BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0007.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001992971.1| extracellular ligand-binding receptor [Rhodo... 420 e-115 ref|NP_948824.1| putative branched-chain amino acid transport sy... 419 e-115 ref|YP_001990999.1| extracellular ligand-binding receptor [Rhodo... 339 4e-91 ref|NP_947143.1| putative branched chain amino acid ABC transpor... 337 1e-90 ref|YP_004110029.1| extracellular ligand-binding receptor [Rhodo... 336 3e-90 >ref|YP_001992971.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] gb|ACF02496.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 403 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/298 (64%), Positives = 235/298 (78%) Query: 1 VLAVFSAVGTAPNISVQKYLNIKRVPQLFVSSGATRWNDPKQFPWTVGFNPTYELEGRLY 60 VLA+FS +GT PNI+VQKYLNIK+VPQL SGATRWND K FPWT G PTY+ EGR+Y Sbjct: 106 VLAMFSILGTGPNIAVQKYLNIKKVPQLLPFSGATRWNDAKHFPWTTGSQPTYKTEGRIY 165 Query: 61 AKYILKTKPDAKIAVITPNEDAGKDYLRGFKDGLGEHVGQIVAETTYLTTDPTIDSQMVT 120 AK+IL KP+AKIAVITP E+AG+DYL GFK+GLG+HV QIV+E Y TTDPT+DSQ+V Sbjct: 166 AKWILANKPNAKIAVITPAEEAGRDYLAGFKEGLGDHVNQIVSEAVYETTDPTVDSQIVK 225 Query: 121 MRESGADVFFAEATPKFAAQALRKAASMGWKPLTILPTVSNSVSAVLEPAGLENVIGVVT 180 + +GADV F E TPKFAAQ ++KAA +GWKP ILP VSNSV +VL+PAGLEN +G+VT Sbjct: 226 FKAAGADVLFNECTPKFAAQVIKKAAELGWKPQIILPAVSNSVGSVLKPAGLENAVGIVT 285 Query: 181 GLYLKDPTDPRWADDPAQQEFAAWMKKYQPNASPGDLFNVQGYTVAQVMTAVLKNCNGDY 240 G Y+KDP DPRWA+DP Q++ AWMK Y A P D+FNV GYT+ Q+M VL+ D Sbjct: 286 GAYVKDPGDPRWANDPGMQQWHAWMKTYNAGADPADIFNVYGYTITQIMELVLRRAGDDL 345 Query: 241 SRDNIIRQATNLKALELPMLLPGIKVQTEPDNVTPIRQIQMARFDGKSWALFGDVLSD 298 +R N+++Q +L +ELPMLLPGIK+Q PD TPIRQ+QMARF+G SW LFGDVLS+ Sbjct: 346 TRANLMKQIESLDGVELPMLLPGIKLQMSPDQRTPIRQLQMARFNGTSWELFGDVLSE 403 >ref|NP_948824.1| putative branched-chain amino acid transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE28927.1| putative branched-chain amino acid transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] Length = 403 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/298 (64%), Positives = 235/298 (78%) Query: 1 VLAVFSAVGTAPNISVQKYLNIKRVPQLFVSSGATRWNDPKQFPWTVGFNPTYELEGRLY 60 VLA+FS +GT PNI+VQKYLNIK+VPQL SGATRWND K FPWT G PTY+ EGR+Y Sbjct: 106 VLAMFSILGTGPNIAVQKYLNIKKVPQLLPFSGATRWNDAKHFPWTTGSQPTYKTEGRIY 165 Query: 61 AKYILKTKPDAKIAVITPNEDAGKDYLRGFKDGLGEHVGQIVAETTYLTTDPTIDSQMVT 