BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0043.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767742.1| hypothetical protein blr1102 [Bradyrhizobium ja... 723 0.0 ref|YP_001236935.1| hypothetical protein BBta_0765 [Bradyrhizobi... 701 0.0 ref|YP_001208586.1| hypothetical protein BRADO6773 [Bradyrhizobi... 690 0.0 ref|YP_783779.1| putative OpgC protein [Rhodopseudomonas palustr... 644 0.0 ref|YP_534753.1| putative OpgC protein [Rhodopseudomonas palustr... 644 0.0 >ref|NP_767742.1| hypothetical protein blr1102 [Bradyrhizobium japonicum USDA 110] dbj|BAC46367.1| blr1102 [Bradyrhizobium japonicum USDA 110] Length = 415 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/417 (84%), Positives = 382/417 (91%), Gaps = 4/417 (0%) Query: 3 SIADPIAGSPVADAKAEVKAEAEAKVAAPAITLPATGERELRLDLFRGLALWLIFIDHLP 62 +IAD + GS +A AK A+A+ + AAPAI+LPA GERELRLDLFRGLALWLIFIDHLP Sbjct: 2 TIADQVTGSTIAGAK---PADAKPRAAAPAISLPAIGERELRLDLFRGLALWLIFIDHLP 58 Query: 63 TNLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAMLEGGFVIATARILRRVWQIYVAH 122 ++LLTW TIRNYGFSDATEIFIFISGYTAAFVYGRAMLE G VIATARI+RRVWQIYVAH Sbjct: 59 SSLLTWFTIRNYGFSDATEIFIFISGYTAAFVYGRAMLESGVVIATARIMRRVWQIYVAH 118 Query: 123 VFLFTIFLAEISYVATSFENPLYSEEMGIMDFLKQPDVTIVQALLLRFRPVNMDVLPLYI 182 VFLFTIFLAEISYVATSFENPLY+EEMGIMDFLKQPDVTIVQALLLRFRPVNMDVLPLYI Sbjct: 119 VFLFTIFLAEISYVATSFENPLYTEEMGIMDFLKQPDVTIVQALLLRFRPVNMDVLPLYI 178 Query: 183 VLMLFLPLILWLMKWKPDVTLGLSVLLYALTWQFDLYLSAYPNGFWAFNPFAWQLLFVFG 242 VLML LPLILW MKWKPDVTLGLSV+LYA+TW++DLY SAYPNGFWAFNP AWQLLFVFG Sbjct: 179 VLMLALPLILWSMKWKPDVTLGLSVVLYAVTWEYDLYFSAYPNGFWAFNPLAWQLLFVFG 238 Query: 243 AWCALGGARRMSRILSSNITMWICIVYLVAAFFVTLTWYVPQLGHIMPKVIEQWMYPINK 302 AWCALGGARRMSRIL+S +TMWI I Y+VAAF+VTLTWYVPQL H+MPK +EQWMYPI+K Sbjct: 239 AWCALGGARRMSRILASPVTMWIAIAYIVAAFYVTLTWYVPQLSHLMPKRLEQWMYPIDK 298 Query: 303 TDLDVLRFAHFLALAALTVRFLPRDWPGLKSPWLRPLILCGQHSLEIFCLGVFLAFAGHF 362 TDLDVLRF HFLALAALTVRFLPRDWPGLKSPWLRPLILCG HSLEIFCLGVFLAFAGHF Sbjct: 299 TDLDVLRFTHFLALAALTVRFLPRDWPGLKSPWLRPLILCGSHSLEIFCLGVFLAFAGHF 358 Query: 363 VLAEVSGGAALHALISVCGILIMCGMAWIISWYKHSADK-GASKKGAAGNADMAGGG 418 +LAEVSGGA +HA+IS+ GILIM G+AW+ISWYK ADK GA K A GNAD+AGGG Sbjct: 359 ILAEVSGGAVMHAVISLSGILIMWGVAWVISWYKRVADKSGAKTKNAVGNADLAGGG 415 >ref|YP_001236935.1| hypothetical protein BBta_0765 [Bradyrhizobium sp. BTAi1] gb|ABQ33029.