGTDDPAAVMAKMRELPVENTFVHGARLREDGRVIRDM 357 MPTMI TGVYGSVLHYLKAIK AGTDDP AVMAKMRELP+E+ FVHG +LREDGRV+RDM Sbjct: 301 MPTMIQTGVYGSVLHYLKAIKAAGTDDPKAVMAKMRELPIEDVFVHGGKLREDGRVVRDM 360 Query: 358 YLARVKKPSDSKEPWDYLEIVKTIRGEDAYRPVSESKCALLKK 400 YLARVKKPS+SKEPWDYLEIVKT++GEDA+RPVSESKC LLKK Sbjct: 361 YLARVKKPSESKEPWDYLEIVKTVKGEDAFRPVSESKCPLLKK 403 >ref|NP_773444.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52069.1| blr6804 [Bradyrhizobium japonicum USDA 110] Length = 404 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/403 (85%), Positives = 373/403 (92%), Gaps = 5/403 (1%) Query: 3 RNFLALAILVATAS-----TASAQISNDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE 57 R FLA A+L A S TA+AQ+S+D VRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE Sbjct: 2 RGFLACAMLAAMTSAAMTSTATAQVSDDAVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE 61 Query: 58 FGPTVLGKPIEIVSADHQMKTDVGLQIVRDWFDNGKVDAVADIPNSGIAIAVHNMVRERN 117 FGPTVLGKPIEI+SADHQMKTDVG+QIVR WFDNGKVDAV DIPNSGIAIAVHNMVRERN Sbjct: 62 FGPTVLGKPIEIISADHQMKTDVGVQIVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERN 121 Query: 118 KIALLSGPGASSLTDELCSPNTVHFSYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQ 177 KIALLSGPGASSLTDELCSPNTVHF+YDTYALSKVTASAVIKEGGKSW+F+TADYAFGQQ Sbjct: 122 KIALLSGPGASSLTDELCSPNTVHFTYDTYALSKVTASAVIKEGGKSWYFITADYAFGQQ 181 Query: 178 LEKDATRFIKELDGKVLGNVRHPTNTADFSSFVLQAQNSKADVVAFANAGQDTDNAIKQS 237 LEKDATRFI E+ GKVLG V+HPTNTADFSSF LQAQ+SK+DVVAFANAGQDTDNAIKQS Sbjct: 182 LEKDATRFINEMGGKVLGGVKHPTNTADFSSFALQAQSSKSDVVAFANAGQDTDNAIKQS 241 Query: 238 GEFGLVQAGQKLVGLLMFDTDVHAVGLQAAQGTYMTTASYWNMDDKTRAWSKRFFTRTNV 297 GEFGLVQ GQKLVGLLMFDTDVHA+GL+AAQGTYMTTA+YWNMD+ TRAWSK+F+ RT V Sbjct: 242 GEFGLVQGGQKLVGLLMFDTDVHAIGLKAAQGTYMTTAAYWNMDEATRAWSKKFYERTKV 301 Query: 298 MPTMIHTGVYGSVLHYLKAIKTAGTDDPAAVMAKMRELPVENTFVHGARLREDGRVIRDM 357 MPTMIHTGVYGSVLHYLK IK AGTDDPA VMAKMRELP+E+ FVHG +LREDGRVIRDM Sbjct: 302 MPTMIHTGVYGSVLHYLKGIKAAGTDDPAKVMAKMRELPIEDIFVHGGKLREDGRVIRDM 361 Query: 358 YLARVKKPSDSKEPWDYLEIVKTIRGEDAYRPVSESKCALLKK 400 YLA+VK P SKEPWDYLEI+KT++GEDA+RPVSESKC LLKK Sbjct: 362 YLAKVKSPEQSKEPWDYLEIIKTVKGEDAFRPVSESKCPLLKK 404 >ref|NP_768902.1| branched chain amino acid transport system substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47527.1| branched chain amino acid transport system substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 417 