BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0040.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767739.1| ornithine carbamoyltransferase [Bradyrhizobium ... 582 e-164 ref|YP_783782.1| ornithine carbamoyltransferase [Rhodopseudomona... 548 e-154 ref|YP_001236930.1| ornithine carbamoyltransferase [Bradyrhizobi... 544 e-153 ref|YP_001208590.1| ornithine carbamoyltransferase [Bradyrhizobi... 543 e-152 ref|YP_484406.1| ornithine carbamoyltransferase [Rhodopseudomona... 543 e-152 >ref|NP_767739.1| ornithine carbamoyltransferase [Bradyrhizobium japonicum USDA 110] sp|Q89VE8.1|OTC_BRAJA RecName: Full=Ornithine carbamoyltransferase; Short=OTCase dbj|BAC46364.1| ornithine carbamoyltransferase [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/307 (91%), Positives = 294/307 (95%), Gaps = 1/307 (0%) Query: 1 MSKPVRHFLDINELPLGELRNMLSAGAAMKAKLKAHEKGRKPLEGKTLAMIFERPSTRTR 60 MSK +HFLDINELPL EL++ML A +AMKAK KAH+ R PLEGKTLAMIFERPSTRTR Sbjct: 1 MSKSPKHFLDINELPLSELKSMLDASSAMKAKQKAHQPVR-PLEGKTLAMIFERPSTRTR 59 Query: 61 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAAH 120 VSFDV MRQLGGE IMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAA+ Sbjct: 60 VSFDVAMRQLGGEPIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAAN 119 Query: 121 ATVPVINGLTRRSHPCQVMADLMTYEENRGSIEGKTVAWTGDDNNVLASWAHAAERFKFQ 180 ATVPVINGLTRRSHPCQVMADL+TY+E+RG IEG+TVAWTGDDNNVLASWAHAAERFKFQ Sbjct: 120 ATVPVINGLTRRSHPCQVMADLLTYQEHRGPIEGRTVAWTGDDNNVLASWAHAAERFKFQ 179 Query: 181 LNVATPPELSPKKPMRDWIKATGAPIMLGSDPEAAVRGADCVVTDTWVSMGDKEGEHRHN 240 LNVATPPEL+PKK MRDWIKA+GAPIMLG+DPEAAVRGADCVVTDTWVSMGDKEGEHRHN Sbjct: 180 LNVATPPELAPKKAMRDWIKASGAPIMLGTDPEAAVRGADCVVTDTWVSMGDKEGEHRHN 239 Query: 241 VLRPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 VL+PYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL Sbjct: 240 VLKPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 299 Query: 301 AWCFDAV 307 AWCFDAV Sbjct: 300 AWCFDAV 306 >ref|YP_783782.1| ornithine carbamoyltransferase [Rhodopseudomonas palustris BisA53] sp|Q07GY2.1|OTC_RHOP5 RecName: Full=Ornithine carbamoyltransferase; Short=OTCase gb|ABJ08802.1| ornithine carbamoyltransferase [Rhodopseudomonas palustris BisA53] Length = 312 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/313 (84%), Positives = 286/313 (91%), Gaps = 6/313 (1%) Query: 1 MSKPVRHFLDINELPLGELRNMLSAGAAMKAKLKAHEKGR-----KPLEGKTLAMIFERP 55 MS RHFLD++E+P ELR +L AG A+KAKLK+ +K R KPLEGKTLAMIFERP Sbjct: 1 MSNAPRHFLDLDEMPTKELRAVLDAGVALKAKLKS-QKARNTLREKPLEGKTLAMIFERP 59 Query: 56 STRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALL 