BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0016.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767717.1| acetyl-CoA synthetase [Bradyrhizobium japonicum... 800 0.0 ref|YP_568017.1| benzoate-CoA ligase family [Rhodopseudomonas pa... 794 0.0 ref|YP_488250.1| benzoate-CoA ligase family [Rhodopseudomonas pa... 791 0.0 ref|YP_001208602.1| putative AMP-dependent synthetase and ligase... 785 0.0 ref|YP_001236918.1| putative AMP-dependent synthetase and ligase... 780 0.0 >ref|NP_767717.1| acetyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC46342.1| acetyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] Length = 513 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/448 (85%), Positives = 409/448 (91%) Query: 1 MIMLDTVDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYILGDCRARVLFVSEALLPVVKDI 60 MIMLDTVDFPIVFLGAIRAG+VPVPLNTLLTA+QYAYIL DCRARVLFVSEAL PV++D+ Sbjct: 63 MIMLDTVDFPIVFLGAIRAGIVPVPLNTLLTADQYAYILADCRARVLFVSEALYPVIRDV 122 Query: 61 IARMPDLEHVVVSGKDAHGHNKLSDEIARESDVFATAPTHADEPAFWLYSSGSTGMPKGV 120 + RMPDLEHVVVSG +GH +L++E+A ESD F TA TH DEPAFWLYSSGSTGMPKGV Sbjct: 123 VGRMPDLEHVVVSGAKQNGHKQLAEELADESDQFTTAATHPDEPAFWLYSSGSTGMPKGV 182 Query: 121 RHLHSNLAATAETYAKQVLGIREDDVGLSAAKLFFAYGLGNALTFPMSVGASTVLNFERP 180 RHLHSNL ATA+TYA+QVLGIRE DV LSAAKLFFAYGLGNALTFPMSVGA+ VLN ERP Sbjct: 183 RHLHSNLQATADTYARQVLGIRESDVCLSAAKLFFAYGLGNALTFPMSVGATVVLNSERP 242 Query: 181 TPAVMFALMNKYHPSIFFGVPTLFAAMLNDEAMKAQAAGNRLRVCTSAGEALPESVGNAW 240 TPA MF LMN+Y+PSIF+GVPTLFAAMLNDE MK++ G LR+CTSAGEALPESVGN+W Sbjct: 243 TPARMFDLMNRYNPSIFYGVPTLFAAMLNDETMKSERGGKSLRICTSAGEALPESVGNSW 302 Query: 241 RARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYKVRLVNELGADVADGEVGE 300 +ARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSG+PVPGY VRLVNE G DVADGEVGE Sbjct: 303 KARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGKPVPGYAVRLVNEAGQDVADGEVGE 362 Query: 301 LLVDAPSAGESYWNQRAKSRATFEGAWTRTGDKYTRDADGRYTFCGRADDMFKVSGIWVS 360 LLVDAPSAGE YWNQR KSR TFEG WTRTGDKY RDA+GRYTFCGRADDMFKVSGIWVS Sbjct: 363 LLVDAPSAGEGYWNQRHKSRRTFEGPWTRTGDKYVRDAEGRYTFCGRADDMFKVSGIWVS 422 Query: 361 PFEVESALITHPAVLEAAVVPEADPEGLLKPKAYVVLRPESSAAGLHEALKEHVKQKIGP 420 PFEVESALITHPAVLEAAVVPEADPEGLLKPKA+VVLR + A L E LKEHVKQKIGP Sbjct: 423 PFEVESALITHPAVLEAAVVPEADPEGLLKPKAFVVLRQGAKTANLQEMLKEHVKQKIGP 482 Query: 421 WKYPRWIDVVDNLPKTATGKIQRFKLRE 448 WKYPRWIDVVD+LPKTATGKIQRFKLRE Sbjct: 483 WKYPRWIDVVDSLPKTATGKIQRFKLRE 510 >ref|YP_568017.1| benzoate-CoA ligase family [Rhodopseudomonas palustris BisB5] gb|ABE38116.1| benzoate-CoA