BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0013.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773388.1| hypothetical protein blr6748 [Bradyrhizobium ja...   144   3e-33
ref|ZP_05843271.1| hypothetical protein Rsw2DRAFT_1258 [Rhodobac...    47   0.001
ref|NP_104037.1| hypothetical protein mll2776 [Mesorhizobium lot...    46   0.002
ref|YP_004141299.1| hypothetical protein Mesci_2097 [Mesorhizobi...    46   0.002
ref|YP_004610785.1| hypothetical protein Mesop_2215 [Mesorhizobi...    46   0.002

>ref|NP_773388.1| hypothetical protein blr6748 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52013.1| blr6748 [Bradyrhizobium japonicum USDA 110]
          Length = 207

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 1   MFAGPPGAKAYACFVRRYDENHLAQHPKQKVSAMKLLVSAENAPEDKATNYSFRLGVTYR 60
           ++AG PG KAYACFVRRYD  HLA+HPKQKV++MKLL+SAE   EDK  + SFRLG  YR
Sbjct: 41  IYAGAPGDKAYACFVRRYDAEHLARHPKQKVASMKLLISAETDKEDKQLHNSFRLGFRYR 100

Query: 61  HRSGNFDSSGYC-NHAIAAESGREIRFECGVDCEGGGITTS 100
           HRSG+FDSSG C +HA+  + G E+R  CGVDCEGGGI  +
Sbjct: 101 HRSGDFDSSGSCGSHAVLLKEGDEVRMGCGVDCEGGGIEVA 141


>ref|ZP_05843271.1| hypothetical protein Rsw2DRAFT_1258 [Rhodobacter sp. SW2]
 gb|EEW25827.1| hypothetical protein Rsw2DRAFT_1258 [Rhodobacter sp. SW2]
          Length = 164

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 5   PPGAKAYACFVRRYDENHLAQHPKQKVSAMKLLVSAENAPEDKATNYSFRLGVTYRHRSG 64
           P  A    CF R Y   HLA HP+Q+V+++  +   ++ P D     +  + VT R    
Sbjct: 31  PQTAFGSGCFRRDYSNAHLASHPQQRVTSIA-VGRMQDPPADDLLIVN--IAVTLRGSGE 87

Query: 65  NFDSSGYCNHAIAAESGREIRFECGVDCEGGGITTS 100
            F  SGYC        G+  R +CG++ + G  T +
Sbjct: 88  VFIGSGYCE-------GKGARLDCGMEGDAGSFTLT 116


>ref|NP_104037.1| hypothetical protein mll2776 [Mesorhizobium loti MAFF303099]
 dbj|BAB49823.1| mll2776 [Mesorhizobium loti MAFF303099]
          Length = 370

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 10  AYACFVRRYDENHLAQHPKQKVSAMKLLVS-------AENAPEDKATNYSFRLGVTYRHR 62
           A ACF R YD  HL  HPKQKV+ +             E    +  T+Y+  L  T R  
Sbjct: 47  ADACFGRVYDAAHLKAHPKQKVARIFFYYGHDPVSRPNEEPTANAETSYNGFLTTTVRGA 106

Query: 63  SGNFDSSGYCNHAIAAESGREIRFECGVDCE 93
                + G+CNH   +E G      CG+DC+
Sbjct: 107 KAPQWAGGWCNH--ESEDGTSGPIRCGMDCD 135


>ref|YP_004141299.1| hypothetical protein Mesci_2097 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gb|ADV11249.1| hypothetical protein Mesci_2097 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 10  AYACFVRRYDENHLAQHPKQKVSAMKLLVS-------AENAPEDKATNYSFRLGVTYRHR 62
           A ACF R YD  HL  HPKQKV+ +             E    +  T+Y+  +  T R  
Sbjct: 49  ADACFGRVYDGAHLKAHPKQKVARIFFYYGHDPVSRPNEEPTGNSDTSYNAFIATTVRGA 108

Query: 63  SGNFDSSGYCNHAIAAESGREIRFECGVDCE 93
                + G+CNH  A+E G+     CG++C+
Sbjct: 109 KSPEWAGGWCNH--ASEDGKTGPVHCGMECD 137


>ref|YP_004610785.1| hypothetical protein Mesop_2215 [Mesorhizobium opportunistum
           WSM2075]
 gb|AEH86691.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 367

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 10  AYACFVRRYDENHLAQHPKQKVSAMKLLVS-------AENAPEDKATNYSFRLGVTYRHR 62
           A ACF R YD  H+  +PKQKV+ +             E    +  T+Y+  L  T R  
Sbjct: 44  ADACFGRVYDAAHMQAYPKQKVARIFFYYGHDPVSRPNEEPSANSDTSYNGFLTTTVRGA 103

Query: 63  SGNFDSSGYCNHAIAAESGREIRFECGVDCE 93
                + G+CNHA   ++  +IR  CG+DC+
Sbjct: 104 KAPQWAGGWCNHASEDDASGQIR--CGMDCD 132