115 STRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALL Sbjct: 60 STRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALL 119 Query: 116 ELAAHATVPVINGLTRRSHPCQVMADLMTYEENRGSIEGKTVAWTGDDNNVLASWAHAAE 175 ELA ATVPVINGLTRRSHPCQVMADLMT+EE+RG IEG+T+AWTGDDNNVLASWAHAAE Sbjct: 120 ELAEFATVPVINGLTRRSHPCQVMADLMTFEEHRGPIEGRTIAWTGDDNNVLASWAHAAE 179 Query: 176 RFKFQLNVATPPELSPKKPMRDWIKATGAPIMLGSDPEAAVRGADCVVTDTWVSMGDKEG 235 RF F L +ATPPEL+P KPMRDWIK++GA I+LG+DPE AVRGADCV+TDTWVSMGDK+G Sbjct: 180 RFNFTLRIATPPELAPGKPMRDWIKSSGASIVLGTDPEEAVRGADCVLTDTWVSMGDKDG 239 Query: 236 EHRHNVLRPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHA 295 EHRHN+L+PYQVN +LMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHA Sbjct: 240 EHRHNLLKPYQVNTQLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHA 299 Query: 296 QKGILAWCFDAVA 308 QKGILAWCF AV Sbjct: 300 QKGILAWCFGAVG 312 >ref|YP_001236930.1| ornithine carbamoyltransferase [Bradyrhizobium sp. BTAi1] gb|ABQ33024.1| ornithine carbamoyltransferase [Bradyrhizobium sp. BTAi1] Length = 308 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 256/304 (84%), Positives = 284/304 (93%) Query: 1 MSKPVRHFLDINELPLGELRNMLSAGAAMKAKLKAHEKGRKPLEGKTLAMIFERPSTRTR 60 M+ RHFLD+ E+P+ ELRNML+ + MK LKA+E +KPLEGK LAMIF++PSTRTR Sbjct: 1 MANTPRHFLDLTEMPVEELRNMLALSSRMKKTLKANEPAKKPLEGKVLAMIFDKPSTRTR 60 Query: 61 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAAH 120 VSFDVGMRQLGGE+IMLTG EMQLGRGETIADTARVLSRYVDAIMIRIL+H+ALLELAAH Sbjct: 61 VSFDVGMRQLGGEAIMLTGTEMQLGRGETIADTARVLSRYVDAIMIRILSHEALLELAAH 120 Query: 121 ATVPVINGLTRRSHPCQVMADLMTYEENRGSIEGKTVAWTGDDNNVLASWAHAAERFKFQ 180 ATVPVINGLTRRSHPCQVMAD+MT+EE+RGSIEG+TVAWTGDDNNVLASWAHAAERFKF+ Sbjct: 121 ATVPVINGLTRRSHPCQVMADVMTFEEHRGSIEGRTVAWTGDDNNVLASWAHAAERFKFR 180 Query: 181 LNVATPPELSPKKPMRDWIKATGAPIMLGSDPEAAVRGADCVVTDTWVSMGDKEGEHRHN 240 LNVATPP+LSP KPM+D+I+AT A I LG DPEAAV GADCVVTDTWVSMGDK+GEHRHN Sbjct: 181 LNVATPPQLSPGKPMKDFIRATKADIHLGHDPEAAVTGADCVVTDTWVSMGDKDGEHRHN 240 Query: 241 VLRPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 +L+PYQVN+KLMSLAKP+A+FMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL Sbjct: 241 LLKPYQVNSKLMSLAKPEAIFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 Query: 301 AWCF 304 AWCF Sbjct: 301 AWCF 304 >ref|YP_001208590.1| ornithine carbamoyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL80375.1| ornithine carbamoyltransferase (OTCase) [Bradyrhizobium sp. ORS 278] Length = 308 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/304 (84%), Positives = 283/304 (93%) Query: 