BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0131.0012.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_487481.1| urea/short-chain binding protein of ABC transpo... 469 e-130 ref|YP_568611.1| putative urea/short-chain binding protein of AB... 462 e-128 ref|YP_001242173.1| putative branched-chain amino acid ABC trans... 461 e-128 ref|YP_001207722.1| putative branched-chain amino acid ABC trans... 460 e-128 ref|NP_768944.1| ABC transporter substrate-binding protein [Brad... 454 e-126 >ref|YP_487481.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] gb|ABD08570.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] Length = 406 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/241 (91%), Positives = 233/241 (96%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 +IVGDHQLKPDIGA +ARRWYDV+QVDLIVDVPVSAVGLAVQNIA EKK++FITHSTGA Sbjct: 76 IIVGDHQLKPDIGAALARRWYDVEQVDLIVDVPVSAVGLAVQNIAGEKKRMFITHSTGAA 135 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 DFHGKFCSPYA+QWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFG SLE+DA+A+VTK Sbjct: 136 DFHGKFCSPYAMQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGQSLERDAAAVVTK 195 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 +GGKVLGAVRPPFATPDLSSF+LQAQASKAKIIGIAGGPPNN NEIKT AEFGVF GGQQ Sbjct: 196 SGGKVLGAVRPPFATPDLSSFVLQAQASKAKIIGIAGGPPNNINEIKTGAEFGVFKGGQQ 255 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 MAALLALITDIHS+GL AAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS Sbjct: 256 MAALLALITDIHSLGLPAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 315 Query: 241 S 241 S Sbjct: 316 S 316 >ref|YP_568611.1| putative urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris BisB5] gb|ABE38710.1| putative urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris BisB5] Length = 406 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/243 (89%), Positives = 232/243 (95%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 VIVGDHQLKPDIG +ARRWYDV+QVDLIVDVPVSAVGLAVQNIANEKK++FIT STGA Sbjct: 72 VIVGDHQLKPDIGGALARRWYDVEQVDLIVDVPVSAVGLAVQNIANEKKRMFITQSTGAA 131 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 DFHGKFCSPY +QWVFDTRALAVGTAQEVVKRGGD+WFFITDDYAFG SLE+DA+A+VTK Sbjct: 132 DFHGKFCSPYTMQWVFDTRALAVGTAQEVVKRGGDTWFFITDDYAFGLSLERDAAAVVTK 191 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 GGKV+G+VRPPFATPDLSSF+LQAQASKAKIIGIAGGPPNN NEIKT AEFGVF GGQQ Sbjct: 192 AGGKVIGSVRPPFATPDLSSFVLQAQASKAKIIGIAGGPPNNINEIKTGAEFGVFKGGQQ 251 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 MAALLALITDIHS+GL AAQGLLLTTSFYWDMDD+TREWSKRYFAKMNRMPTMWQAGVYS Sbjct: 252 MAALLALITDIHSLGLPAAQGLLLTTSFYWDMDDRTREWSKRYFAKMNRMPTMWQAGVYS 311 Query: 241 SVT 243 +VT Sbjct: 312 AVT 314 >ref|YP_001242173.1| putative branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38267.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 403 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/243 (89%), Positives = 229/243 (94%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 VIVGDHQLKPDIGA IARRWYD +QVDLIVDVPVSAVGLAVQ IA EKK+LFIT STGA Sbjct: 73 VIVGDHQLKPDIGAAIARRWYDTEQVDLIVDVPVSAVGLAVQTIATEKKRLFITQSTGAA 132 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 DFHGKFCSPYA+QWVFDTRALA GTA+EVVKRGGDSWFFITDDYAFGHSLE+DA+ +VT Sbjct: 133 DFHGKFCSPYAMQWVFDTRALATGTAKEVVKRGGDSWFFITDDYAFGHSLERDAAGVVTA 192 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NGGKV+GAVRPPFATPDLSSFILQAQASKAKIIGIA GPPNN NEIKTAAEFG+ GGQQ Sbjct: 193 NGGKVVGAVRPPFATPDLSSFILQAQASKAKIIGIAAGPPNNMNEIKTAAEFGLLKGGQQ 252 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 MAALLALITDIHS+GL AAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS Sbjct: 253 MAALLALITDIHSLGLPAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 312 Query: 241 SVT 243 +VT Sbjct: 313 AVT 315 >ref|YP_001207722.1| putative branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79505.1| putative branched-chain amino acid ABC transporter, substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 415 Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/243 (89%), Positives = 229/243 (94%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 VIVGDHQLKPDIGA IARRWYD +QVDLIVDVPVSAVGLAVQ IA EKKKLFIT STGA Sbjct: 85 VIVGDHQLKPDIGAAIARRWYDTEQVDLIVDVPVSAVGLAVQTIATEKKKLFITQSTGAA 144 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 DFHGKFCSPYA+QWVFDT+ALA GTA+EVVKRGGDSWFFITDDYAFGHSLE+DAS++VT Sbjct: 145 DFHGKFCSPYAMQWVFDTKALATGTAKEVVKRGGDSWFFITDDYAFGHSLERDASSVVTA 204 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NG KV+GAVRPPFATPDLSSFILQAQASKAKIIGIA GPPNN NEIKTAAEFG+ GGQQ Sbjct: 205 NGAKVVGAVRPPFATPDLSSFILQAQASKAKIIGIAAGPPNNMNEIKTAAEFGLLKGGQQ 264 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 MAALLALITDIHS+GL AAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS Sbjct: 265 MAALLALITDIHSLGLPAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 324 Query: 241 SVT 243 +VT Sbjct: 325 AVT 327 >ref|NP_768944.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47569.1| bll2304 [Bradyrhizobium japonicum USDA 110] Length = 409 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/242 (88%), Positives = 227/242 (93%) Query: 1 VIVGDHQLKPDIGATIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKKLFITHSTGAT 60 +++GDHQLK DIG IARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKK+LFITHSTG Sbjct: 79 IVIGDHQLKADIGGAIARRWYDVDQVDLIVDVPVSAVGLAVQNIANEKKRLFITHSTGTA 138 Query: 61 DFHGKFCSPYAIQWVFDTRALAVGTAQEVVKRGGDSWFFITDDYAFGHSLEKDASAIVTK 120 DFHGKFCSPYAIQWVFDTRALAVGTA VVKRGGDSWFFITDDYAFGHSLE+DAS++VT Sbjct: 139 DFHGKFCSPYAIQWVFDTRALAVGTADAVVKRGGDSWFFITDDYAFGHSLERDASSVVTA 198 Query: 121 NGGKVLGAVRPPFATPDLSSFILQAQASKAKIIGIAGGPPNNTNEIKTAAEFGVFAGGQQ 180 NGGKVLG+V+PP ATPDLSSF+LQAQASKAKIIGIA GPPNN NEIKT +EFGVF GGQQ Sbjct: 199 NGGKVLGSVKPPLATPDLSSFVLQAQASKAKIIGIAAGPPNNMNEIKTGSEFGVFKGGQQ 258 Query: 181 MAALLALITDIHSIGLSAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNRMPTMWQAGVYS 240 MAALLALITDIH +GL AAQGLLLTTSFYWDMDDKTREWSKRYFAKMN+MP+MWQAGVYS Sbjct: 259 MAALLALITDIHGLGLQAAQGLLLTTSFYWDMDDKTREWSKRYFAKMNKMPSMWQAGVYS 318 Query: 241 SV 242 SV Sbjct: 319 SV 320