BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0055.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766747.1| coenzyme A ligase [Bradyrhizobium japonicum USD... 504 e-141 ref|YP_001243256.1| putative AMP-dependent synthetase and ligase... 476 e-132 ref|YP_001202855.1| putative AMP-dependent synthetase and ligase... 469 e-130 ref|YP_913984.1| benzoate-CoA ligase family [Paracoccus denitrif... 390 e-106 ref|YP_002540346.1| long-chain-fatty-acid-CoA ligase protein [Ag... 355 1e-95 >ref|NP_766747.1| coenzyme A ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC45372.1| blr0107 [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/312 (79%), Positives = 269/312 (86%) Query: 4 IADQVPLDNPGAREIGFTISERYNASCILFDNLGNGNAERLALTGPAGTRTYRELCTEAA 63 I DQVP D+ GAREIGF + E YNAS +LFDNLG G ++LAL GPAGTRTY ELC EA Sbjct: 5 ICDQVPADSAGAREIGFAVPEIYNASRVLFDNLGKGYGDKLALIGPAGTRTYAELCAEAC 64 Query: 64 RWGHAFRSLGLQRGDRILLFLDDTPAYPAAFFGAVRAGFVPLLINTLTTPELLQFYLSDA 123 RWG+ F SLGL+RGDR+LLFLDDTPAYPAAFFGAVRAGFVPLLINTLT P+LLQFYL+D+ Sbjct: 65 RWGNGFISLGLKRGDRVLLFLDDTPAYPAAFFGAVRAGFVPLLINTLTPPDLLQFYLADS 124 Query: 124 GAQVAVTDAEFCARFNAEACKDTPLRTLVVVNGAAGDHAVAEARNAGDWLQGFPIELDAA 183 GA VAV ++EFCARFNAEA KDT LRTL+VVNG G+ A A A WL FP EL A Sbjct: 125 GATVAVAESEFCARFNAEARKDTSLRTLIVVNGEMGERAAPAAVAAASWLAQFPAELAEA 184 Query: 184 DTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSERAFARNVLKLEPGDICFSVPKIFFAY 243 +THRNEMAFWMYSSGSTGRPKGIVHLQHDM YSE AFA+NVLKL P DICFSVPKIFFAY Sbjct: 185 NTHRNEMAFWMYSSGSTGRPKGIVHLQHDMTYSEVAFAQNVLKLTPDDICFSVPKIFFAY 244 Query: 244 GFGNSITFPFSVGAATLLLPGQPKPAAIFAAIGQYRPTVFFGLPTLYISLTKAEGAEQTD 303 GFGNS+TFPFSVGAATLLLPGQPKPA IFAAI QYRPTVFFGLPTLY SLTKAEGA+QT+ Sbjct: 245 GFGNSVTFPFSVGAATLLLPGQPKPATIFAAIEQYRPTVFFGLPTLYTSLTKAEGAQQTN 304 Query: 304 FSSLRMAVSAAE 315 FSSLRMA+SAAE Sbjct: 305 FSSLRMALSAAE 316 >ref|YP_001243256.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. BTAi1] gb|ABQ39350.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. BTAi1] Length = 537 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/314 (76%), Positives = 266/314 (84%) Query: 2 TGIADQVPLDNPGAREIGFTISERYNASCILFDNLGNGNAERLALTGPAGTRTYRELCTE 61 TGIAD+VP D+ GAREIGF I +RYNAS +LFDNL GNA + AL GPAG R+Y ELC + Sbjct: 3 TGIADEVPRDSAGAREIGFAIPDRYNASRVLFDNLARGNANKPALIGPAGQRSYAELCAD 62 Query: 62 AARWGHAFRSLGLQRGDRILLFLDDTPAYPAAFFGAVRAGFVPLLINTLTTPELLQFYLS 121 A RWGH F SLGL RGDR+LLFLDDTPAYPAAFFGAVRAGFVPLLINTLT P+LLQFYL+ Sbjct: 63 ACRWGHGFASLGLARGDRVLLFLDDTPAYPAAFFGAVRAGFVPLLINTLTPPDLLQFYLA 122 Query: 122 DAGAQVAVTDAEFCARFNAEACKDTPLRTLVVVNGAAGDHAVAEARNAGDWLQGFPIELD 