BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0016.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizob... 352 5e-95 ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopse... 348 5e-94 ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit ... 295 6e-78 ref|YP_001525397.1| exonuclease [Azorhizobium caulinodans ORS 57... 294 8e-78 ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [A... 291 1e-76 >ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 170/283 (60%), Positives = 209/283 (73%), Gaps = 3/283 (1%) Query: 2 LEQSPDYRVLRRLVPRAEFT-PHEQPEKIAILLDVETTGLDTAMDEIIELGMVKFSYLAD 60 L +S DYRVLRRLVPR + P Q + ILLD ETTGLD DEIIELGMVKF Y D Sbjct: 15 LSRSSDYRVLRRLVPRIPLSRPAGQETRTGILLDTETTGLDHRKDEIIELGMVKFDYTPD 74 Query: 61 GRIGRVIDTFSSFNQPSIAIPAEITALTGITDEMVAGHSLDEDRINAFASEAVVVIAHNA 120 GRI V DTF++F++PS IP EITA+TGITDEMVAG +D+ ++AF +AV+ IAHN+ Sbjct: 75 GRIVGVRDTFAAFDEPSAPIPPEITAITGITDEMVAGQRIDDAAVSAFVDDAVITIAHNS 134 Query: 121 GFDRRFMERYAYLFVHKAWACSVSEIEWRSHGFEGSRLSYLLMKAGLFHEAHRAVDDCQA 180 GFDR+F ERY +F HKAW CS +EI+WR HGF G++L YLL G FH+AHRAVDDC A Sbjct: 135 GFDRKFAERYWPVFEHKAWGCSATEIDWREHGFAGAQLGYLLNGTGFFHQAHRAVDDCHA 194 Query: 181 LLEILAMALPELNRTVLSVLLERARR--IRIWAEQSPFELKDELKRRGYRWSDGADGRPR 238 LLE+L LP L++LLE ARR +R+WAEQ+ FELKD LKRRGYRW+DG+DGRP+ Sbjct: 195 LLEVLDFVLPTTGAPALALLLETARRPTLRVWAEQTAFELKDSLKRRGYRWNDGSDGRPK 254 Query: 239 SWYIDVDDGNQAAEIEYLQETVYQRDVEIRIQTLTAFDRFSTR 281 SW+IDV++ EI +L+ +Y R+VE +Q LTAF RFS R Sbjct: 255 SWFIDVNESGLDDEIAFLRAEIYMREVEPSVQRLTAFTRFSCR 297 >ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris TIE-1] gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 348 bits (893), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 167/276 (60%), Positives = 208/276 (75%), Gaps = 3/276 (1%) Query: 10 VLRRLVPRAEFTPHEQPE-KIAILLDVETTGLDTAMDEIIELGMVKFSYLADGRIGRVID 68 +LRRLV R +TP PE + I+LD+ETTGLD + DEIIELGMVKF Y A+GRI V Sbjct: 1 MLRRLVARPPYTPAGGPEVRTGIMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRG 60 Query: 69 TFSSFNQPSIAIPAEITALTGITDEMVAGHSLDEDRINAFASEAVVVIAHNAGFDRRFME 128 TFS+FN+PS+ IP EITA+TGITD MVAGH D + AF +AV+VIAHN+GFDR+F E Sbjct: 61 TFSAFNEPSVPIPREITAITGITDGMVAGHGFDVHAVAAFVDDAVIVIAHNSGFDRKFAE 120 Query: 129 RYAYLFVHKAWACSVSEIEWRSHGFEGSRLSYLLMKAGLFHEAHRAVDDCQALLEILAMA 188 RY +F H+AWACSV+E++W +HGF ++L YLL AG FH+AHRAVDDC ALLEIL Sbjct: 121 RYWPVFEHRAWACSVTEVDWGAHGFADAQLGYLLNGAGFFHQAHRAVDDCHALLEILDFT 180 Query: 189 LPELNRTVLSVLLERARR--IRIWAEQSPFELKDELKRRGYRWSDGADGRPRSWYIDVDD 246 LP L++LL+ AR+ +R+WAEQSPFELKD LK+RGYRW+DG+DGRP SW+IDVD+ Sbjct: 181 LPTTGAPALALLLDNARKPTMRVWAEQSPFELKDSLKKRGYRWNDGSDGRPNSWFIDVDE 240 Query: 247 GNQAAEIEYLQETVYQRDVEIRIQTLTAFDRFSTRV 282 EI +L+ +Y DVE +Q LTAF RFS+RV Sbjct: 241 AALDGEIAFLRTEIYMSDVEPSVQRLTAFTRFSSRV 276 >ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 302 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 148/283 (52%), Positives = 197/283 (69%), Gaps = 3/283 (1%) Query: 2 LEQSPDYRVLRRLVPRAEFTPHE-QPEKIAILLDVETTGLDTAMDEIIELGMVKFSYLAD 60 LE S +RV RR+ R + + +KI ++DVETTGLD DEIIELGMV F + +D Sbjct: 13 LEASGRFRVQRRIERREQVHADDGTAKKIGAVVDVETTGLDLVKDEIIELGMVLFEFSSD 72 