BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0023.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium ja...   160   5e-38
ref|YP_575979.1| OmpA/MotB [Nitrobacter hamburgensis X14] >gi|91...   154   5e-36
ref|YP_783794.1| OmpA/MotB domain-containing protein [Rhodopseud...   152   1e-35
ref|ZP_01044649.1| OmpA/MotB [Nitrobacter sp. Nb-311A] >gi|85699...   151   2e-35
ref|YP_534768.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] >...   151   4e-35

>ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46349.1| blr1084 [Bradyrhizobium japonicum USDA 110]
          Length = 464

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 86/93 (92%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           PDSAG+LD LIETALRCP   I++AGHTD+DGE+A NQALSE+RAQAV+DYLV+AGLPAS
Sbjct: 372 PDSAGILDHLIETALRCPTTNIDVAGHTDADGEDAFNQALSEKRAQAVIDYLVKAGLPAS 431

Query: 62  RFTPIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           RFT IGYGS QP+AGN+++DGKAQNRRIEF+V+
Sbjct: 432 RFTAIGYGSTQPVAGNDTDDGKAQNRRIEFLVR 464


>ref|YP_575979.1| OmpA/MotB [Nitrobacter hamburgensis X14]
 gb|ABE61519.1| OmpA/MotB [Nitrobacter hamburgensis X14]
          Length = 463

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 82/93 (88%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           PDS GLLDRL ETALRCP ATIEIAGHTDSDG+ + NQ LSERRAQAVVDYLV+AG+PA 
Sbjct: 370 PDSIGLLDRLTETALRCPTATIEIAGHTDSDGDASFNQTLSERRAQAVVDYLVKAGMPAD 429

Query: 62  RFTPIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           RF P+GYGS QP+A N++++GKA+NRRI+F V+
Sbjct: 430 RFKPMGYGSVQPIAANDTDEGKAKNRRIDFTVR 462


>ref|YP_783794.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ08814.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53]
          Length = 465

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 83/92 (90%)

Query: 3   DSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPASR 62
           DS GLLDRLIETA+RC +A IEIAGHTD DGE AAN+ALSERRAQAVVDY+V+AGLPA R
Sbjct: 373 DSLGLLDRLIETAMRCSSAVIEIAGHTDGDGEAAANKALSERRAQAVVDYMVKAGLPADR 432

Query: 63  FTPIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           F P+G+GSAQP+A N++++GKAQNRRIEF V+
Sbjct: 433 FHPVGFGSAQPVASNDNDEGKAQNRRIEFTVR 464


>ref|ZP_01044649.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
 gb|EAQ37430.1| OmpA/MotB [Nitrobacter sp. Nb-311A]
          Length = 463

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 84/93 (90%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           PDS GLLD+L ETALRCP ATIEI GHTD DG+ + NQALSERRAQAVVD++V+AGLPA+
Sbjct: 370 PDSIGLLDQLTETALRCPTATIEIVGHTDGDGDASFNQALSERRAQAVVDFMVKAGLPAN 429

Query: 62  RFTPIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           RF PIGYGSAQP+A N++++GKA+NRRI+F+V+
Sbjct: 430 RFRPIGYGSAQPIATNDTDEGKAKNRRIDFIVR 462


>ref|YP_534768.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
 gb|ABD90449.1| OmpA/MotB [Rhodopseudomonas palustris BisB18]
          Length = 464

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 81/93 (87%)

Query: 2   PDSAGLLDRLIETALRCPNATIEIAGHTDSDGEEAANQALSERRAQAVVDYLVRAGLPAS 61
           PDS GLLDRLIETALRCP ATIEIAGHTD DG+ A NQ LSE+RAQAV +Y+VRAGLPA 
Sbjct: 372 PDSVGLLDRLIETALRCPTATIEIAGHTDGDGDGAFNQTLSEKRAQAVAEYMVRAGLPAE 431

Query: 62  RFTPIGYGSAQPLAGNESEDGKAQNRRIEFVVK 94
           RF P+GYGS  P+A N++++GKAQNRRIEF+V+
Sbjct: 432 RFRPVGYGSTTPVAPNDNDEGKAQNRRIEFMVR 464