181 D+GA+VAV DA+F ARF+A+AC +T L TL+VVNG + A WL GF EL Sbjct: 123 DSGAKVAVADADFAARFDAQACAETALHTLIVVNGETPGTSAPSTLTADGWLHGFATELA 182 Query: 182 AADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSERAFARNVLKLEPGDICFSVPKIFF 241 ADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSE+AFARNVL+L P DICFSVPKIFF Sbjct: 183 EADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSEQAFARNVLRLRPDDICFSVPKIFF 242 Query: 242 AYGFGNSITFPFSVGAATLLLPGQPKPAAIFAAIGQYRPTVFFGLPTLYISLTKAEGAEQ 301 AYGFGN+ITFPFS GA TLLLPGQPKPAAIF AIG++RPTVFFGLPTLY +LTKA+GA + Sbjct: 243 AYGFGNAITFPFSAGATTLLLPGQPKPAAIFNAIGRFRPTVFFGLPTLYTALTKADGARE 302 Query: 302 TDFSSLRMAVSAAE 315 TDFSSLR+AVSAAE Sbjct: 303 TDFSSLRLAVSAAE 316 >ref|YP_001202855.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. ORS 278] emb|CAL74615.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. ORS 278] Length = 537 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/313 (74%), Positives = 262/313 (83%), Gaps = 2/313 (0%) Query: 4 IADQVPLDNPGAREIGFTISERYNASCILFDNLGNGNAERLALTGPAGTRTYRELCTEAA 63 IADQVP D+PGAREIGF I RYNAS +LFDNL GNA + AL G AG R+Y ELC +A Sbjct: 5 IADQVPSDSPGAREIGFAIPARYNASRVLFDNLAKGNASKPALIGSAGERSYAELCVDAC 64 Query: 64 RWGHAFRSLGLQRGDRILLFLDDTPAYPAAFFGAVRAGFVPLLINTLTTPELLQFYLSDA 123 RWG+ SLGL RGDR+LLFLDDTPAYPAAFFGAVRAG+VPLLINTLT P+LLQFYL+D+ Sbjct: 65 RWGNGLASLGLTRGDRVLLFLDDTPAYPAAFFGAVRAGYVPLLINTLTPPDLLQFYLADS 124 Query: 124 GAQVAVTDAEFCARFNAEACKDTPLRTLVVVNGAAGDHAVAEARNAGD-WLQGFPIELDA 182 GA+VAV DAEF RF+++AC +T L+TL+VVNG A A A + AGD WL F EL Sbjct: 125 GAKVAVADAEFAGRFDSQACAETALQTLIVVNGVAPATA-APSTIAGDRWLADFAAELAE 183 Query: 183 ADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSERAFARNVLKLEPGDICFSVPKIFFA 242 ADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSE+AFARNVL+L DICFSVPKIFFA Sbjct: 184 ADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSEQAFARNVLRLRADDICFSVPKIFFA 243 Query: 243 YGFGNSITFPFSVGAATLLLPGQPKPAAIFAAIGQYRPTVFFGLPTLYISLTKAEGAEQT 302 YGFGNSITFPF+ GA TLLLPGQPKPAAIF AIG++RPTVFFGLPTLY +LTKA+ A + Sbjct: 244 YGFGNSITFPFTAGATTLLLPGQPKPAAIFDAIGRFRPTVFFGLPTLYTALTKADRAVEA 303 Query: 303 DFSSLRMAVSAAE 315 D SSLR++VSAAE Sbjct: 304 DLSSLRLSVSAAE 316 >ref|YP_913984.1| benzoate-CoA ligase family [Paracoccus denitrificans PD1222] gb|ABL68288.1| benzoate-CoA ligase family [Paracoccus denitrificans PD1222] Length = 554 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/377 (57%), Positives = 256/377 (67%), Gaps = 3/377 (0%) Query: 2 TGIADQVPLDNPGAREIGFTISERYNASCILFDNLGNGNAERLALTGPAGTRTYRELCTE 61 T I D+VPLD G+REIGF I E YNAS ILFDNL G +A+ GP G+RTY +LC E Sbjct: 12 