Query: 61 GRIGRVIDTFSSFNQPSIAIPAEITALTGITDEMVAGHSLDEDRINAFASEAVVVIAHNA 120 GRI R++D +F +P+I I EIT LTGIT EMVAGHS+D I + +VIAHNA Sbjct: 73 GRIYRILDVVEAFQEPTIPILPEITQLTGITAEMVAGHSIDVAEIERLIAPVALVIAHNA 132 Query: 121 GFDRRFMERYAYLFVHKAWACSVSEIEWRSHGFEGSRLSYLLMKAGLFHEAHRAVDDCQA 180 GFDRRF+ER A F KAWACS++EI+W + G G++L YLL + GLFH+ HRA DC A Sbjct: 133 GFDRRFLERLAPGFAKKAWACSINEIDWAAEGIGGTKLFYLLAQYGLFHDGHRAGADCLA 192 Query: 181 LLEILAMALPELNRTVLSVLLERAR--RIRIWAEQSPFELKDELKRRGYRWSDGADGRPR 238 LLEILA LP + L LL AR +RIWAE +PF+ KD+LKRRGY+W+DG+DG P+ Sbjct: 193 LLEILAKPLPVSGKLGLEQLLVNARCPTVRIWAEYAPFDYKDDLKRRGYKWNDGSDGTPK 252 Query: 239 SWYIDVDDGNQAAEIEYLQETVYQRDVEIRIQTLTAFDRFSTR 281 +W+IDV + A E+ YL++ +Y+RD+ + +Q +TAF+R+S R Sbjct: 253 AWWIDVREDALATELTYLRDEIYRRDISLPMQRMTAFERYSAR 295 >ref|YP_001525397.1| exonuclease [Azorhizobium caulinodans ORS 571] dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571] Length = 334 Score = 294 bits (753), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 151/282 (53%), Positives = 188/282 (66%), Gaps = 5/282 (1%) Query: 2 LEQSPDYRVLRRLVPRAEFTPH--EQPEKIAILLDVETTGLDTAMDEIIELGMVKFSYLA 59 LE++ +RVLRRL PR P E EK+A+++D ETTGLD DE+IELGMV F+Y Sbjct: 53 LEETGRFRVLRRLEPR-RVVPRALELGEKLAVIVDTETTGLDHTRDEVIELGMVAFTYRE 111 Query: 60 DGRIGRVIDTFSSFNQPSIAIPAEITALTGITDEMVAGHSLDEDRINAFASEAVVVIAHN 119 G IG V+DTFS+ +P++ I IT LTGIT EMVAG S+D + F A +VIAHN Sbjct: 112 GGAIGDVVDTFSALREPTVPISPVITKLTGITPEMVAGQSIDLEAAARFIQPASIVIAHN 171 Query: 120 AGFDRRFMERYAYLFVHKAWACSVSEIEWRSHGFEGSRLSYLLMKAGLFHEAHRAVDDCQ 179 A FDR F E F K WACSV E+ W GFEG++L YL+ + G+FH HRAVDDC Sbjct: 172 ARFDRPFCEHLVEGFDVKPWACSVVEVPWADFGFEGTKLGYLIGQCGMFHNGHRAVDDCH 231 Query: 180 ALLEILAMALPELNRTVLSVLLERAR--RIRIWAEQSPFELKDELKRRGYRWSDGADGRP 237 ALLE+LA L E T LLE AR R R+WAE SPF++KD LK RGYRW+DG+DGRP Sbjct: 232 ALLEVLAAPLKEATGTAFGRLLETARRPRFRVWAENSPFDMKDALKARGYRWNDGSDGRP 291 Query: 238 RSWYIDVDDGNQAAEIEYLQETVYQRDVEIRIQTLTAFDRFS 279 +SWY +V+D EI +L+E VY R VE +Q LTA +R+ Sbjct: 292 KSWYREVEDEALGEEIAFLREEVYLRAVEPYVQKLTAMNRYK 333 >ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] Length = 297 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 140/257 (54%), Positives = 178/257 (69%), Gaps = 2/257 (0%) Query: 28 KIAILLDVETTGLDTAMDEIIELGMVKFSYLADGRIGRVIDTFSSFNQPSIAIPAEITAL 87 + +++DVETTGLD DEIIEL MV F Y DG + V++ F +PS I +EIT L Sbjct: 41 RTGLMVDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEITVL 100 Query: 88 TGITDEMVAGHSLDEDRINAFASEAVVVIAHNAGFDRRFMERYAYLFVHKAWACSVSEIE 147 TGITD MVAG S+D + FA+ A VVIAHNA FDRRF+ER++ +F K WACS+SEI+ Sbjct: 101 TGITDAMVAGKSIDPSEVTMFAAPAAVVIAHNAAFDRRFLERFSPVFSTKPWACSMSEID 160 Query: 148 WRSHGFEGSRLSYLLMKAGLFHEAHRAVDDCQALLEILAMALPELNRTVLSVLLERAR-- 205 W + GFEG++LSYL M G F++ HRA +DC A +E+LA LP L+ LLERAR Sbjct: 161 WAAEGFEGAKLSYLAMALGFFYDRHRAANDCLAAIELLARELPRARAPALAKLLERARLP 220 Query: 206 RIRIWAEQSPFELKDELKRRGYRWSDGADGRPRSWYIDVDDGNQAAEIEYLQETVYQRDV 265 RIWAE SPFE KD LK RGYRW+ +G+PRSWY+DV D + AEI YL +YQ +V Sbjct: 221 TWRIWAENSPFEFKDLLKARGYRWNGEENGKPRSWYVDVSDAEKEAEISYLAREIYQYEV 280 Query: 266 EIRIQTLTAFDRFSTRV 282 ++R +TA+DRFS RV Sbjct: 281 DVRTVRVTAYDRFSNRV 297