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 234/397 (58%), Positives = 295/397 (74%) Query: 3 RNFLALAILVATASTASAQISNDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTV 62 R + +L+A A AQ+S DVV+IGVLTD++ D +G GSV AA+MAV E G V Sbjct: 17 RRIACVLLLLAQPVAARAQVSGDVVKIGVLTDMAGVTADITGKGSVVAAEMAVTEIGGAV 76 Query: 63 LGKPIEIVSADHQMKTDVGLQIVRDWFDNGKVDAVADIPNSGIAIAVHNMVRERNKIALL 122 LGKPI+IVSADHQ K DVG I R WFD VDA+ D+PNSG+A+AV ++ RE+ +I L Sbjct: 77 LGKPIQIVSADHQHKADVGTAIARRWFDVEDVDAIVDVPNSGVALAVQSLAREKKRIVLY 136 Query: 123 SGPGASSLTDELCSPNTVHFSYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDA 182 SGPG ++LT+E CSP H++YDTYA+S TASAV+K GG +WF + +DYAFG QL++DA Sbjct: 137 SGPGTTALTNEQCSPYGFHWTYDTYAVSHGTASAVVKAGGGTWFILASDYAFGHQLQQDA 196 Query: 183 TRFIKELDGKVLGNVRHPTNTADFSSFVLQAQNSKADVVAFANAGQDTDNAIKQSGEFGL 242 T I L GKVLG+ RHP NT+DFSSF+L AQ+S A V+ ANAG DT NA++Q+GEFGL Sbjct: 197 TSVIAALGGKVLGSARHPLNTSDFSSFLLSAQSSGAKVIGLANAGNDTVNAMRQAGEFGL 256 Query: 243 VQAGQKLVGLLMFDTDVHAVGLQAAQGTYMTTASYWNMDDKTRAWSKRFFTRTNVMPTMI 302 VQ GQ L L++F DVHA+GL+ AQGTY+TTASYW+M++ TRAWSK FF +T +MP+M+ Sbjct: 257 VQGGQSLAALILFLQDVHALGLRDAQGTYLTTASYWDMNEATRAWSKAFFAKTGMMPSML 316 Query: 303 HTGVYGSVLHYLKAIKTAGTDDPAAVMAKMRELPVENTFVHGARLREDGRVIRDMYLARV 362 H GVYG+V HYLKA+ +AGTDD V MR +PVE+ F A +REDGRV R MYL RV Sbjct: 317 HAGVYGAVRHYLKAVASAGTDDAGRVATTMRTIPVEDVFSEDASIREDGRVTRTMYLVRV 376 Query: 363 KKPSDSKEPWDYLEIVKTIRGEDAYRPVSESKCALLK 399 KKPSDSK PWDY +IV+ I E P++ESKC L+K Sbjct: 377 KKPSDSKYPWDYFDIVRKIPPEKTVWPLAESKCPLVK 413 >ref|NP_773288.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51913.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/388 (53%), Positives = 281/388 (72%) Query: 11 LVATASTASAQISNDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTVLGKPIEIV 70 L AT TA AQIS+DVV+IGVLTD+SS D +G GS+ A +MAV ++G V GKP+++V Sbjct: 14 LAATCGTAQAQISDDVVKIGVLTDMSSLYADATGKGSLAAVEMAVADYGAKVAGKPVQVV 73 Query: 71 SADHQMKTDVGLQIVRDWFDNGKVDAVADIPNSGIAIAVHNMVRERNKIALLSGPGASSL 130 +ADHQ K DVG+ I R+W+DN KVDA+ D+P S +A+ + + RE+NKI + SG G+S + Sbjct: 74 AADHQNKPDVGVNIARNWYDNDKVDAIFDVPTSSVALPISALTREKNKININSGGGSSDI 133 Query: 131 TDELCSPNTVHFSYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDATRFIKELD 190 T CSPNTVH++YDTYALS V A++K G +W+FVTADYAFG L++DA +KE Sbjct: 134 TGVACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWYFVTADYAFGMALQRDAANVVKESG 193 Query: 191 