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 421 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/421 (83%), Positives = 380/421 (90%), Gaps = 3/421 (0%) Query: 1 MSSIADPIAGSPVADAKAEVKAEAEAKVAAPA---ITLPATGERELRLDLFRGLALWLIF 57 M+SIAD IAG V A A A A+ A IT PA GERELRLDLFRGLALWLIF Sbjct: 1 MTSIADRIAGPSVPGAAAPPAPAETAAPASVAAPAITFPAVGERELRLDLFRGLALWLIF 60 Query: 58 IDHLPTNLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAMLEGGFVIATARILRRVWQ 117 IDHLP NLLTW TIRNYGFSDATEIFIFISGYTAAFVYGRAM + GF++ATARILRRVWQ Sbjct: 61 IDHLPPNLLTWFTIRNYGFSDATEIFIFISGYTAAFVYGRAMQDAGFIVATARILRRVWQ 120 Query: 118 IYVAHVFLFTIFLAEISYVATSFENPLYSEEMGIMDFLKQPDVTIVQALLLRFRPVNMDV 177 IYVAHVFLFTIFLAEISYVATSFENPLY+EEMGIMDFLKQPDVTIVQAL+LRFRPVNMDV Sbjct: 121 IYVAHVFLFTIFLAEISYVATSFENPLYTEEMGIMDFLKQPDVTIVQALILRFRPVNMDV 180 Query: 178 LPLYIVLMLFLPLILWLMKWKPDVTLGLSVLLYALTWQFDLYLSAYPNGFWAFNPFAWQL 237 LPLYIVLMLFLPLILWLM+W+PDVTLGLSV+LYA+TW+FDLYLSAYPNGFWAFNPFAWQL Sbjct: 181 LPLYIVLMLFLPLILWLMRWRPDVTLGLSVVLYAVTWEFDLYLSAYPNGFWAFNPFAWQL 240 Query: 238 LFVFGAWCALGGARRMSRILSSNITMWICIVYLVAAFFVTLTWYVPQLGHIMPKVIEQWM 297 LFVFGAWCALGGA+RMSRIL+S +T+ IC+ YLVAAFFVTLTWY+PQLGH+MP+ IEQWM Sbjct: 241 LFVFGAWCALGGAKRMSRILNSPVTLGICVAYLVAAFFVTLTWYIPQLGHLMPRRIEQWM 300 Query: 298 YPINKTDLDVLRFAHFLALAALTVRFLPRDWPGLKSPWLRPLILCGQHSLEIFCLGVFLA 357 YPI+KTDLDVLRFAHFLALAALTV +LP+DWP LKS WLRPLI+CGQHSLEIFCLGVFLA Sbjct: 301 YPIDKTDLDVLRFAHFLALAALTVHYLPKDWPPLKSRWLRPLIVCGQHSLEIFCLGVFLA 360 Query: 358 FAGHFVLAEVSGGAALHALISVCGILIMCGMAWIISWYKHSADKGASKKGAAGNADMAGG 417 FAGHFVLAEVSGGA +HALIS+ GIL M G+A +ISWYK ADKGA++KGA NADMAGG Sbjct: 361 FAGHFVLAEVSGGAMMHALISLSGILAMWGVASLISWYKREADKGAARKGARSNADMAGG 420 Query: 418 G 418 G Sbjct: 421 G 421 >ref|YP_001208586.1| hypothetical protein BRADO6773 [Bradyrhizobium sp. ORS 278] emb|CAL80371.1| conserved hypothetical protein, putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 429 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/429 (79%), Positives = 378/429 (88%), Gaps = 11/429 (2%) Query: 1 MSSIADPIAGSPVADAKAEVKAEAEAKV-----------AAPAITLPATGERELRLDLFR 49 M+SIAD +AG V A A AE+ A I+ PA GERELRLDLFR Sbjct: 1 MTSIADRLAGPSVPGATAAPAPGAESAAAASPAAPASKATASKISFPAVGERELRLDLFR 60 Query: 50 GLALWLIFIDHLPTNLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAMLEGGFVIATA 109 GLALWLIFIDHLP N+LTW TIRNYGFSDATEIFIFISGYTAAFVYGRAM + GF++ATA Sbjct: 61 GLALWLIFIDHLPPNILTWFTIRNYGFSDATEIFIFISGYTAAFVYGRAMEDAGFIVATA 120 Query: 110 RILRRVWQIYVAHVFLFTIFLAEISYVATSFENPLYSEEMGIMDFLKQPDVTIVQALLLR 169 RILRRVWQIYVAHVFLFTIFLAEISYVATSFENPLY+EEMGIMDFLKQPDVTIVQAL+LR Sbjct: 121 RILRRVWQIYVAHVFLFTIFLAEISYVATSFENPLYTEEMGIMDFLKQPDVTIVQALILR 180 Query: 170 FRPVNMDVLPLYIVLMLFLPLILWLMKWKPDVTLGLSVLLYALTWQFDLYLSAYPNGFWA 229 FRPVNMDVLPLYIVLMLFLPLIL LM+W+PD TLGLSV+LYA+TW+ DLYLSAYPNGFWA Sbjct: 181 FRPVNMDVLPLYIVLMLFLPLILALMRWRPDFTLGLSVVLYAVTWELDLYLSAYPNGFWA 240 Query: 230 FNPFAWQLLFVFGAWCALGGARRMSRILSSNITMWICIVYLVAAFFVTLTWYVPQLGHIM 289 FNPFAWQLLFVFGAWCALGGA+RMSRIL+S IT+ IC+ YLVAAFFVTLTWY+PQLGH+M Sbjct: 241 FNPFAWQLLFVFGAWCALGGAKRMSRILNSPITLGICVAYLVAAFFVTLTWYIPQLGHLM 300 Query: 290 PKVIEQWMYPINKTDLDVLRFAHFLALAALTVRFLPRDWPGLKSPWLRPLILCGQHSLEI 349 P++IEQWMYPI+KTDLDVLRFAHFLALAALTV +LP+DWP LKS WLRPLI+CGQHSLEI Sbjct: 301 PRLIEQWMYPIDKTDLDVLRFAHFLALAALTVHYLPKDWPLLKSRWLRPLIVCGQHSLEI 360 Query: 350 FCLGVFLAFAGHFVLAEVSGGAALHALISVCGILIMCGMAWIISWYKHSADKGASKKGAA 409 FCLGVFLAFAGHFVLAEVSGGA +HA+IS+CGIL M G+A +ISWYK ADKGA++KG Sbjct: 361 FCLGVFLAFAGHFVLAEVSGGAMMHAMISLCGILAMWGVASLISWYKREADKGAARKGVR 420 Query: 410 GNADMAGGG 418 NAD+AGGG Sbjct: 421 ANADLAGGG 429 >ref|YP_783779.1| putative OpgC protein [Rhodopseudomonas palustris BisA53] gb|ABJ08799.1| putative OpgC protein [Rhodopseudomonas palustris BisA53] Length = 411 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/417 (75%), Positives = 360/417 (86%), Gaps = 8/417 (1%) Query: 1 MSSIADPIAGSPVADAKAEVKAEAEAKVAAPAITLPATGERELRLDLFRGLALWLIFIDH 60 M+S+A+P + P D+ A A+ A PA + T +RELRLDLFRGLALWLIFIDH Sbjct: 1 MTSVAEPTSAVP-PDSPA-----VPARPAVPATPVAGTSQRELRLDLFRGLALWLIFIDH 54 Query: 61 LPTNLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAMLEGGFVIATARILRRVWQIYV 120 LP NLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAM + GF++A+ARI++RVWQIYV Sbjct: 55 LPANLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAMRDSGFMVASARIMKRVWQIYV 114 Query: 121 AHVFLFTIFLAEISYVATSFENPLYSEEMGIMDFLKQPDVTIVQALLLRFRPVNMDVLPL 180 AHVFLF IFLAEISYVATSFENPLY+EEMGI+DFLKQPDVTI+QALLLRFRPVNMDVLPL Sbjct: 115 AHVFLFVIFLAEISYVATSFENPLYTEEMGILDFLKQPDVTIIQALLLRFRPVNMDVLPL 174 Query: 181 YIVLMLFLPLILWLMKWKPDVTLGLSVLLYALTWQFDLYLSAYPNGFWAFNPFAWQLLFV 240 YIVLM FLP +LWLM+ D TL LSV LYA TW FDLYLSAYP+G WAFNPFAWQLLFV Sbjct: 175 