ligase [Rhodopseudomonas palustris BisB5] Length = 518 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/448 (85%), Positives = 416/448 (92%) Query: 1 MIMLDTVDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYILGDCRARVLFVSEALLPVVKDI 60 MIMLDT+DFPIVFLGAIRAGVVPVPLNTLLTAEQYAY+L DCRARVLFVSEAL+PVVKDI Sbjct: 67 MIMLDTIDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYVLADCRARVLFVSEALVPVVKDI 126 Query: 61 IARMPDLEHVVVSGKDAHGHNKLSDEIARESDVFATAPTHADEPAFWLYSSGSTGMPKGV 120 IA +P+L HVVVSG DAHGH KL+DE+A+ESD F TA THA+EPAFWLYSSGSTGMPKGV Sbjct: 127 IAGLPELTHVVVSGGDAHGHLKLADELAQESDAFETAATHAEEPAFWLYSSGSTGMPKGV 186 Query: 121 RHLHSNLAATAETYAKQVLGIREDDVGLSAAKLFFAYGLGNALTFPMSVGASTVLNFERP 180 RHLH+NLAATAETYA+QVLGIREDDV LSAAKLFFAYGLGN+LTFP+SVGA+TVLN ERP Sbjct: 187 RHLHANLAATAETYARQVLGIREDDVVLSAAKLFFAYGLGNSLTFPLSVGATTVLNAERP 246 Query: 181 TPAVMFALMNKYHPSIFFGVPTLFAAMLNDEAMKAQAAGNRLRVCTSAGEALPESVGNAW 240 TPAV+F LM + HP+IF GVPTLFAAMLND A+K + AGNRLR+CTSAGEALPESVG AW Sbjct: 247 TPAVVFKLMQRTHPTIFCGVPTLFAAMLNDPALKTETAGNRLRICTSAGEALPESVGLAW 306 Query: 241 RARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYKVRLVNELGADVADGEVGE 300 +ARFG DILDGVGSTELLHIFLSNAPGDI+YG+SGRPVPGYKVRLVNE GADVADGEVGE Sbjct: 307 KARFGADILDGVGSTELLHIFLSNAPGDIQYGTSGRPVPGYKVRLVNEAGADVADGEVGE 366 Query: 301 LLVDAPSAGESYWNQRAKSRATFEGAWTRTGDKYTRDADGRYTFCGRADDMFKVSGIWVS 360 LLVDAPSAGE YWNQR+KSRATFEG WTRTGDKY RDA+GRYTFCGRADDMFKVSGIWVS Sbjct: 367 LLVDAPSAGEGYWNQRSKSRATFEGNWTRTGDKYIRDANGRYTFCGRADDMFKVSGIWVS 426 Query: 361 PFEVESALITHPAVLEAAVVPEADPEGLLKPKAYVVLRPESSAAGLHEALKEHVKQKIGP 420 PFEVESALITHPAVLEAAVVP+AD +GLLKP+AYVVLR +A GL E LK+HVK K+GP Sbjct: 427 PFEVESALITHPAVLEAAVVPDADFDGLLKPRAYVVLRDGVAADGLFEQLKDHVKHKVGP 486 Query: 421 WKYPRWIDVVDNLPKTATGKIQRFKLRE 448 WKYPRWI+VV +LPKTATGKIQRFKLR+ Sbjct: 487 WKYPRWIEVVPSLPKTATGKIQRFKLRD 514 >ref|YP_488250.1| benzoate-CoA ligase family [Rhodopseudomonas palustris HaA2] gb|ABD09339.1| benzoate-CoA ligase [Rhodopseudomonas palustris HaA2] Length = 517 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/448 (84%), Positives = 417/448 (93%) Query: 1 MIMLDTVDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYILGDCRARVLFVSEALLPVVKDI 60 MIMLDTV+FP+VFLGAIRAGVVPVPLNTLLTAEQYAY+L DCRARVLFVSEAL PV+KDI Sbjct: 67 MIMLDTVEFPVVFLGAIRAGVVPVPLNTLLTAEQYAYVLADCRARVLFVSEALYPVLKDI 126 Query: 61 IARMPDLEHVVVSGKDAHGHNKLSDEIARESDVFATAPTHADEPAFWLYSSGSTGMPKGV 120 ++ +PDL HVVVSG DAHGH KL+DE+A+ESD TA THA+EPAFWLYSSGSTGMPKGV Sbjct: 127 LSGLPDLAHVVVSGGDAHGHLKLADELAQESDACETAATHAEEPAFWLYSSGSTGMPKGV 186 