BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0066.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766755.1| transcriptional regulator [Bradyrhizobium japon... 476 e-132 ref|YP_001240217.1| transcriptional regulator [Bradyrhizobium sp... 245 6e-63 ref|ZP_03267186.1| transcriptional regulator, LysR family [Burkh... 241 8e-62 ref|YP_004835878.1| putative LysR family transcriptional regulat... 240 2e-61 ref|ZP_03542377.1| transcriptional regulator, LysR family [Comam... 228 1e-57 >ref|NP_766755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45380.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 242/291 (83%), Positives = 262/291 (90%) Query: 1 MDTLVNLEAFLATADAGGFSAAARKLNIATSVVAKRVTQLEERIGTALFHRSTRQLRLTE 60 MD LVNL+AFLATADA GFSAAARKLN++TSVVAKRVTQLE RIGT LFHRSTRQLRLT+ Sbjct: 1 MDILVNLQAFLATADAAGFSAAARKLNVSTSVVAKRVTQLETRIGTPLFHRSTRQLRLTD 60 Query: 61 AGQRYVHRARGVVADVGDLLSRMGEKQRDLSDHLRVKAPTSLTVARLADAFTIFQKQNGS 120 AGQRYVHRARGVV D DLLSRMGEK DL DHLR+KAPTSLTVARLADAF+ FQ QN Sbjct: 61 AGQRYVHRARGVVTDATDLLSRMGEKGHDLVDHLRIKAPTSLTVARLADAFSAFQTQNPR 120 Query: 121 VNLEIVMIDRPVDPVTEGFDLAIGAFPHSFGGVVDEPLCRLPRLVCASPAYLKKHGIPKH 180 + LEIV+IDRPVDPVTEGFD+AIGAFPHSFGGVVDEPLC L RL+CASPAYLKKHG PKH Sbjct: 121 LKLEIVLIDRPVDPVTEGFDIAIGAFPHSFGGVVDEPLCALKRLLCASPAYLKKHGTPKH 180 Query: 181 PRDLVDHRCLSFLPTGPEWPFEGPRGRINIQVRPILSSNEGRVLTQCAIAGNGIALLSHY 240 PRDLV+HRCLSFLPTGPEW F+GPRGRI+IQV P+LSSNEG VL + AIAGNGIAL+SHY Sbjct: 181 PRDLVEHRCLSFLPTGPEWIFDGPRGRISIQVSPLLSSNEGHVLARSAIAGNGIALISHY 240 Query: 241 LVADALRDGALQPVLTDFPIPELWVKAAVPERRIDAAAVQALLKTLKKSLS 291 LVADALRDG L+PVL DFPIPELWVKAA+PERR +AAAVQALL LK SL+ Sbjct: 241 LVADALRDGTLKPVLRDFPIPELWVKAAIPERRRNAAAVQALLTLLKTSLA 291 >ref|YP_001240217.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36311.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 302 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 180/289 (62%) Query: 2 DTLVNLEAFLATADAGGFSAAARKLNIATSVVAKRVTQLEERIGTALFHRSTRQLRLTEA 61 D+L+N++AF+ATA G FS AAR+L +A SVV KRV+ LE + L RSTR+L+LTE Sbjct: 3 DSLLNMKAFVATARNGSFSEAARQLGLAPSVVTKRVSHLEWSMKCKLLRRSTRRLQLTEI 62 Query: 62 GQRYVHRARGVVADVGDLLSRMGEKQRDLSDHLRVKAPTSLTVARLADAFTIFQKQNGSV 121 G+RY+ + +V + ++ + + ++ H+R+KAP S L + FQ + V Sbjct: 63 GERYLETMQQIVREYDEMAAGVKRSPHEIEGHIRIKAPGSPMAIDLPRLLSSFQIKYPRV 122 Query: 122 NLEIVMIDRPVDPVTEGFDLAIGAFPHSFGGVVDEPLCRLPRLVCASPAYLKKHGIPKHP 181 LE V++DR V+PV EGFD+ + P SF GV++EPL PR++CA+P+YL + G P+H Sbjct: 123 VLEAVLVDRTVNPVEEGFDIVLTMMPSSFHGVIEEPLLAFPRVLCAAPSYLARRGQPRHI 182 Query: 182 RDLVDHRCLSFLPTGPEWPFEGPRGRINIQVRPILSSNEGRVLTQCAIAGNGIALLSHYL 241 RDL DH CL F P G W F+G G + VRP L +N +L + AG GIA++S + Sbjct: 183 RDLADHDCLVFTPMGSVWTFDGKSGLTTVAVRPRLLTNNNGLLVEALSAGGGIAVVSRKV 242 Query: 242 VADALRDGALQPVLTDFPIPELWVKAAVPERRIDAAAVQALLKTLKKSL 290 VA LR GAL VL + +P+LWVKA VP R + A VQ LL ++ + Sbjct: 243 VAPGLRSGALIEVLPEALLPDLWVKALVPTARANLARVQTLLSEIRDAF 291 >ref|ZP_03267186.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EEA01213.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 295 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 125/291 (42%), Positives = 180/291 (61%) Query: 1 MDTLVNLEAFLATADAGGFSAAARKLNIATSVVAKRVTQLEERIGTALFHRSTRQLRLTE 60 MD +++L A++ATA G FSAAAR+LN+ SVV KR+ +LE IG +LF R+TR + T Sbjct: 1 MDKILSLRAYVATARNGSFSAAARELNVVPSVVTKRINELEATIGASLFERTTRAVTPTS 60 Query: 61 AGQRYVHRARGVVADVGDLLSRMGEKQRDLSDHLRVKAPTSLTVARLADAFTIFQKQNGS 120 G V +A ++ + +L+S + D+ HLRVK PT+L RL AF FQ Sbjct: 61 LGASRVEQATQLLRKLDELISGPSARPEDVEGHLRVKVPTALATTRLRPAFARFQSMFPK 120 Query: 121 VNLEIVMIDRPVDPVTEGFDLAIGAFPHSFGGVVDEPLCRLPRLVCASPAYLKKHGIPKH 180 VNLEI ++DR + PV +G+DLAIG GGVV+E LC + LVCASP Y+ ++G+P H Sbjct: 121 VNLEIALLDRQISPVEDGYDLAIGVVLLHPGGVVEEVLCPIHLLVCASPDYIARNGVPAH 180 Query: 181 PRDLVDHRCLSFLPTGPEWPFEGPRGRINIQVRPILSSNEGRVLTQCAIAGNGIALLSHY 240 PR+L D+ C++F P EW FE + + +RP +SN+ +L A+ GNG+ LL Y Sbjct: 181 PRELPDYDCMTFFPAHAEWRFEKNGASVRVALRPRFTSNDWFLLLTAALQGNGLTLLPDY 240 Query: 241 LVADALRDGALQPVLTDFPIPELWVKAAVPERRIDAAAVQALLKTLKKSLS 291 + DAL+ G L VL D+ +P ++A +PE R A+++LL LK L+ Sbjct: 241 VAGDALKTGKLVHVLPDWTVPPGEIRAVIPEYRAADVALRSLLNILKGELA 291 >ref|YP_004835878.1| putative LysR family transcriptional regulator [Sphingobium sp. SYK-6] dbj|BAK67421.1| putative LysR family transcriptional regulator [Sphingobium sp. SYK-6] Length = 303 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/286 (41%), Positives = 