TDIEDRVPLDALGSREIGFAIPETYNASAILFDNLDRGRGGHMAVIGPGGSRTYAQLCAE 71 Query: 62 AARWGHAFRSLGLQRGDRILLFLDDTPAYPAAFFGAVRAGFVPLLINTLTTPELLQFYLS 121 A+R+G+A GL +GDRILLFLDD+PAYPAA FGA+RAG VPLLINTLT PELL FYL Sbjct: 72 ASRFGNALLGAGLTQGDRILLFLDDSPAYPAALFGAIRAGLVPLLINTLTPPELLNFYLK 131 Query: 122 DAGAQVAVTDAEFCARFNAEACKDTPLRTLVVVNGAAGDHAVAEARNAGDWLQGFPIELD 181 D+ ++VA+ DA F ARF+ AC +T L LVVVNGAA + + + A +LQG L Sbjct: 132 DSSSRVAIADAAFAARFDDVACAETALERLVVVNGAAPEDSPVPVQTAEAFLQGVSDSLA 191 Query: 182 AADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSERAFARNVLKLEPGDICFSVPKIFF 241 A T RN+MAFW YSSGSTGRPKGIVHLQHDMAY+ +F R+VL L+PGDICFSVPKIFF Sbjct: 192 PAPTGRNDMAFWQYSSGSTGRPKGIVHLQHDMAYTALSFGRHVLDLQPGDICFSVPKIFF 251 Query: 242 AYGFGNSITFPFSVGAATLLLPGQPKPAAIFAAIGQYRPTVFFGLPTLYISLTKAEGAEQ 301 AYG GNS+TFPFSVGA ++LLPGQP+PAA+F AI RPT FFGLPTLY ++T A A Sbjct: 252 AYGLGNSLTFPFSVGATSVLLPGQPRPAAVFEAIATCRPTHFFGLPTLYTAMTSAPEAAT 311 Query: 302 TDFSSLRMAVSAAEGAVGRCVQRLEAAHRARDHRRPRLDRSAARLSQQPRGTKEARRRRP 361 D SSL++ +SAAE EA H S L T+EARR Sbjct: 312 ADLSSLKLCLSAAEVLANEVA---EAWRALSGHDIIEGLGSTEVLHIYLSNTREARRPGA 368 Query: 362 ARARLRDHAARQRRPRG 378 A R+ + R P G Sbjct: 369 AGLRVPGYEVAIRDPDG 385 >ref|YP_002540346.1| long-chain-fatty-acid-CoA ligase protein [Agrobacterium radiobacter K84] gb|ACM28751.1| long-chain-fatty-acid-CoA ligase protein [Agrobacterium radiobacter K84] Length = 910 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 179/313 (57%), Positives = 224/313 (71%), Gaps = 6/313 (1%) Query: 4 IADQVPLDNPGAREIGFTISERYNASCILFDNLGNGNAERLALTGPAGTRTYRELCTEAA 63 + D V PG EIGF + N S IL+DNL N ++ A+ GP G+ TY EL +AA Sbjct: 383 VTDPVGDGLPGELEIGFNRAAHPNCSSILWDNLAR-NPDKSAIIGPTGSMTYAELIADAA 441 Query: 64 RWGHAFRSLGLQRGDRILLFLDDTPAYPAAFFGAVRAGFVPLLINTLTTPELLQFYLSDA 123 RWG+AFR+ GL+RGDRI FLDDTP YPAAFFGAVRAGFVP+L+NT+T + L +YL D Sbjct: 442 RWGNAFRAAGLERGDRIPFFLDDTPTYPAAFFGAVRAGFVPVLLNTMTPIDTLNYYLKDT 501 Query: 124 GAQVAVTDAEFCARFNAEACKDTPLRTLVVVNGAA-GDHAVAEARNAGDWLQGFPIELDA 182 GA++A+++A +RF EA T L T+VV NGA G+ V A D+L P LD Sbjct: 502 GARLALSEAALLSRFTGEALVGTALETVVVANGAIRGERQV----RAEDFLADQPATLDC 557 Query: 183 ADTHRNEMAFWMYSSGSTGRPKGIVHLQHDMAYSERAFARNVLKLEPGDICFSVPKIFFA 242 +DT ++MAFWMYSSG+TG+PKGIVHL HDMAY++ +F NVLKL DI FSVPKIFFA Sbjct: 558 SDTGPDDMAFWMYSSGTTGKPKGIVHLHHDMAYTQASFGDNVLKLRSDDIVFSVPKIFFA 617 Query: 243 YGFGNSITFPFSVGAATLLLPGQPKPAAIFAAIGQYRPTVFFGLPTLYISLTKAEGAEQT 302 YGFGNS+TFPFS+GA LL+PG+P P +I A I YRPTVFFGLPTLY +L +A+ + Sbjct: 618 YGFGNSLTFPFSIGATVLLMPGRPDPVSILAFIEAYRPTVFFGLPTLYTALCRADAVQHR 677 Query: 303 DFSSLRMAVSAAE 315 D SS+R ++SAAE Sbjct: 678 DLSSIRQSMSAAE 690