BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0022.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium ja... 445 e-123 ref|YP_568023.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] >g... 445 e-123 ref|YP_484394.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] >gi... 428 e-118 ref|YP_001236924.1| OmpA domain-containing protein [Bradyrhizobi... 424 e-116 ref|NP_950118.1| OmpA/MotB domain-containing protein [Rhodopseud... 419 e-115 >ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium japonicum USDA 110] dbj|BAC46349.1| blr1084 [Bradyrhizobium japonicum USDA 110] Length = 464 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/296 (76%), Positives = 258/296 (87%), Gaps = 1/296 (0%) Query: 1 VFWGIAAWTSTATVEADLAARSNAALKDTVLDKRRISVDGRDVTFAANAFSEDGRLSAVA 60 V WG AAW +T VEADL+ARS+AALK+TVLDK RI+VDGRDV+ AA+AFSE+GR AV Sbjct: 20 VMWGFAAWNNTLPVEADLSARSSAALKETVLDKTRIAVDGRDVSLAADAFSEEGRRDAVM 79 Query: 61 SVEAVPGVRLVNDETRLVPEAKPFVWSAERDVVRVTLGGNAPLPSSKGKLTEAAKASLGG 120 +VE VPGVRLV+D TRLV EAKPFVW+AERDVVRVTL G+APLPS K +LTEAA+ +GG Sbjct: 80 AVEIVPGVRLVDDRTRLVAEAKPFVWNAERDVVRVTLSGSAPLPSIKARLTEAARKEVGG 139 Query: 121 VEVVDQMVLARGAPSRFDAAALLLLDQIGKLKEGKITLTDNKVALVGMARELGGREAVAA 180 VEV DQM LARGAP RF+AAA+LLLDQIGKLK+GKIT++D K+ L GMAR+LGGREA+AA Sbjct: 140 VEVADQMGLARGAPPRFEAAAMLLLDQIGKLKDGKITISDTKINLSGMARDLGGREAIAA 199 Query: 181 ALKNLPEGYSIAANDIKAPPYVFQAYKDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSE 240 ALKNLPEG+ IAANDIKAPPY+FQAYKDPVA T+TLTGYVPDNNVHAA+ +A RKFF+E Sbjct: 200 ALKNLPEGFLIAANDIKAPPYIFQAYKDPVAATVTLTGYVPDNNVHAAIATSASRKFFNE 259 Query: 241 KVVDNLKASIGAPSGFAAAVVPALGALSRLSTGTLVVSDREVKLSGXARIFRRAGS 296 KVVDNLKAS+GAP F AVV ALGALSRLSTGTLVVSDREVKLSG A ++ AG+ Sbjct: 260 KVVDNLKASLGAPGAFNPAVVAALGALSRLSTGTLVVSDREVKLSGDA-LYEGAGN 314 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 31 LDKRRISVDGRDVTFAANAFSEDGRLSAVASVEAVPGVRLV--NDETRLVPEAKPFVWSA 88 L +I++ + + A GR + A+++ +P L+ ND +A P+++ A Sbjct: 170 LKDGKITISDTKINLSGMARDLGGREAIAAALKNLPEGFLIAAND-----IKAPPYIFQA 224 Query: 89 ERDVV--RVTLGGNAPLPSSKGKLTEAAKASLGGVEVVDQMVLARGAPSRFDAAALLLLD 146 +D V VTL G P + + +A +VVD + + GAP F+ A + L Sbjct: 225 YKDPVAATVTLTGYVPDNNVHAAIATSASRKFFNEKVVDNLKASLGAPGAFNPAVVAALG 284 Query: 147 QIGKLKEGKITLTDNKVALVGMARELGGREAVAAAL-KNLPEGYS 190 + +L G + ++D +V L G A G + A L K+ P+ + Sbjct: 285 ALSRLSTGTLVVSDREVKLSGDALYEGAGNDIRAGLGKDFPKNWQ 329 >ref|YP_568023.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gb|ABE38122.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 464 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/287 (77%), Positives = 251/287 (87%) Query: 2 FWGIAAWTSTATVEADLAARSNAALKDTVLDKRRISVDGRDVTFAANAFSEDGRLSAVAS 61 W IAAWT+T VEAD+A RS AALK TVLDK R++ GRD+ F+A+AFSE+GR SAVA+ Sbjct: 21 LWAIAAWTTTPAVEADVAERSAAALKSTVLDKTRLTAAGRDIAFSADAFSEEGRRSAVAA 80 Query: 62 VEAVPGVRLVNDETRLVPEAKPFVWSAERDVVRVTLGGNAPLPSSKGKLTEAAKASLGGV 121 VE+VPGVRLV D+TRLVP A PFVWS ERDVVRVTLGG+APLP+SK +L EAA+ + GV Sbjct: 81 