120 AK+IL KP+AKIAVITP E+AG+DYL GFK+GLG+HV QIV+E Y TTDPT+DSQ+V Sbjct: 166 AKWILANKPNAKIAVITPAEEAGRDYLAGFKEGLGDHVNQIVSEAVYETTDPTVDSQIVK 225 Query: 121 MRESGADVFFAEATPKFAAQALRKAASMGWKPLTILPTVSNSVSAVLEPAGLENVIGVVT 180 + +GADV F E TPKFAAQ ++KAA +GWKP ILP VSNSV +VL+PAGLEN +G+VT Sbjct: 226 FKAAGADVLFNECTPKFAAQVIKKAAELGWKPQIILPAVSNSVGSVLKPAGLENAVGIVT 285 Query: 181 GLYLKDPTDPRWADDPAQQEFAAWMKKYQPNASPGDLFNVQGYTVAQVMTAVLKNCNGDY 240 G Y+KDP DPRWA+DP Q++ AWMK Y A P D+FNV GYT+ Q+M VL+ D Sbjct: 286 GAYVKDPGDPRWANDPGMQQWHAWMKTYNAGADPADIFNVYGYTITQIMELVLRRAGDDL 345 Query: 241 SRDNIIRQATNLKALELPMLLPGIKVQTEPDNVTPIRQIQMARFDGKSWALFGDVLSD 298 +R N+++Q +L +ELPMLLPGIK+Q PD TPIRQ+QMARF+G SW LFGDVLS+ Sbjct: 346 TRANLMKQIESLDGVELPMLLPGIKLQMSPDQRTPIRQLQMARFNGTSWELFGDVLSE 403 >ref|YP_001990999.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] gb|ACF00524.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 411 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 152/296 (51%), Positives = 211/296 (71%) Query: 1 VLAVFSAVGTAPNISVQKYLNIKRVPQLFVSSGATRWNDPKQFPWTVGFNPTYELEGRLY 60 VL +FS +GT N ++QKYLN K+VP LF++SGAT+WNDPK FPWT+G+ P+Y+ EGR+Y Sbjct: 106 VLFMFSPLGTPSNTAIQKYLNAKKVPHLFLASGATKWNDPKHFPWTMGWLPSYQSEGRIY 165 Query: 61 AKYILKTKPDAKIAVITPNEDAGKDYLRGFKDGLGEHVGQIVAETTYLTTDPTIDSQMVT 120 AKYILK KPDAKIAV+ +D GKDYL+G KDGLG V Q+V E +Y T+PT+DS +V Sbjct: 166 AKYILKEKPDAKIAVLYQGDDFGKDYLKGLKDGLGAKVSQVVIEDSYELTEPTVDSHIVK 225 Query: 121 MRESGADVFFAEATPKFAAQALRKAASMGWKPLTILPTVSNSVSAVLEPAGLENVIGVVT 180 ++ + DV ATPKFAAQ ++K A + WKP+ I+P VS S +V++PAG EN G+V+ Sbjct: 226 IKAANPDVLVIFATPKFAAQTIKKVAELAWKPMMIVPNVSASTGSVMKPAGFENAQGIVS 285 Query: 181 GLYLKDPTDPRWADDPAQQEFAAWMKKYQPNASPGDLFNVQGYTVAQVMTAVLKNCNGDY 240 Y KD TD +W +DP + + +M KY P+AS D GY +A+ + ++K C D Sbjct: 286 AAYAKDATDKQWENDPGMKAYYEFMAKYAPDASRADSSFTTGYNIAETVAVLIKQCGDDL 345 Query: 241 SRDNIIRQATNLKALELPMLLPGIKVQTEPDNVTPIRQIQMARFDGKSWALFGDVL 296 SR+N+++QA NLK ++L LLPG+ + T P + PI Q+QM RF+G++W LFGDV+ Sbjct: 346 SRENVMKQAANLKGVQLGGLLPGVTLNTSPTDFAPIEQLQMMRFEGENWKLFGDVI 401 >ref|NP_947143.1| putative branched chain amino acid ABC transporter periplasmic binding protein [Rhodopseudomonas palustris CGA009] emb|CAE27239.1| putative periplasmic binding protein for ABC transporter for branched chain amino acids [Rhodopseudomonas palustris CGA009] Length = 411 