176/286 (61%) Query: 1 MDTLVNLEAFLATADAGGFSAAARKLNIATSVVAKRVTQLEERIGTALFHRSTRQLRLTE 60 MDTL+N+ AFLA + G + AARK NIA SVV KR+ +LE+ +G LF R+ R+ LT Sbjct: 1 MDTLLNMRAFLAVVECGSLAGAARKFNIAPSVVTKRIGRLEDELGAVLFIRTPRKAELTS 60 Query: 61 AGQRYVHRARGVVADVGDLLSRMGEKQRDLSDHLRVKAPTSLTVARLADAFTIFQKQNGS 120 G+R + R R +V +++S ++ L HLR+K PT++ + F F + + Sbjct: 61 FGERQLPRIRALVRQTDEVISGARRSRQALDGHLRIKCPTTVASSYFGRFFADFVQSHAG 120 Query: 121 VNLEIVMIDRPVDPVTEGFDLAIGAFPHSFGGVVDEPLCRLPRLVCASPAYLKKHGIPKH 180 V++++V++DR V+P+ EGFDLAIGA S+ GV+D PLC P ++CA+P+YL + G PKH Sbjct: 121 VSIDLVLVDRSVNPIEEGFDLAIGAMAASYAGVIDVPLCEHPMVICAAPSYLAREGHPKH 180 Query: 181 PRDLVDHRCLSFLPTGPEWPFEGPRGRINIQVRPILSSNEGRVLTQCAIAGNGIALLSHY 240 PR+LV+H CL G W FE G + + V + N VL A+ G GIA+LS + Sbjct: 181 PRELVEHDCLGSQSIGGTWVFESESGDLAVNVTSRFAVNTAMVLRDAALRGAGIAMLSEF 240 Query: 241 LVADALRDGALQPVLTDFPIPELWVKAAVPERRIDAAAVQALLKTL 286 + DA+R G L ++ +FP LW+KA VP ++ VQAL++ + Sbjct: 241 VSRDAVRAGRLVRLMPEFPAKSLWLKALVPNVKMSQPLVQALVEDI 286 >ref|ZP_03542377.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gb|EED66663.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 292 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/287 (41%), Positives = 171/287 (59%) Query: 1 MDTLVNLEAFLATADAGGFSAAARKLNIATSVVAKRVTQLEERIGTALFHRSTRQLRLTE 60 MD + +++ F+A G FS AAR L + SV+AKRV+QLE + T LF R+TR++ +TE Sbjct: 1 MDIVTHVQTFVAVVRYGNFSEAARHLGVVPSVIAKRVSQLETELNTKLFERTTRRVTVTE 60 Query: 61 AGQRYVHRARGVVADVGDLLSRMGEKQRDLSDHLRVKAPTSLTVARLADAFTIFQKQNGS 120 G++ RA VVA+ DL+ + + HL+V APT+LT+ L F F ++N Sbjct: 61 QGEKLYARATNVVAEFEDLVRSVERDEGKPEGHLKVMAPTTLTMTELGQVFCGFLQKNPG 120 Query: 121 VNLEIVMIDRPVDPVTEGFDLAIGAFPHSFGGVVDEPLCRLPRLVCASPAYLKKHGIPKH 180 + LE+ + DR +P GFD+AI S+ GVVD PL + L+CASP YL+ H H Sbjct: 121 ITLELTLEDRSTNPSEGGFDMAISGRAASYEGVVDVPLRPVKPLLCASPFYLRAHTQINH 180 Query: 181 PRDLVDHRCLSFLPTGPEWPFEGPRGRINIQVRPILSSNEGRVLTQCAIAGNGIALLSHY 240 PRDL D CL F TG W F+ RG ++I V P L +++ R L Q A+AG G+ALL Y Sbjct: 181 PRDLADCACLVFSATGRNWTFQSNRGTLSIDVHPRLMADDNRTLLQAAVAGLGVALLPTY 240 Query: 241 LVADALRDGALQPVLTDFPIPELWVKAAVPERRIDAAAVQALLKTLK 287 + ++A+ G L+ +L + E W KA VP RR+ V+ALL L+ Sbjct: 241 IASEAIAAGELEILLPGYAPQENWFKAYVPRRRMGVQRVKALLTYLQ 287