VESVPGVRLVVDQTRLVPLASPFVWSVERDVVRVTLGGSAPLPASKARLAEAARNEVSGV 140 Query: 122 EVVDQMVLARGAPSRFDAAALLLLDQIGKLKEGKITLTDNKVALVGMARELGGREAVAAA 181 EVVDQ+ LARGAPSRFDA ALLL+DQIGKLKEGKITL+D K++L GMAR+LGGREA+AAA Sbjct: 141 EVVDQISLARGAPSRFDATALLLVDQIGKLKEGKITLSDTKISLSGMARDLGGREAIAAA 200 Query: 182 LKNLPEGYSIAANDIKAPPYVFQAYKDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSEK 241 L+NLPEGYS+A NDIKAPPYVFQA KDPVA TLTLTGYVPDN VHAAL AG+KFFSEK Sbjct: 201 LRNLPEGYSVAENDIKAPPYVFQANKDPVASTLTLTGYVPDNAVHAALADTAGQKFFSEK 260 Query: 242 VVDNLKASIGAPSGFAAAVVPALGALSRLSTGTLVVSDREVKLSGXA 288 VVDNLKASIGAP GFA AV PALGALSRLSTGTL+VSDREV+LSG A Sbjct: 261 VVDNLKASIGAPQGFANAVKPALGALSRLSTGTLIVSDREVRLSGDA 307 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 151 LKEGKITLTDNKVALVGMARELGGREAVAAALKNLPEGYSIAANDIK----APPYVFQAY 206 L + ++T +A A GR + AA++++P G + + + A P+V+ Sbjct: 50 LDKTRLTAAGRDIAFSADAFSEEGRRSAVAAVESVP-GVRLVVDQTRLVPLASPFVWSVE 108 Query: 207 KDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSEKVVDNLKASIGAPSGFAAAVVPALGA 266 +D V VTL G P A L AA + +VVD + + GAPS F A + + Sbjct: 109 RDVVRVTLG--GSAPLPASKARLAEAARNEVSGVEVVDQISLARGAPSRFDATALLLVDQ 166 Query: 267 LSRLSTGTLVVSDREVKLSGXAR 289 + +L G + +SD ++ LSG AR Sbjct: 167 IGKLKEGKITLSDTKISLSGMAR 189 >ref|YP_484394.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gb|ABD05483.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 464 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/308 (75%), Positives = 266/308 (86%), Gaps = 2/308 (0%) Query: 2 FWGIAAWTSTATVEADLAARSNAALKDTVLDKRRISVDGRDVTFAANAFSEDGRLSAVAS 61 W IAAWT+T VEAD+AARS AALK TVLDK R++ GRD+ F+A+AFSE+GR SAVA+ Sbjct: 21 LWSIAAWTTTPDVEADVAARSVAALKSTVLDKARLTPVGRDIVFSADAFSEEGRRSAVAA 80 Query: 62 VEAVPGVRLVNDETRLVPEAKPFVWSAERDVVRVTLGGNAPLPSSKGKLTEAAKASLGGV 121 VEAVPGVRLV D+TRLVP+A PFVWS ERDVVRVTL G+APLP+S+ +L +AA+A L GV Sbjct: 81 VEAVPGVRLVVDQTRLVPQATPFVWSIERDVVRVTLAGSAPLPASRARLADAARAELAGV 140 Query: 122 EVVDQMVLARGAPSRFDAAALLLLDQIGKLKEGKITLTDNKVALVGMARELGGREAVAAA 181 EV D+M LARGAP+RFDAAALLL+DQIGKLKEGKITL+D KV+L GMAR+LGGREA+ AA Sbjct: 141 EVADRMTLARGAPTRFDAAALLLVDQIGKLKEGKITLSDTKVSLAGMARDLGGREAIGAA 200 Query: 182 LKNLPEGYSIAANDIKAPPYVFQAYKDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSEK 241 L+NLPEGY++AANDIKAPPYVFQA KDPVA TLTLTGYVPDNNVHAAL AAAGRKFFSEK Sbjct: 201 LRNLPEGYAVAANDIKAPPYVFQANKDPVASTLTLTGYVPDNNVHAALAAAAGRKFFSEK 260 Query: 242 VVDNLKASIGAPSGFAAAVVPALGALSRLSTGTLVVSDREVKLSGXARIFRRAGSTRPRS 301 VVD LKASIGAP GFA AV PALGALSRLSTGTLVVSDREV+LSG A +F A ++ RS Sbjct: 261 VVDQLKASIGAPQGFAGAVAPALGALSRLSTGTLVVSDREVRLSGDA-LF-EAAVSQIRS 318 Query: 302 RSSRRRPR 309 ++ P+ Sbjct: 319 ELNKDMPQ 326 >ref|YP_001236924.1| OmpA domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ33018.1| putative outer membrane protein with ompA domain [Bradyrhizobium sp. BTAi1] Length = 464 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/298 (70%), Positives = 248/298 (83%) Query: 1 VFWGIAAWTSTATVEADLAARSNAALKDTVLDKRRISVDGRDVTFAANAFSEDGRLSAVA 60 V WG