1 MSKPVRHFLDINELPLGELRNMLSAGAAMKAKLKAHEKGRKPLEGKTLAMIFERPSTRTR 60 M P RHFLD+ E+P+ ELRNML+ + MK LK++E RKPLEGK LAMIF++PSTRTR Sbjct: 1 MGNPPRHFLDLTEMPVEELRNMLALSSRMKQTLKSNEPSRKPLEGKVLAMIFDKPSTRTR 60 Query: 61 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAAH 120 VSFDVGMRQLGGE+IMLTG EMQLGRGETIADTARVLSRYVDAIMIRIL+H+ALLELAAH Sbjct: 61 VSFDVGMRQLGGEAIMLTGTEMQLGRGETIADTARVLSRYVDAIMIRILSHEALLELAAH 120 Query: 121 ATVPVINGLTRRSHPCQVMADLMTYEENRGSIEGKTVAWTGDDNNVLASWAHAAERFKFQ 180 ATVPVINGLTRRSHPCQVMAD+MT+EE+RGSIEG+TVAWTGDDNNVLASWAHAAERFKF+ Sbjct: 121 ATVPVINGLTRRSHPCQVMADVMTFEEHRGSIEGRTVAWTGDDNNVLASWAHAAERFKFR 180 Query: 181 LNVATPPELSPKKPMRDWIKATGAPIMLGSDPEAAVRGADCVVTDTWVSMGDKEGEHRHN 240 LNVATPP+LSP KPM+D+I+AT A I LG DPE AV+ ADCV+TDTWVSMGDK+GEHRHN Sbjct: 181 LNVATPPQLSPGKPMKDFIRATRADIHLGHDPEGAVKNADCVITDTWVSMGDKDGEHRHN 240 Query: 241 VLRPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 +L+PYQVNAKLMSLAKP+ALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL Sbjct: 241 LLKPYQVNAKLMSLAKPEALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 Query: 301 AWCF 304 AWCF Sbjct: 301 AWCF 304 >ref|YP_484406.1| ornithine carbamoyltransferase [Rhodopseudomonas palustris HaA2] gb|ABD05495.1| ornithine carbamoyltransferase [Rhodopseudomonas palustris HaA2] Length = 328 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/308 (83%), Positives = 281/308 (91%) Query: 1 MSKPVRHFLDINELPLGELRNMLSAGAAMKAKLKAHEKGRKPLEGKTLAMIFERPSTRTR 60 M+ RHFLD+ E+P ELRNML+AG AMKAK KA+ KPL GKTLAMIFE+PSTRTR Sbjct: 21 MTSAPRHFLDLTEVPTSELRNMLAAGVAMKAKRKANADADKPLAGKTLAMIFEKPSTRTR 80 Query: 61 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAAH 120 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSR+VD IMIRILNHD+LLELAA+ Sbjct: 81 VSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRFVDIIMIRILNHDSLLELAAN 140 Query: 121 ATVPVINGLTRRSHPCQVMADLMTYEENRGSIEGKTVAWTGDDNNVLASWAHAAERFKFQ 180 ATVPVINGLTR+SHPCQVMAD+MT+EE+RG I+G TVAWTGDDNNVLASWAHAA+RF F+ Sbjct: 141 ATVPVINGLTRKSHPCQVMADVMTFEEHRGPIKGATVAWTGDDNNVLASWAHAAQRFDFR 200 Query: 181 LNVATPPELSPKKPMRDWIKATGAPIMLGSDPEAAVRGADCVVTDTWVSMGDKEGEHRHN 240 LN+ATPP+L+P K MRDWIK +GA I LGSD EAAVRGADCVVTDTWVSMGDK+GEHRHN Sbjct: 201 LNIATPPQLAPNKAMRDWIKTSGAAITLGSDAEAAVRGADCVVTDTWVSMGDKDGEHRHN 260 Query: 241 VLRPYQVNAKLMSLAKPDALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 300 +L+P+QVNAKLMSLA DA+FMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL Sbjct: 261 LLKPFQVNAKLMSLAHKDAIFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKGIL 320 Query: 301 AWCFDAVA 308 AWC AVA Sbjct: 321 AWCLGAVA 328