BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0028.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767729.1| hypothetical protein blr1089 [Bradyrhizobium ja... 619 e-175 ref|YP_001236926.1| hypothetical protein BBta_0756 [Bradyrhizobi... 598 e-169 ref|YP_001208594.1| hypothetical protein BRADO6783 [Bradyrhizobi... 593 e-167 ref|YP_534766.1| hypothetical protein RPC_4925 [Rhodopseudomonas... 544 e-152 ref|YP_575981.1| hypothetical protein Nham_0633 [Nitrobacter ham... 530 e-148 >ref|NP_767729.1| hypothetical protein blr1089 [Bradyrhizobium japonicum USDA 110] dbj|BAC46354.1| blr1089 [Bradyrhizobium japonicum USDA 110] Length = 351 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 308/348 (88%), Positives = 323/348 (92%) Query: 1 MLEAIRRAMAFLRQKQILHRLGVVISIAVIGIACYVLYHMLRGIDTNEVLEAIKSTEPRQ 60 MLEAIRRAM FLRQKQ+LH+LGVVIS+AVIGIACYVLYHMLRGID NEV+EAIKSTEP Q Sbjct: 1 MLEAIRRAMTFLRQKQVLHKLGVVISVAVIGIACYVLYHMLRGIDFNEVIEAIKSTEPSQ 60 Query: 61 IALAGLFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 IA+A LFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV Sbjct: 61 IAMAALFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 Query: 121 RYRIYSAWGLNAIDVAKICFLAGLTFWLGNAAVLGLGIAYHPEAAANIDQLPPWLNRALA 180 RYRIYSA+GLNAIDVAKICFLAGLTFWLGNAAVLGLGI+YHPEAAA+IDQLPPWLNR LA Sbjct: 121 RYRIYSAYGLNAIDVAKICFLAGLTFWLGNAAVLGLGISYHPEAAASIDQLPPWLNRTLA 180 Query: 181 FAIITALVAYVVWVWTQPRVVGRGPWTVTLPGGPLTLLQIAIGILDLGFCALAMYVLVPD 240 II LV YVVWVWTQPRVVGRGPWTV LPGGPLTLLQIAIGI+DLGFCALAMYVLVPD Sbjct: 181 LMIIVGLVGYVVWVWTQPRVVGRGPWTVVLPGGPLTLLQIAIGIIDLGFCALAMYVLVPD 240 Query: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREDLLGGMLLFRLLYY 300 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDRE+LLGGMLLFR+LYY Sbjct: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREELLGGMLLFRVLYY 300 Query: 301 IAPFVISVILLTFREVIVGARLKRLPQADSGPRAEPHHEAVLVRKRGD 348 ++PFVISVILLTFREVI+GAR KRL QA P EA VR+R D Sbjct: 301 LSPFVISVILLTFREVIIGARSKRLQQAALKLDPGPAREAAYVRERSD 348 >ref|YP_001236926.1| hypothetical protein BBta_0756 [Bradyrhizobium sp. BTAi1] gb|ABQ33020.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 351 Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/350 (85%), Positives = 316/350 (90%) Query: 1 MLEAIRRAMAFLRQKQILHRLGVVISIAVIGIACYVLYHMLRGIDTNEVLEAIKSTEPRQ 60 MLEAIR A FLR+KQ+LH+LGV+ISIAVI IACYVLYHMLRGIDT EVLEAIKSTEP Q Sbjct: 1 MLEAIRGAATFLREKQVLHKLGVLISIAVIAIACYVLYHMLRGIDTYEVLEAIKSTEPHQ 60 Query: 61 IALAGLFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 IALA LFVAAGYFTLTFYDLFAVR IGH HVPYR+NALAAFTSYSIGHNVGASVFTGGAV Sbjct: 61 IALAALFVAAGYFTLTFYDLFAVRTIGHDHVPYRVNALAAFTSYSIGHNVGASVFTGGAV 120 Query: 