BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0020.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767722.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhizo... 496 e-138 ref|ZP_08628179.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhi... 464 e-129 ref|YP_530140.1| short-chain dehydrogenase/reductase SDR [Rhodop... 442 e-122 ref|YP_779413.1| short-chain dehydrogenase/reductase SDR [Rhodop... 428 e-118 ref|YP_004111249.1| short-chain dehydrogenase/reductase SDR [Rho... 422 e-116 >ref|NP_767722.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC46347.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 266 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 241/266 (90%), Positives = 257/266 (96%) Query: 5 MFKDLFSLKGRVALVTGGSRGIGKMIAAGFLAQGAARVYITARKAGPCEATAQELSAAYD 64 MF DLFSLKGR+ALVTGGSRGIGKMIAAGFLAQGAA+VYITARKAGPCEATA+ELSA YD Sbjct: 1 MFNDLFSLKGRIALVTGGSRGIGKMIAAGFLAQGAAKVYITARKAGPCEATAKELSALYD 60 Query: 65 GECIALPIDISTVEGCEKLAGEIIKREPKLDILVNNAGAAWGADFDEFPESGWDKVMDLN 124 GECIALPIDISTVEGC+KLAGEIIK EPKLDILVNNAGAAWGA+FDEFPESGWDKVMDLN Sbjct: 61 GECIALPIDISTVEGCDKLAGEIIKLEPKLDILVNNAGAAWGAEFDEFPESGWDKVMDLN 120 Query: 125 VKSIFFLTKALAKPLRAAATHDKPGKVINIASIDGIFVNPMETYSYAASKAAVIHLTRRM 184 VKS+FFLTKALAKPLRAAA+ ++P KVINIAS+DGIFVNP ETYSYAASKAAVIHLTRRM Sbjct: 121 VKSLFFLTKALAKPLRAAASAERPAKVINIASVDGIFVNPSETYSYAASKAAVIHLTRRM 180 Query: 185 ATRLIKDNINVTAIAPGAFKSDMNRAARDHADEVAKRVPAKRVGSDEDMAGTAIYLASRA 244 AT+LIKDNINVTAIAPGAFKSDMNRAARDHAD+VAKR+PA+R+G+DEDMAG AIYLASRA Sbjct: 181 ATKLIKDNINVTAIAPGAFKSDMNRAARDHADDVAKRIPARRIGTDEDMAGVAIYLASRA 240 Query: 245 GDYVVGTTIAVDGGVVYATAGLEIAG 270 GDYVVG TIAVDGGVVYA AGLEIAG Sbjct: 241 GDYVVGNTIAVDGGVVYANAGLEIAG 266 >ref|ZP_08628179.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09088.1| 2-deoxy-D-gluconate 3-dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] Length = 267 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/266 (84%), Positives = 244/266 (91%) Query: 5 MFKDLFSLKGRVALVTGGSRGIGKMIAAGFLAQGAARVYITARKAGPCEATAQELSAAYD 64 MFKD+FSLKGRVALVTGGSRGIGKMIA GFLA GA++VYITARKAGPCE TA+EL+AAYD Sbjct: 1 MFKDMFSLKGRVALVTGGSRGIGKMIAGGFLAYGASKVYITARKAGPCEETAKELTAAYD 60 Query: 65 GECIALPIDISTVEGCEKLAGEIIKREPKLDILVNNAGAAWGADFDEFPESGWDKVMDLN 124 GECIALPID+STVEGC KLA EIIKREPKLDILVNNAGAAWGA+FDEFPE+GWDKVM+LN Sbjct: 61 GECIALPIDMSTVEGCNKLAEEIIKREPKLDILVNNAGAAWGANFDEFPEAGWDKVMNLN 120 Query: 125 VKSIFFLTKALAKPLRAAATHDKPGKVINIASIDGIFVNPMETYSYAASKAAVIHLTRRM 184 VKS+FFLTKALAKPLRAAAT DKPGKVINIASIDG+ VNP+ETYSY ASKAAVIHLTRRM Sbjct: 121 VKSLFFLTKALAKPLRAAATKDKPGKVINIASIDGLSVNPLETYSYQASKAAVIHLTRRM 180 Query: 185 ATRLIKDNINVTAIAPGAFKSDMNRAARDHADEVAKRVPAKRVGSDEDMAGTAIYLASRA 244 A +LI DNINVTAI PGAF+SDMN AARDH D VAKR+P+KR+G EDMAG AIYLASRA Sbjct: 181 AAKLIHDNINVTAICPGAFESDMNTAARDHGDSVAKRIPSKRIGRPEDMAGIAIYLASRA 240 Query: 245 GDYVVGTTIAVDGGVVYATAGLEIAG 270 GDYVVG +IAVDGG+VYA L +AG Sbjct: 241 GDYVVGNSIAVDGGIVYANLSLPVAG 266 >ref|YP_530140.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] gb|ABD85821.