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 151/296 (51%), Positives = 211/296 (71%) Query: 1 VLAVFSAVGTAPNISVQKYLNIKRVPQLFVSSGATRWNDPKQFPWTVGFNPTYELEGRLY 60 VL +FS +GT N ++QKYLN K+VP LF++SGAT+WNDPK FPWT+G+ P+Y+ EGR+Y Sbjct: 106 VLFMFSPLGTPSNTAIQKYLNAKKVPHLFLASGATKWNDPKHFPWTMGWLPSYQSEGRIY 165 Query: 61 AKYILKTKPDAKIAVITPNEDAGKDYLRGFKDGLGEHVGQIVAETTYLTTDPTIDSQMVT 120 AKYILK KP+AKIAV+ +D GKDYL+G KDGLG V Q+V E +Y T+PT+DS +V Sbjct: 166 AKYILKEKPEAKIAVLYQGDDFGKDYLKGLKDGLGAKVSQVVIEDSYELTEPTVDSHIVK 225 Query: 121 MRESGADVFFAEATPKFAAQALRKAASMGWKPLTILPTVSNSVSAVLEPAGLENVIGVVT 180 ++ + DV ATPKFAAQ ++K A + WKP+ I+P VS S +V++PAG EN G+V+ Sbjct: 226 IKAANPDVLVIFATPKFAAQTIKKVAELAWKPMMIVPNVSASTGSVMKPAGFENAQGIVS 285 Query: 181 GLYLKDPTDPRWADDPAQQEFAAWMKKYQPNASPGDLFNVQGYTVAQVMTAVLKNCNGDY 240 Y KD TD +W +DP + + +M KY P+AS D GY +A+ + ++K C D Sbjct: 286 AAYAKDATDKQWENDPGMKAYYEFMAKYAPDASRADSSFTTGYNIAETVAVLIKQCGDDL 345 Query: 241 SRDNIIRQATNLKALELPMLLPGIKVQTEPDNVTPIRQIQMARFDGKSWALFGDVL 296 SR+N+++QA NLK ++L LLPG+ + T P + PI Q+QM RF+G++W LFGDV+ Sbjct: 346 SRENVMKQAANLKGVQLGGLLPGVTLNTSPTDFAPIEQLQMMRFEGENWKLFGDVI 401 >ref|YP_004110029.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU45296.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 411 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 150/296 (50%), Positives = 210/296 (70%) Query: 1 VLAVFSAVGTAPNISVQKYLNIKRVPQLFVSSGATRWNDPKQFPWTVGFNPTYELEGRLY 60 VL +FS +GT N ++QKYLN K+VP LF++SGAT+WNDPK FPWT+G+ P+Y+ EGR+Y Sbjct: 106 VLFMFSPLGTPSNTAIQKYLNAKKVPHLFLASGATKWNDPKHFPWTMGWLPSYQSEGRIY 165 Query: 61 AKYILKTKPDAKIAVITPNEDAGKDYLRGFKDGLGEHVGQIVAETTYLTTDPTIDSQMVT 120 AKYILK KPDAKIAV+ +D GKDYL+G KDGLG Q+V E +Y T+PT+DS +V Sbjct: 166 AKYILKEKPDAKIAVLYQGDDFGKDYLKGLKDGLGAKASQVVVEDSYELTEPTVDSHIVK 225 Query: 121 MRESGADVFFAEATPKFAAQALRKAASMGWKPLTILPTVSNSVSAVLEPAGLENVIGVVT 180 ++ + DV ATPKFAAQ ++K A + WKP+ I+P VS S +V++PAG EN G+V+ Sbjct: 226 IKAANPDVLVIFATPKFAAQTIKKVAELAWKPMMIVPNVSASTGSVMKPAGFENAQGIVS 285 Query: 181 GLYLKDPTDPRWADDPAQQEFAAWMKKYQPNASPGDLFNVQGYTVAQVMTAVLKNCNGDY 240 Y KD TD +W +DP + + +M KY P+AS D + GY +A+ + ++K C D Sbjct: 286 ASYAKDATDKQWENDPGMKAYYEFMAKYAPDASRADSSFMTGYNIAETVAVLIKQCGDDL 345 Query: 241 SRDNIIRQATNLKALELPMLLPGIKVQTEPDNVTPIRQIQMARFDGKSWALFGDVL 296 SR+N+++QA NLK ++L LLPG+ + T + PI Q+QM RF+G++W LFGDV+ Sbjct: 346 SRENVMKQAANLKGVQLGGLLPGVTLNTSATDFAPIEQLQMMRFEGQNWKLFGDVI 401