121 RYRIYSAWGLNAIDVAKICFLAGLTFWLGNAAVLGLGIAYHPEAAANIDQLPPWLNRALA 180 RYRIYSA GLNAIDVAKICFLAGLTFWLGNAAVLGLGI+YHPEAAA+IDQLPPW+NR A Sbjct: 121 RYRIYSAHGLNAIDVAKICFLAGLTFWLGNAAVLGLGISYHPEAAASIDQLPPWVNRLAA 180 Query: 181 FAIITALVAYVVWVWTQPRVVGRGPWTVTLPGGPLTLLQIAIGILDLGFCALAMYVLVPD 240 AI+ L+ YV WVWT+PRVVGRGPWTV LPGGPLTLLQIAIGI+DLGFCALAMYVLVPD Sbjct: 181 IAILVGLMGYVAWVWTKPRVVGRGPWTVVLPGGPLTLLQIAIGIVDLGFCALAMYVLVPD 240 Query: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREDLLGGMLLFRLLYY 300 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDRE+LL GMLLFR+LYY Sbjct: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREELLAGMLLFRMLYY 300 Query: 301 IAPFVISVILLTFREVIVGARLKRLPQADSGPRAEPHHEAVLVRKRGDSG 350 +APF+ISVILLTFREVI+ AR KRL QA P EA VRKR DSG Sbjct: 301 LAPFLISVILLTFREVIISARSKRLRQAALSLDPSPPPEAAYVRKRSDSG 350 >ref|YP_001208594.1| hypothetical protein BRADO6783 [Bradyrhizobium sp. ORS 278] emb|CAL80379.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 351 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 296/350 (84%), Positives = 315/350 (90%) Query: 1 MLEAIRRAMAFLRQKQILHRLGVVISIAVIGIACYVLYHMLRGIDTNEVLEAIKSTEPRQ 60 MLEAIRRA FLR+KQ+LH+LGV+IS+AVI +ACYVLYHMLRGIDT EVLEAIKSTEP Q Sbjct: 1 MLEAIRRAATFLREKQVLHKLGVLISVAVIAVACYVLYHMLRGIDTYEVLEAIKSTEPHQ 60 Query: 61 IALAGLFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 IALA LFVAAGYFTLTFYDLFAVR IGH HVPYR+NALAAFTSYSIGHNVGASVFTGGAV Sbjct: 61 IALAALFVAAGYFTLTFYDLFAVRTIGHDHVPYRVNALAAFTSYSIGHNVGASVFTGGAV 120 Query: 121 RYRIYSAWGLNAIDVAKICFLAGLTFWLGNAAVLGLGIAYHPEAAANIDQLPPWLNRALA 180 RYRIYSA GLNAIDVAKICFLAGLTFWLGNAAVLGLGI+YHPEAAA+IDQLPP +NR A Sbjct: 121 RYRIYSAHGLNAIDVAKICFLAGLTFWLGNAAVLGLGISYHPEAAASIDQLPPSVNRMAA 180 Query: 181 FAIITALVAYVVWVWTQPRVVGRGPWTVTLPGGPLTLLQIAIGILDLGFCALAMYVLVPD 240 AI+ L+ YV WVWT+PRVVGRGPWTV LPGGPLTLLQIAIGI+DLGFCALAMYVLVPD Sbjct: 181 IAILIGLMGYVAWVWTKPRVVGRGPWTVVLPGGPLTLLQIAIGIVDLGFCALAMYVLVPD 240 Query: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREDLLGGMLLFRLLYY 300 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDRE+LL GMLLFR+LYY Sbjct: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREELLAGMLLFRMLYY 300 Query: 301 IAPFVISVILLTFREVIVGARLKRLPQADSGPRAEPHHEAVLVRKRGDSG 350 +APF+ISVILLTFREVI+ AR KRL QA P EA RKR DSG Sbjct: 301 LAPFLISVILLTFREVIISARSKRLRQAALSLDPGPPPEAAFARKRSDSG 350 >ref|YP_534766.1| hypothetical protein RPC_4925 [Rhodopseudomonas palustris BisB18] gb|ABD90447.