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] Length = 268 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/263 (81%), Positives = 236/263 (89%) Query: 5 MFKDLFSLKGRVALVTGGSRGIGKMIAAGFLAQGAARVYITARKAGPCEATAQELSAAYD 64 MFKDLFSL+GRVAL+TGGSRGIGKMIAAGFLAQGAARVYITARKA PCEATAQEL+A Y Sbjct: 1 MFKDLFSLQGRVALITGGSRGIGKMIAAGFLAQGAARVYITARKAAPCEATAQELTAQYQ 60 Query: 65 GECIALPIDISTVEGCEKLAGEIIKREPKLDILVNNAGAAWGADFDEFPESGWDKVMDLN 124 GECIALPIDIST+ G LA EI KREP+LDILVNNAGAAWGADFDEFPESGWDKV+DLN Sbjct: 61 GECIALPIDISTLAGIALLAAEIAKREPRLDILVNNAGAAWGADFDEFPESGWDKVVDLN 120 Query: 125 VKSIFFLTKALAKPLRAAATHDKPGKVINIASIDGIFVNPMETYSYAASKAAVIHLTRRM 184 +K+ FFLTKAL PLRAAA+ ++PGKVINIASIDGIFVNP+ETY YAASKA +IHLTRRM Sbjct: 121 LKTPFFLTKALHAPLRAAASRERPGKVINIASIDGIFVNPLETYPYAASKAGLIHLTRRM 180 Query: 185 ATRLIKDNINVTAIAPGAFKSDMNRAARDHADEVAKRVPAKRVGSDEDMAGTAIYLASRA 244 A RLIKD++ VTAIAPG F SDMN+AARD+AD VA RVPA R+GSDEDMAG AIYLASRA Sbjct: 181 AVRLIKDHVVVTAIAPGPFSSDMNKAARDNADAVAARVPAGRIGSDEDMAGAAIYLASRA 240 Query: 245 GDYVVGTTIAVDGGVVYATAGLE 267 GDYVVG T+AVDGG+VYA G + Sbjct: 241 GDYVVGATLAVDGGIVYANPGFQ 263 >ref|YP_779413.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisA53] gb|ABJ04433.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisA53] Length = 268 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/263 (79%), Positives = 232/263 (88%) Query: 5 MFKDLFSLKGRVALVTGGSRGIGKMIAAGFLAQGAARVYITARKAGPCEATAQELSAAYD 64 MF +LFSL+GRVALVTGGSRGIG+MIAAGFLAQGAA+VYITARKA CEATAQEL+A YD Sbjct: 1 MFDNLFSLQGRVALVTGGSRGIGRMIAAGFLAQGAAKVYITARKAPACEATAQELTAQYD 60 Query: 65 GECIALPIDISTVEGCEKLAGEIIKREPKLDILVNNAGAAWGADFDEFPESGWDKVMDLN 124 GECIALPIDIST+ G EKLA EI RE +LDILVNNAGAAWGA D+FPESGWDKVMDLN Sbjct: 61 GECIALPIDISTMAGIEKLAAEIASRESRLDILVNNAGAAWGAPLDDFPESGWDKVMDLN 120 Query: 125 VKSIFFLTKALAKPLRAAATHDKPGKVINIASIDGIFVNPMETYSYAASKAAVIHLTRRM 184 VK+ FFLTKAL PLRAAA+ +P KVIN+ASIDGIFVNPMETY YAASKA +IHLTRR+ Sbjct: 121 VKTPFFLTKALHAPLRAAASAVQPAKVINVASIDGIFVNPMETYPYAASKAGLIHLTRRL 180 Query: 185 ATRLIKDNINVTAIAPGAFKSDMNRAARDHADEVAKRVPAKRVGSDEDMAGTAIYLASRA 244 A RLIK++I VTAIAPG F SDMN+AARDHAD VA RVP+ R+G DEDMAGTAIYLASRA Sbjct: 181 AARLIKEHIVVTAIAPGPFSSDMNKAARDHADAVASRVPSGRIGCDEDMAGTAIYLASRA 240 Query: 245 GDYVVGTTIAVDGGVVYATAGLE 267 GDYVVG TIAVDGG+VYA G++ Sbjct: 241 GDYVVGATIAVDGGIVYANPGIQ 263 >ref|YP_004111249.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] gb|ADU46516.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] Length = 268 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/263 (79%), Positives = 231/263 (87%) Query: 5 MFKDLFSLKGRVALVTGGSRGIGKMIAAGFLAQGAARVYITARKAGPCEATAQELSAAYD 64 MFKDLFSL+GRVALVTGGSRGIGKMIAAGFLA GA RVYITARKA C+ATA EL+ Y Sbjct: 1 MFKDLFSLQGRVALVTGGSRGIGKMIAAGFLAYGATRVYITARKAAVCQATADELTEMYP 60 Query: 65 GECIALPIDISTVEGCEKLAGEIIKREPKLDILVNNAGAAWGADFDEFPESGWDKVMDLN 124 GECIALPIDIST+ G + LA EI +RE KLDILVNNAGAAW ADFDEFPESGWDKVMDLN Sbjct: 61 GECIALPIDISTMAGIDTLAAEIKRRETKLDILVNNAGAAWAADFDEFPESGWDKVMDLN 120 Query: 125 VKSIFFLTKALAKPLRAAATHDKPGKVINIASIDGIFVNPMETYSYAASKAAVIHLTRRM 184 VK+ FFLTKALA LRAAA+ ++PGKVINIASIDGIFVNP+ETY YAASKA +IHLTRRM Sbjct: 121 VKTPFFLTKALAPQLRAAASAEQPGKVINIASIDGIFVNPLETYPYAASKAGLIHLTRRM 180 Query: 185 ATRLIKDNINVTAIAPGAFKSDMNRAARDHADEVAKRVPAKRVGSDEDMAGTAIYLASRA 244 A RLIKD+I VTAIAPG F SDMN+AARD AD VAKRVPA R+G+DEDMAGTA++LASRA Sbjct: 181 AVRLIKDHIVVTAIAPGPFASDMNKAARDEADAVAKRVPAGRIGTDEDMAGTAVFLASRA 240 Query: 245 GDYVVGTTIAVDGGVVYATAGLE 267 GDYVVG+T+ VDGGV +A G++ Sbjct: 241 GDYVVGSTVTVDGGVAFANPGIK 263