Query: 121 RHLHSNLAATAETYAKQVLGIREDDVGLSAAKLFFAYGLGNALTFPMSVGASTVLNFERP 180 RHLH+NLAATAETYA+QVLGIREDDV LSAAKLFFAYGLGN+LTFP+SVGA+TVLN ERP Sbjct: 187 RHLHANLAATAETYARQVLGIREDDVVLSAAKLFFAYGLGNSLTFPLSVGATTVLNSERP 246 Query: 181 TPAVMFALMNKYHPSIFFGVPTLFAAMLNDEAMKAQAAGNRLRVCTSAGEALPESVGNAW 240 TPAV+F LM +Y+P+IF GVPTLFAAMLND A+K++AAG+RLR+CTSAGEALPESVG AW Sbjct: 247 TPAVVFKLMQRYNPTIFCGVPTLFAAMLNDSALKSEAAGSRLRICTSAGEALPESVGLAW 306 Query: 241 RARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYKVRLVNELGADVADGEVGE 300 +ARFG DILDGVGSTELLHIFLSNAPGDIKYG+SG+PVPGYKVRLVNE G +VADGEVGE Sbjct: 307 KARFGADILDGVGSTELLHIFLSNAPGDIKYGTSGKPVPGYKVRLVNETGTEVADGEVGE 366 Query: 301 LLVDAPSAGESYWNQRAKSRATFEGAWTRTGDKYTRDADGRYTFCGRADDMFKVSGIWVS 360 LLVDAPSAGE YWNQR+KSRATFEG WTRTGDKY RDADGRYTFCGRADDMFKVSGIWVS Sbjct: 367 LLVDAPSAGEGYWNQRSKSRATFEGNWTRTGDKYIRDADGRYTFCGRADDMFKVSGIWVS 426 Query: 361 PFEVESALITHPAVLEAAVVPEADPEGLLKPKAYVVLRPESSAAGLHEALKEHVKQKIGP 420 PFEVESALITHPAVLEAAVVP+AD +GLLKP+AYVVLR + GL EALK+HVKQK+GP Sbjct: 427 PFEVESALITHPAVLEAAVVPDADFDGLLKPRAYVVLREGVAPDGLFEALKDHVKQKVGP 486 Query: 421 WKYPRWIDVVDNLPKTATGKIQRFKLRE 448 WKYPRWI+VV +LPKTATGKIQRFKLRE Sbjct: 487 WKYPRWIEVVPSLPKTATGKIQRFKLRE 514 >ref|YP_001208602.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. ORS 278] emb|CAL80387.1| Putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. ORS 278] Length = 507 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/449 (83%), Positives = 410/449 (91%), Gaps = 1/449 (0%) Query: 1 MIMLDTVDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYILGDCRARVLFVSEALLPVVKDI 60 MIMLDTVDFP VFLGA+RAG+VPVPLNTLLT EQYAY+L DCRARVLFVSEAL P VKDI Sbjct: 55 MIMLDTVDFPAVFLGAMRAGIVPVPLNTLLTTEQYAYVLADCRARVLFVSEALYPAVKDI 114 Query: 61 IA-RMPDLEHVVVSGKDAHGHNKLSDEIARESDVFATAPTHADEPAFWLYSSGSTGMPKG 119 + RMPDL+ VVVSG +A GH LS+E+A ESD F T TH DEPAFWLYSSGSTGMPKG Sbjct: 115 VGGRMPDLDCVVVSGTNAFGHKLLSEELAGESDQFETVATHEDEPAFWLYSSGSTGMPKG 174 Query: 120 VRHLHSNLAATAETYAKQVLGIREDDVGLSAAKLFFAYGLGNALTFPMSVGASTVLNFER 179 VRHLH NLAATAETYAKQVLGIRE D+ LSAAKLFFAYGLGNALTFP+SVGA+T+LN ER Sbjct: 175 VRHLHGNLAATAETYAKQVLGIRESDICLSAAKLFFAYGLGNALTFPLSVGATTILNSER 234 Query: 180 PTPAVMFALMNKYHPSIFFGVPTLFAAMLNDEAMKAQAAGNRLRVCTSAGEALPESVGNA 239 PTPA+MF LMN+Y+P+IF+GVPTLFAAML+DE+++ + AGN LR+CTSAGEALPESVGNA Sbjct: 235 PTPALMFKLMNRYNPTIFYGVPTLFAAMLHDESLRHEKAGNALRICTSAGEALPESVGNA 294 Query: 240 WRARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYKVRLVNELGADVADGEVG 299 W+ARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGY+VRLVNE G DV