BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0036.p         (236 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_534759.1| two component transcriptional regulator [Rhodop...   446   e-123
ref|YP_001238088.1| two component transcriptional regulator [Bra...   445   e-123
ref|YP_783785.1| two component transcriptional regulator [Rhodop...   443   e-123
ref|YP_001203793.1| two-component regulatory system response reg...   443   e-122
ref|ZP_07027215.1| two component transcriptional regulator, wing...   441   e-122

>ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/234 (97%), Positives = 231/234 (98%), Gaps = 1/234 (0%)

Query: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60
           MSARILVVEDEEALTTLLRYNLDAEGYDVETV RGDDADTRLKER+PDLVVLDWMLPGLS
Sbjct: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLS 60

Query: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
           GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180
           RRASPERLATVL YGDIELDR+KRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL
Sbjct: 121 RRASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180

Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRF-AKAE 233
           DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRF AKAE
Sbjct: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAAKAE 234


>ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/233 (96%), Positives = 231/233 (99%)

Query: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60
           M+ARILVVEDEEALTTLLRYNL+ EGY+VETVGRGD+ADTRLKERVPDLVVLDWMLPGLS
Sbjct: 1   MTARILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
           GIELCRRLR RPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL
Sbjct: 61  GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180
           RRASPERLATVL+YGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL
Sbjct: 121 RRASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180

Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKAE 233
           DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAK+E
Sbjct: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKSE 233


>ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/232 (96%), Positives = 229/232 (98%)

Query: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60
           MSARILVVEDEEAL+TLLRYNLDAEGYDVETV RGDDADTRLKER PDLVVLDWMLPGLS
Sbjct: 1   MSARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLS 60

Query: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
           GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180
           RRA+PERLATVLTYGD+ELDR+KRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL
Sbjct: 121 RRAAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180

Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKA 232
           D VWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKA
Sbjct: 181 DGVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKA 232


>ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS 278]
 emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS 278]
          Length = 235

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/233 (96%), Positives = 230/233 (98%)

Query: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60
           M ARILVVEDEEALTTLLRYNL+AEGY+VETV RGD+ADTRLKER+PDLVVLDWMLPGLS
Sbjct: 1   MGARILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLS 60

Query: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
           GIELCRRLRAR ETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL
Sbjct: 61  GIELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180
           RRASPERLATVL+YGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL
Sbjct: 121 RRASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180

Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKAE 233
           DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAK+E
Sbjct: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKSE 233


>ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/233 (96%), Positives = 227/233 (97%)

Query: 1   MSARILVVEDEEALTTLLRYNLDAEGYDVETVGRGDDADTRLKERVPDLVVLDWMLPGLS 60
           M+ARILVVEDEEAL+TLLRYNLDAEGYDVETV RGDDADTRLKERVPDLVVLDWMLPGLS
Sbjct: 1   MNARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLS 60

Query: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
           GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL
Sbjct: 61  GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120

Query: 121 RRASPERLATVLTYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLL 180
           RRASPERLA VL YGDIELDREKRRVARSGRPIDLGPTEYRLLEFFL+HPGRVFSREQLL
Sbjct: 121 RRASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLL 180

Query: 181 DSVWGRDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALDDRFAKAE 233
           D VWGRDIYIDERTVDVHIGRLRKLLNPG EQDPIRTVRGAGYALDDRFAK E
Sbjct: 181 DGVWGRDIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALDDRFAKVE 233