BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0131.0001.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768953.1| hypothetical protein bsr2313 [Bradyrhizobium ja...   134   4e-30
ref|YP_578325.1| SirA-like [Nitrobacter hamburgensis X14] >gi|91...   133   1e-29
ref|ZP_08628856.1| SirA-like protein [Bradyrhizobiaceae bacteriu...   123   8e-27
ref|ZP_01047046.1| SirA-like protein [Nitrobacter sp. Nb-311A] >...   118   2e-25
ref|YP_317589.1| SirA-like protein [Nitrobacter winogradskyi Nb-...   118   4e-25

>ref|NP_768953.1| hypothetical protein bsr2313 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47578.1| bsr2313 [Bradyrhizobium japonicum USDA 110]
          Length = 91

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 73/85 (85%)

Query: 1  MTTTKLDLTGLKCPLPALKTRKALRSVTAGDFLEVHCTDPLSVIDIPALIQETGDKVEIT 60
          MT T LDLTGLKCPLPALKTRKAL+ +  GD LEV+CTDPLSVIDIP LI+ETGD VEIT
Sbjct: 5  MTRTTLDLTGLKCPLPALKTRKALKPLQPGDQLEVYCTDPLSVIDIPNLIRETGDTVEIT 64

Query: 61 ERSDARIVFLIEKINGAIDNSNAAL 85
          ER+DARIVFLIEK NG I N+N AL
Sbjct: 65 ERNDARIVFLIEKANGPIGNTNGAL 89


>ref|YP_578325.1| SirA-like [Nitrobacter hamburgensis X14]
 gb|ABE63865.1| SirA-like protein [Nitrobacter hamburgensis X14]
          Length = 80

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 71/79 (89%)

Query: 1  MTTTKLDLTGLKCPLPALKTRKALRSVTAGDFLEVHCTDPLSVIDIPALIQETGDKVEIT 60
          M  TKLDLTGLKCPLPALKTRKAL+ + AGD LEVHCTDPLSVIDIP LI+ETGDKVEIT
Sbjct: 1  MNRTKLDLTGLKCPLPALKTRKALKPLRAGDLLEVHCTDPLSVIDIPNLIRETGDKVEIT 60

Query: 61 ERSDARIVFLIEKINGAID 79
          ER++ RIVFLIEK NGAI+
Sbjct: 61 ERNEQRIVFLIEKTNGAIE 79


>ref|ZP_08628856.1| SirA-like protein [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08215.1| SirA-like protein [Bradyrhizobiaceae bacterium SG-6C]
          Length = 82

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 67/76 (88%)

Query: 1  MTTTKLDLTGLKCPLPALKTRKALRSVTAGDFLEVHCTDPLSVIDIPALIQETGDKVEIT 60
          M  TKLDLTGLKCPLP LKTRKAL+++ AGD LEVHCTDPLSVIDIP LI+ETGD++EI 
Sbjct: 4  MAMTKLDLTGLKCPLPVLKTRKALKALMAGDRLEVHCTDPLSVIDIPNLIRETGDRLEIV 63

Query: 61 ERSDARIVFLIEKING 76
          ER++ RIVF+IEK NG
Sbjct: 64 ERAEKRIVFMIEKTNG 79


>ref|ZP_01047046.1| SirA-like protein [Nitrobacter sp. Nb-311A]
 gb|EAQ34951.1| SirA-like protein [Nitrobacter sp. Nb-311A]
          Length = 97

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 67/77 (87%)

Query: 1  MTTTKLDLTGLKCPLPALKTRKALRSVTAGDFLEVHCTDPLSVIDIPALIQETGDKVEIT 60
          M  +KLDLTGLKCP+PALKTRKAL+S+T G+ LEVHCTDPLSVIDIP LI+ETGD VEIT
Sbjct: 1  MLISKLDLTGLKCPMPALKTRKALKSLTPGERLEVHCTDPLSVIDIPNLIRETGDSVEIT 60

Query: 61 ERSDARIVFLIEKINGA 77
          ER++ RIVFLI+K   +
Sbjct: 61 ERAERRIVFLIKKAGAS 77


>ref|YP_317589.1| SirA-like protein [Nitrobacter winogradskyi Nb-255]
 gb|ABA04237.1| SirA-like protein [Nitrobacter winogradskyi Nb-255]
          Length = 101

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 66/73 (90%)

Query: 1  MTTTKLDLTGLKCPLPALKTRKALRSVTAGDFLEVHCTDPLSVIDIPALIQETGDKVEIT 60
          M  +KLDLTGLKCP+PALKTRKAL+S+T G+ LEVHCTDPLSVIDIP LI+ETGD VEIT
Sbjct: 5  MLISKLDLTGLKCPMPALKTRKALKSLTPGERLEVHCTDPLSVIDIPNLIRETGDSVEIT 64

Query: 61 ERSDARIVFLIEK 73
          ER++ RIVFLI+K
Sbjct: 65 ERAERRIVFLIKK 77