GKVLGNVRHPTNTADFSSFVLQAQNSKADVVAFANAGQDTDNAIKQSGEFGLVQAGQKLV 250 GKVLG VRHP N++DFSSF+LQAQ SKA VVA ANAG DT NA+KQ+ EFGL Q GQK++ Sbjct: 194 GKVLGEVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQAAEFGLTQGGQKMI 253 Query: 251 GLLMFDTDVHAVGLQAAQGTYMTTASYWNMDDKTRAWSKRFFTRTNVMPTMIHTGVYGSV 310 LL TD H++G++A QG +T A YW+M+++TRA+SKRF + MPTMI G+Y + Sbjct: 254 ALLQEITDTHSLGIKATQGLIVTDAFYWDMNEETRAFSKRFNEKVGHMPTMIQAGLYSAT 313 Query: 311 LHYLKAIKTAGTDDPAAVMAKMRELPVENTFVHGARLREDGRVIRDMYLARVKKPSDSKE 370 +HYLKAI+ TD+ VM +MR PV + F ++R DGR++ DMYL VKKP +SK Sbjct: 314 MHYLKAIEAIKTDEAPKVMEQMRSTPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKG 373 Query: 371 PWDYLEIVKTIRGEDAYRPVSESKCALL 398 WD +++ T+ G++A+RP+ + C L+ Sbjct: 374 EWDLYKLIATVPGDEAFRPLDKGGCPLV 401 >ref|YP_002498639.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL58336.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] Length = 406 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/399 (52%), Positives = 283/399 (70%) Query: 2 KRNFLALAILVATASTASAQISNDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPT 61 + F AL L+ +S AQIS++VV+IGVL+D+S+ D++GPGSV AA+MAVE+FG Sbjct: 4 RSRFCALMALMLGSSAVQAQISDNVVKIGVLSDMSAGQSDSTGPGSVVAARMAVEDFGGK 63 Query: 62 VLGKPIEIVSADHQMKTDVGLQIVRDWFDNGKVDAVADIPNSGIAIAVHNMVRERNKIAL 121 VL +PIE+VSADHQ K DVG IVR W + +VD VAD+P S +A+AV + RER++I L Sbjct: 64 VLDQPIEVVSADHQNKPDVGSNIVRQWLERQQVDVVADVPTSSVALAVQTLTRERDRIFL 123 Query: 122 LSGPGASSLTDELCSPNTVHFSYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKD 181 S G+S L+ CSP +H++YDTY+L+ TA ++ +G +W+F+TADYAFG LE+D Sbjct: 124 NSSAGSSDLSGPACSPTAIHWTYDTYSLANGTAGPLVSQGADTWYFITADYAFGHALERD 183 Query: 182 ATRFIKELDGKVLGNVRHPTNTADFSSFVLQAQNSKADVVAFANAGQDTDNAIKQSGEFG 241 ++ + GKV G VRHP ADFSS +LQAQ S+A V+A A+ DT A KQ+GEFG Sbjct: 184 TSQAVTRNGGKVSGTVRHPMGMADFSSPLLQAQASQAKVIALADPVGDTATAAKQAGEFG 243 Query: 242 LVQAGQKLVGLLMFDTDVHAVGLQAAQGTYMTTASYWNMDDKTRAWSKRFFTRTNVMPTM 301 + GQKLVGLL+ D+ A+GL AQG +TT+ YW+ DD+TRA++KRFF R MPT Sbjct: 244 IQVQGQKLVGLLIDVVDLRAIGLPIAQGMLLTTSFYWDRDDETRAFAKRFFDRHKRMPTQ 303 Query: 302 IHTGVYGSVLHYLKAIKTAGTDDPAAVMAKMRELPVENTFVHGARLREDGRVIRDMYLAR 361 GVY S++HYLKA++ AGTD+ AV+AKMRE+PV + F RLREDGR++ DMYL + Sbjct: 304 FQAGVYSSIMHYLKAVQAAGTDEAKAVVAKMREMPVNDFFARNGRLREDGRMVHDMYLMQ 363 Query: 362 VKKPSDSKEPWDYLEIVKTIRGEDAYRPVSESKCALLKK 400 VK P++SK WD L++V+TI GE A+RP+ C L+ K Sbjct: 364 VKSPAESKGEWDLLKLVQTIPGERAFRPLDAGGCPLVAK 402