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 344 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/339 (78%), Positives = 301/339 (88%) Query: 1 MLEAIRRAMAFLRQKQILHRLGVVISIAVIGIACYVLYHMLRGIDTNEVLEAIKSTEPRQ 60 MLEAIRRA++FLRQKQILH+LG VIS+ VI IACYVL+HMLRGID ++V++A+K TEP Sbjct: 1 MLEAIRRAVSFLRQKQILHKLGFVISVLVIAIACYVLFHMLRGIDVDDVIDAVKQTEPSS 60 Query: 61 IALAGLFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 +AL+ LFVAAGYFTLTFYDLFAVRAIG + VPYR NALAAF SYSIGHNVGASVFTGGAV Sbjct: 61 VALSALFVAAGYFTLTFYDLFAVRAIGRSDVPYRTNALAAFASYSIGHNVGASVFTGGAV 120 Query: 121 RYRIYSAWGLNAIDVAKICFLAGLTFWLGNAAVLGLGIAYHPEAAANIDQLPPWLNRALA 180 RYRIYSAWGL+ +D+AKICFLAGLTFWLGNAAVLGLGIAYHPEAA+ IDQLPPW+NRA A Sbjct: 121 RYRIYSAWGLDGVDIAKICFLAGLTFWLGNAAVLGLGIAYHPEAASAIDQLPPWVNRAGA 180 Query: 181 FAIITALVAYVVWVWTQPRVVGRGPWTVTLPGGPLTLLQIAIGILDLGFCALAMYVLVPD 240 II L++YV WV +PR VGRG W VTLPGG LTL+QIAIGI+DLGFCALAMYVL+PD Sbjct: 181 IVIIIGLLSYVAWVSIRPRCVGRGHWKVTLPGGALTLVQIAIGIIDLGFCALAMYVLLPD 240 Query: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREDLLGGMLLFRLLYY 300 EPN+GFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMD+E+LL GMLLFR+LYY Sbjct: 241 EPNVGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDKEELLAGMLLFRMLYY 300 Query: 301 IAPFVISVILLTFREVIVGARLKRLPQADSGPRAEPHHE 339 +APF+ISVILL RE+++GAR KRL + + A+P E Sbjct: 301 VAPFIISVILLAIRELVLGARSKRLRKIAAALDAKPVRE 339 >ref|YP_575981.1| hypothetical protein Nham_0633 [Nitrobacter hamburgensis X14] gb|ABE61521.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 351 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/350 (75%), Positives = 303/350 (86%) Query: 1 MLEAIRRAMAFLRQKQILHRLGVVISIAVIGIACYVLYHMLRGIDTNEVLEAIKSTEPRQ 60 ML +IRRA++ LR+KQILH+LGV IS+ VI +A YVL+H+LR D +EV+EA++ TEPR Sbjct: 1 MLGSIRRAISVLRRKQILHKLGVAISVTVIAVAFYVLFHILRDTDVDEVIEAVRQTEPRL 60 Query: 61 IALAGLFVAAGYFTLTFYDLFAVRAIGHAHVPYRINALAAFTSYSIGHNVGASVFTGGAV 120 IAL+GLFVAAGYFTLTFYDLFAVRAIG H+PYR+ A AAFTSYS+GHNVGASVFTGGAV Sbjct: 61 IALSGLFVAAGYFTLTFYDLFAVRAIGVTHIPYRVAAFAAFTSYSVGHNVGASVFTGGAV 120 Query: 121 RYRIYSAWGLNAIDVAKICFLAGLTFWLGNAAVLGLGIAYHPEAAANIDQLPPWLNRALA 180 RYR+YS+ GL+AIDVAK+CFLAGLTFWLGNAAVLGLGIAYHPEAA +IDQLP W NR +A Sbjct: 121 RYRVYSSCGLSAIDVAKVCFLAGLTFWLGNAAVLGLGIAYHPEAATSIDQLPAWCNRLIA 180 Query: 181 FAIITALVAYVVWVWTQPRVVGRGPWTVTLPGGPLTLLQIAIGILDLGFCALAMYVLVPD 240 AII L+ YV+WV +PR VG GPWTV LPGGPLTLLQI IGI+DLGFCALAMYVLVPD Sbjct: 181 IAIILGLIGYVIWVGIRPRRVGSGPWTVVLPGGPLTLLQILIGIVDLGFCALAMYVLVPD 240 Query: 241 EPNLGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDREDLLGGMLLFRLLYY 300 +PN+GFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMD++DLL GMLLFRLLYY Sbjct: 241 QPNVGFVVVAVIFVSATLLGFASHSPGGLGVFDAAMLVGLWQMDKKDLLAGMLLFRLLYY 300 Query: 301 IAPFVISVILLTFREVIVGARLKRLPQADSGPRAEPHHEAVLVRKRGDSG 350 + PFVIS+ILLT RE+I+ AR+KR+ SG A P + +R+ GDSG Sbjct: 301 VVPFVISIILLTLREIIISARMKRVGDVRSGSSAGPTGKLSCLREHGDSG 350