BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0010.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769301.1| hypothetical protein bll2661 [Bradyrhizobium ja...   154   3e-36
ref|YP_002279067.1| hypothetical protein Rleg2_5116 [Rhizobium l...   130   7e-29
ref|ZP_08071666.1| hypothetical protein Met49242DRAFT_1053 [Meth...   107   6e-22
ref|NP_951311.1| hypothetical protein GSU0250 [Geobacter sulfurr...    82   2e-14
ref|YP_001952189.1| hypothetical protein Glov_1953 [Geobacter lo...    82   2e-14

>ref|NP_769301.1| hypothetical protein bll2661 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47926.1| bll2661 [Bradyrhizobium japonicum USDA 110]
          Length = 199

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 111/141 (78%)

Query: 1   MLPDTPSVSQLSQVISQAAAPAFLLGALAAFIAVLISRLNRIIDRSIYLNQISDQDQARC 60
           ++P TPS+ QL+++I   AAPAFLLGA+A+FI+VL+SR+NR++DR+ +L+ I+D D ++ 
Sbjct: 56  LIPVTPSIDQLARIIGNVAAPAFLLGAVASFISVLVSRINRVVDRAQFLHGITDGDASKA 115

Query: 61  RLKADLPRLARRATMINRAIFWSIIGSISISIVIVVGFVSAFFHIQHERGVAILFIVSVV 120
            LK D+PRL  RA+++NR++F SI+ +I  +++I+V F+SA F++ HE GVA+LF+ +++
Sbjct: 116 YLKTDIPRLRHRASLLNRSLFCSILSAILTALIIIVAFISALFNVAHEYGVAMLFMAALL 175

Query: 121 AFIVSLVDFAREVRIALSELD 141
            F  SL+D ARE RIAL + D
Sbjct: 176 MFCASLIDLARETRIALHDND 196


>ref|YP_002279067.1| hypothetical protein Rleg2_5116 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gb|ACI58327.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 144

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 99/143 (69%)

Query: 1   MLPDTPSVSQLSQVISQAAAPAFLLGALAAFIAVLISRLNRIIDRSIYLNQISDQDQARC 60
           ML +  +  Q+S+VISQA APAFLLGA+AAFI+VLI+R+NRI DRS  L+   + D  R 
Sbjct: 1   MLNEVTTAEQISRVISQATAPAFLLGAVAAFISVLITRMNRIADRSNVLSASPEGDNHRN 60

Query: 61  RLKADLPRLARRATMINRAIFWSIIGSISISIVIVVGFVSAFFHIQHERGVAILFIVSVV 120
            L+  LPRL RRA ++N+AI +++I  I  + ++++ F S+  +++HE G A++F ++++
Sbjct: 61  DLQVVLPRLKRRARLLNKAIEFAVISGICTTALVILAFASSLLNLKHEYGAAVMFSIALL 120

Query: 121 AFIVSLVDFAREVRIALSELDHY 143
            F  SLV    EVR AL +LD Y
Sbjct: 121 FFAASLVTLLLEVRAALHDLDFY 143


>ref|ZP_08071666.1| hypothetical protein Met49242DRAFT_1053 [Methylocystis sp. ATCC
           49242]
 gb|EFY00423.1| hypothetical protein Met49242DRAFT_1053 [Methylocystis sp. ATCC
           49242]
          Length = 153

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 5/141 (3%)

Query: 1   MLPDTPSVSQLSQVISQAAAPAFLLGALAAFIAVLISRLNRIIDRSIYLNQISDQDQARC 60
           ML +TPS+ QLS VIS+   PAFLL A A  +A L+SRL+RIIDRS  +      DQ   
Sbjct: 1   MLINTPSIEQLSNVISEVTGPAFLLAAEAQLLAALVSRLDRIIDRSRSMG-----DQEAG 55

Query: 61  RLKADLPRLARRATMINRAIFWSIIGSISISIVIVVGFVSAFFHIQHERGVAILFIVSVV 120
             +++L  L RRA +++RAI+W +   I  S++++V F +AFFHI HE G  +LF +++ 
Sbjct: 56  DRESELRVLRRRADLMHRAIYWGVASCIVTSLLVIVSFAAAFFHIPHEYGAGLLFALAMA 115

Query: 121 AFIVSLVDFAREVRIALSELD 141
            F  +L+ FAREVR+   E+D
Sbjct: 116 PFTAALIAFAREVRLGYWEID 136


>ref|NP_951311.1| hypothetical protein GSU0250 [Geobacter sulfurreducens PCA]
 gb|AAR33584.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gb|ADI83087.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 146

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 7/143 (4%)

Query: 1   MLPDTPSVSQLSQVISQAAAPAFLLGALAAFIAVLISRLNRIIDRSIYLNQ----ISDQD 56
           M P+ P VS ++ VI  + AP FLL  + A ++VLI+RL RI+DR+  + Q    ++   
Sbjct: 1   MQPE-PVVSNIAHVIQMSVAPVFLLTGVGAILSVLINRLGRIVDRARVIEQHLADVASDG 59

Query: 57  QARCRLKADLPRLARRATMINRAIFWSIIGSISISIVIVVGFVSAFFHIQHERGVAILFI 116
           +A  RL  +L  L RR  +IN AI    I ++ + +VI + FV AF H+      A+LF+
Sbjct: 60  RALARL--ELTTLGRRMRLINWAISSCTISALLVCVVIALLFVGAFLHVNVSDVAALLFV 117

Query: 117 VSVVAFIVSLVDFAREVRIALSE 139
            +++A I  L+ F RE+ +A++ 
Sbjct: 118 FAMLALIGGLLGFLREIYLAIAT 140


>ref|YP_001952189.1| hypothetical protein Glov_1953 [Geobacter lovleyi SZ]
 gb|ACD95669.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 155

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 3/143 (2%)

Query: 1   MLPDTPSVSQLSQVISQAAAPAFLLGALAAFIAVLISRLNRIIDRSIYLN---QISDQDQ 57
           ML     V  +++ I  + AP FLL  + A ++V+ +RL RIIDR+  L    + + Q+ 
Sbjct: 1   MLRTVSDVGTVARAIQLSVAPVFLLTGIGAMLSVMTNRLGRIIDRARLLEARFETATQEG 60

Query: 58  ARCRLKADLPRLARRATMINRAIFWSIIGSISISIVIVVGFVSAFFHIQHERGVAILFIV 117
            R  ++ADL  LARRA ++ +AI      +  +  VI + F+ AF  +     VAILFI 
Sbjct: 61  HRELIRADLTTLARRAKLVGQAINLCTTTAFLVCSVIALMFIGAFLELDPSMPVAILFIC 120

Query: 118 SVVAFIVSLVDFAREVRIALSEL 140
           ++++ ++ LV F RE+ IA + L
Sbjct: 121 AMLSMVLGLVCFLREIYIATANL 143