DGEVG Sbjct: 295 WKARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYQVRLVNEAGQDVPDGEVG 354 Query: 300 ELLVDAPSAGESYWNQRAKSRATFEGAWTRTGDKYTRDADGRYTFCGRADDMFKVSGIWV 359 E+LV APSAGE YWNQR K+R+TFEG WTRTGDKY RDA+GRYTFCGR+DDMFKVSGIWV Sbjct: 355 EMLVHAPSAGEGYWNQRHKTRSTFEGYWTRTGDKYVRDAEGRYTFCGRSDDMFKVSGIWV 414 Query: 360 SPFEVESALITHPAVLEAAVVPEADPEGLLKPKAYVVLRPESSAAGLHEALKEHVKQKIG 419 SPFEVESALITHP+VLEAAVVP+ADPEGLLKPKAYVVLRP A LHEALKEHVKQKIG Sbjct: 415 SPFEVESALITHPSVLEAAVVPDADPEGLLKPKAYVVLRPSVDRATLHEALKEHVKQKIG 474 Query: 420 PWKYPRWIDVVDNLPKTATGKIQRFKLRE 448 PWKYPRWI+VV++LPKTATGKIQRFKLRE Sbjct: 475 PWKYPRWIEVVESLPKTATGKIQRFKLRE 503 >ref|YP_001236918.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. BTAi1] gb|ABQ33012.1| benzoate-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 506 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/448 (83%), Positives = 407/448 (90%) Query: 1 MIMLDTVDFPIVFLGAIRAGVVPVPLNTLLTAEQYAYILGDCRARVLFVSEALLPVVKDI 60 MIMLDTVDFP VFLGA+RAG+VPVPLNTLLT+EQYAY+L DCRARVLFVSE L PVVKDI Sbjct: 55 MIMLDTVDFPAVFLGAMRAGIVPVPLNTLLTSEQYAYVLADCRARVLFVSEPLYPVVKDI 114 Query: 61 IARMPDLEHVVVSGKDAHGHNKLSDEIARESDVFATAPTHADEPAFWLYSSGSTGMPKGV 120 + RMPDL+ VVVSG A GH L++E+ARESD F T TH DEPAFWLYSSGSTGMPKGV Sbjct: 115 VGRMPDLDCVVVSGSHALGHKLLAEELARESDQFDTVATHEDEPAFWLYSSGSTGMPKGV 174 Query: 121 RHLHSNLAATAETYAKQVLGIREDDVGLSAAKLFFAYGLGNALTFPMSVGASTVLNFERP 180 RHLH NLAATAETYAKQVLGIRE DV SAAKLFFAYGLGNALTFP+SVGA+T+LN RP Sbjct: 175 RHLHGNLAATAETYAKQVLGIRESDVCFSAAKLFFAYGLGNALTFPLSVGATTILNSGRP 234 Query: 181 TPAVMFALMNKYHPSIFFGVPTLFAAMLNDEAMKAQAAGNRLRVCTSAGEALPESVGNAW 240 TPA+MF L+N+Y+P+IF+GVPTLFAAML+DE+++ + AG+ LR+CTSAGEALPESVG+AW Sbjct: 235 TPALMFKLLNRYNPTIFYGVPTLFAAMLHDESLRHETAGSGLRICTSAGEALPESVGHAW 294 Query: 241 RARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYKVRLVNELGADVADGEVGE 300 +ARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGY+VRLVNE G DV DGE+GE Sbjct: 295 KARFGVDILDGVGSTELLHIFLSNAPGDIKYGSSGRPVPGYQVRLVNEAGQDVPDGEIGE 354 Query: 301 LLVDAPSAGESYWNQRAKSRATFEGAWTRTGDKYTRDADGRYTFCGRADDMFKVSGIWVS 360 +LV APSAGE YWNQR K+RATFEG WTRTGDKY RDA+GRYTFCGR+DDMFKVSGIWVS Sbjct: 355 MLVHAPSAGEGYWNQRHKTRATFEGYWTRTGDKYVRDAEGRYTFCGRSDDMFKVSGIWVS 414 Query: 361 PFEVESALITHPAVLEAAVVPEADPEGLLKPKAYVVLRPESSAAGLHEALKEHVKQKIGP 420 PFEVESALITHP+VLEAAVVPEADPEGLLKPKAYVVLRP LHEALKEHVKQKIGP Sbjct: 415 PFEVESALITHPSVLEAAVVPEADPEGLLKPKAYVVLRPSVDRETLHEALKEHVKQKIGP 474 Query: 421 WKYPRWIDVVDNLPKTATGKIQRFKLRE 448 WKYPRWI+VVD LPKTATGKIQRFKLRE Sbjct: 475 WKYPRWIEVVDALPKTATGKIQRFKLRE 502