YIVLMFFLPPMLWLMRRAADFTLALSVALYAATWHFDLYLSAYPSGVWAFNPFAWQLLFV 234 Query: 241 FGAWCALGGARRMSRILSSNITMWICIVYLVAAFFVTLTWYVPQLGHIMPKVIEQWMYPI 300 FGAWCA+GGA+RM+RILSSN+T+ I I YL+AAFFVTLTWYVPQL +MP++IEQWMYPI Sbjct: 235 FGAWCAIGGAQRMARILSSNVTLAISIAYLLAAFFVTLTWYVPQLHPLMPRLIEQWMYPI 294 Query: 301 NKTDLDVLRFAHFLALAALTVRFLPRDWPGLKSPWLRPLILCGQHSLEIFCLGVFLAFAG 360 NKTDLDVLRFAHFLALAA+TVRFL +DW GL+SPWLRPL+LCGQHSLEIFCLG+FLAFAG Sbjct: 295 NKTDLDVLRFAHFLALAAITVRFLRKDWSGLRSPWLRPLVLCGQHSLEIFCLGIFLAFAG 354 Query: 361 HFVLAEVSGGAALHALISVCGILIMCGMAWIISWYKHSADKGASKKGAAGNADMAGG 417 HFVLAE++GGA +H L+S+ GI++M AW+ SWYK A KG+++ +AD+AGG Sbjct: 355 HFVLAEIAGGALMHFLVSLTGIILMSSAAWLFSWYKRVAAKGSARD--TNDADLAGG 409 >ref|YP_534753.1| putative OpgC protein [Rhodopseudomonas palustris BisB18] gb|ABD90434.1| putative OpgC protein [Rhodopseudomonas palustris BisB18] Length = 417 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/379 (82%), Positives = 346/379 (91%), Gaps = 1/379 (0%) Query: 41 RELRLDLFRGLALWLIFIDHLPTNLLTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAML 100 RELRLDLFRGLALWLIFIDHLP N+LTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAML Sbjct: 40 RELRLDLFRGLALWLIFIDHLPPNILTWLTIRNYGFSDATEIFIFISGYTAAFVYGRAML 99 Query: 101 EGGFVIATARILRRVWQIYVAHVFLFTIFLAEISYVATSFENPLYSEEMGIMDFLKQPDV 160 E GFV+A ARIL+RVWQIYVAHVFLFTIFLAEISYVATSFE+PLYSEEMGI+DFLKQPDV Sbjct: 100 EQGFVVAAARILKRVWQIYVAHVFLFTIFLAEISYVATSFESPLYSEEMGILDFLKQPDV 159 Query: 161 TIVQALLLRFRPVNMDVLPLYIVLMLFLPLILWLMKWKPDVTLGLSVLLYALTWQFDLYL 220 TIVQALLLRFRPVNMDVLPLYIVLM FLP ILWLM+ KPD+ L LSV LYA TW+FDLYL Sbjct: 160 TIVQALLLRFRPVNMDVLPLYIVLMFFLPPILWLMQRKPDLALTLSVALYAATWEFDLYL 219 Query: 221 SAYPNGFWAFNPFAWQLLFVFGAWCALGGARRMSRILSSNITMWICIVYLVAAFFVTLTW 280 SAYP+G WAFNPFAWQLLFVFGAWCALGGA+RM+RILSSNIT+ I I YL+AAFFVTLTW Sbjct: 220 SAYPSGVWAFNPFAWQLLFVFGAWCALGGAQRMARILSSNITLAISIAYLLAAFFVTLTW 279 Query: 281 YVPQLGHIMPKVIEQWMYPINKTDLDVLRFAHFLALAALTVRFLPRDWPGLKSPWLRPLI 340 YVPQL +MP++IEQWMYPINKTDLDVLRFAHFLALAA+TVRFL RDWPGLKSPWLRP+I Sbjct: 280 YVPQLHPLMPRLIEQWMYPINKTDLDVLRFAHFLALAAITVRFLHRDWPGLKSPWLRPVI 339 Query: 341 LCGQHSLEIFCLGVFLAFAGHFVLAEVSGGAALHALISVCGILIMCGMAWIISWYKHSAD 400 LCGQHSLEIFCLG+FLAFAG+FVLAE++GGA +H L+SV G+++M AW+ SWYK A Sbjct: 340 LCGQHSLEIFCLGIFLAFAGYFVLAEIAGGALMHFLVSVSGVVLMSAAAWLFSWYKRVAA 399 Query: 401 KGASKKGAAGNADMAGGGA 419 K A + A+ +AD+AGG A Sbjct: 400 K-AGPRAASNDADLAGGAA 417