AAWTST +E DLA RS+AALK +VLDK I+VDGRDV ANAFSE GR AVA Sbjct: 20 VLWGFAAWTSTVPLENDLAGRSSAALKGSVLDKTSITVDGRDVALRANAFSEAGRRDAVA 79 Query: 61 SVEAVPGVRLVNDETRLVPEAKPFVWSAERDVVRVTLGGNAPLPSSKGKLTEAAKASLGG 120 +V+AVPGVRLVNDETRLVPEAKPFVWS ERDVVRVTLGGNAPLP+ KGKL EA +++L G Sbjct: 80 AVDAVPGVRLVNDETRLVPEAKPFVWSVERDVVRVTLGGNAPLPALKGKLVEATRSALQG 139 Query: 121 VEVVDQMVLARGAPSRFDAAALLLLDQIGKLKEGKITLTDNKVALVGMARELGGREAVAA 180 EV DQM LARGAP F+ AALLL+ QIG+LK+GK T++D +V+L GMARELGGREA+AA Sbjct: 140 GEVADQMSLARGAPPHFEDAALLLIGQIGRLKDGKFTISDGEVSLTGMARELGGREAIAA 199 Query: 181 ALKNLPEGYSIAANDIKAPPYVFQAYKDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSE 240 AL LP+G+ +A+N++KAPPY+FQAYKDPVAVT+TL+G VPD N+HA +V ++ RKFFSE Sbjct: 200 ALAKLPDGFKVASNEVKAPPYIFQAYKDPVAVTVTLSGNVPDENIHAVVVGSSSRKFFSE 259 Query: 241 KVVDNLKASIGAPSGFAAAVVPALGALSRLSTGTLVVSDREVKLSGXARIFRRAGSTR 298 KVVDNLK S+GAP+ F AVVPALGALSRLSTGTLVVSDR++K+SG A AG R Sbjct: 260 KVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRDIKISGDALYDAAAGQIR 317 >ref|NP_950118.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris CGA009] ref|YP_001994232.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris TIE-1] emb|CAE30224.1| OmpA/MotB domain [Rhodopseudomonas palustris CGA009] gb|ACF03757.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 464 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/288 (70%), Positives = 243/288 (84%) Query: 1 VFWGIAAWTSTATVEADLAARSNAALKDTVLDKRRISVDGRDVTFAANAFSEDGRLSAVA 60 + W IAAWT+ VEADL AR+ A LKDTVLDK +I+ GRD+T A AFSE+GR +AV+ Sbjct: 20 ILWAIAAWTTMPAVEADLGARATAVLKDTVLDKTKITAAGRDITLTAEAFSEEGRRAAVS 79 Query: 61 SVEAVPGVRLVNDETRLVPEAKPFVWSAERDVVRVTLGGNAPLPSSKGKLTEAAKASLGG 120 +VEAVPG+RLVND T+LVPEA P+VWS ERDVVRVTL G+APLP+S+ +L + A+A++ G Sbjct: 80 AVEAVPGLRLVNDRTKLVPEASPYVWSIERDVVRVTLTGSAPLPASRTRLADGARAAVNG 139 Query: 121 VEVVDQMVLARGAPSRFDAAALLLLDQIGKLKEGKITLTDNKVALVGMARELGGREAVAA 180 EVVD+M LARGAP RFDAAA+LL+DQI KLK+GKITLT +VAL GMA++LGGRE++AA Sbjct: 140 TEVVDRMALARGAPQRFDAAAMLLIDQIAKLKQGKITLTGTQVALKGMAKDLGGRESIAA 199 Query: 181 ALKNLPEGYSIAANDIKAPPYVFQAYKDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSE 240 AL+ LP+GY++ NDI+APPYVF+AYKDPVA +TL GYVPDNNVHAAL AA GRKFF+E Sbjct: 200 ALRTLPDGYTVGENDIEAPPYVFRAYKDPVAGQVTLDGYVPDNNVHAALAAATGRKFFNE 259 Query: 241 KVVDNLKASIGAPSGFAAAVVPALGALSRLSTGTLVVSDREVKLSGXA 288 KVVDNLKAS+GAP GF A PALGALSRLSTGTLV+SDREV LSG A Sbjct: 260 KVVDNLKASVGAPKGFLEAATPALGALSRLSTGTLVLSDREVHLSGDA 307 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 151 LKEGKITLTDNKVALVGMARELGGREAVAAALKNLPEGYSIAANDIK----APPYVFQAY 206 L + KIT + L A GR A +A++ +P G + + K A PYV+ Sbjct: 50 LDKTKITAAGRDITLTAEAFSEEGRRAAVSAVEAVP-GLRLVNDRTKLVPEASPYVWSIE 108 Query: 207 KDPVAVTLTLTGYVPDNNVHAALVAAAGRKFFSEKVVDNLKASIGAPSGFAAAVVPALGA 266 +D V VTLT + +P + A A A +VVD + + GAP F AA + + Sbjct: 109 RDVVRVTLTGSAPLPASRTRLADGARAAVN--GTEVVDRMALARGAPQRFDAAAMLLIDQ 166 Query: 267 LSRLSTGTLVVSDREVKLSGXAR 289 +++L G + ++ +V L G A+ Sbjct: 167 IAKLKQGKITLTGTQVALKGMAK 189