BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0004.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobiu... 508 e-142 ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketogl... 497 e-139 ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp.... 489 e-136 ref|YP_002130538.1| glutamate synthase (NADPH) small chain [Phen... 411 e-113 ref|YP_003167797.1| 4Fe-4S ferredoxin iron-sulfur-binding domain... 401 e-110 >ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC52007.1| blr6742 [Bradyrhizobium japonicum USDA 110] Length = 599 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/271 (88%), Positives = 253/271 (93%) Query: 1 VPSGEPDETVPCDDVLVAVGQENAFPWIEADCGIEFDKWHMPKVDPKTFVSTNPKVFFGG 60 VPSG+P++T+PCDDVLVAVGQENAFPWIE DCGI FDKW+MP+VDPKTFVSTNPKVFFGG Sbjct: 329 VPSGDPEQTIPCDDVLVAVGQENAFPWIERDCGIAFDKWNMPQVDPKTFVSTNPKVFFGG 388 Query: 61 DAAFGPKNIIWAVAHGHDAALSIHRMLSGEDINERPLPEVHVSSQKMGIHEWSYDNDISA 120 DAAFGPKNIIWAVA GHDAALSIHR+LSGEDI ERPLPEVHVSSQKMGIHEWSYDNDIS Sbjct: 389 DAAFGPKNIIWAVAQGHDAALSIHRLLSGEDITERPLPEVHVSSQKMGIHEWSYDNDISV 448 Query: 121 DKRFKVPHRDKVVALKDIRAEVELGYDLKLALGEAQRCLNCDVQTVFSAPLCIECDACVD 180 DKRFKVPHRDKV+ALKDIR EVELGYD+KLALGEA RCLNCDVQTVFS LCIECDACVD Sbjct: 449 DKRFKVPHRDKVIALKDIRTEVELGYDVKLALGEAHRCLNCDVQTVFSTSLCIECDACVD 508 Query: 181 ICPMDCISFTENGEEDDLRQRLKAPSPHHDQALYVSGDLKTGRVMVKDEDVCLHCGLCAE 240 ICPMDCI+FTENGEE DLRQRLKAPS H DQ LYVS DLKTGRVMVKDEDVCLHCGLCAE Sbjct: 509 ICPMDCITFTENGEEPDLRQRLKAPSLHPDQDLYVSSDLKTGRVMVKDEDVCLHCGLCAE 568 Query: 241 RCPTGAWDMQKYLIDMVQAGSTCQSKARSAA 271 RCPTGAWDMQKYLI+M AGS C +K+RSAA Sbjct: 569 RCPTGAWDMQKYLIEMTHAGSACPTKSRSAA 599 >ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketoglutarate NADP oxidoreductase subunit gamma (korC-like) [Bradyrhizobium sp. ORS 278] emb|CAL79466.1| putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (korC-like) [Bradyrhizobium sp. ORS 278] Length = 599 Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust. Identities = 237/271 (87%), Positives = 246/271 (90%) Query: 1 VPSGEPDETVPCDDVLVAVGQENAFPWIEADCGIEFDKWHMPKVDPKTFVSTNPKVFFGG 60 VPSGEPD T CDDVLVAVGQENAFPWIEADCGI FDKWHMP VDPKTFVSTNPKVFFGG Sbjct: 329 VPSGEPDVTYDCDDVLVAVGQENAFPWIEADCGITFDKWHMPVVDPKTFVSTNPKVFFGG 388 Query: 61 DAAFGPKNIIWAVAHGHDAALSIHRMLSGEDINERPLPEVHVSSQKMGIHEWSYDNDISA 120 DAAFGPKNIIWAVA GH+AALSIHR+LSGED+ ERPLPEVHVSSQKMGIHEWSYDNDIS Sbjct: 389 DAAFGPKNIIWAVAQGHEAALSIHRLLSGEDVTERPLPEVHVSSQKMGIHEWSYDNDISP 448 Query: 121 DKRFKVPHRDKVVALKDIRAEVELGYDLKLALGEAQRCLNCDVQTVFSAPLCIECDACVD 180 +KRFKVPHRDKVVALKDIR EVELGYD+KLALGEA RCLNCDVQTVFS LCIECDAC D Sbjct: 449 EKRFKVPHRDKVVALKDIRTEVELGYDVKLALGEAHRCLNCDVQTVFSNTLCIECDACAD 508 Query: 181 ICPMDCISFTENGEEDDLRQRLKAPSPHHDQALYVSGDLKTGRVMVKDEDVCLHCGLCAE 240 ICPMDCI+FTENGEE DLR RLKAPS H DQ+LYVS DLKTGRVMVKDEDVCLHCGLCAE Sbjct: 509 ICPMDCITFTENGEEADLRSRLKAPSVHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAE 568 Query: 241 RCPTGAWDMQKYLIDMVQAGSTCQSKARSAA 271 RCPTGAWDMQKY I+ AG+ C SK RSAA Sbjct: 569 RCPTGAWDMQKYFIETTHAGTACPSKRRSAA 599 >ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] gb|ABQ38225.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] Length = 599 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/271 (85%), Positives = 245/271 (90%) Query: 1 VPSGEPDETVPCDDVLVAVGQENAFPWIEADCGIEFDKWHMPKVDPKTFVSTNPKVFFGG 60 VPSGEPD T CDDVLVAVGQENAFPWIEADCGIEFDK HMPKVDP TFVSTNPKVFFGG Sbjct: 329 VPSGEPDVTYDCDDVLVAVGQENAFPWIEADCGIEFDKRHMPKVDPTTFVSTNPKVFFGG 388 Query: 61 DAAFGPKNIIWAVAHGHDAALSIHRMLSGEDINERPLPEVHVSSQKMGIHEWSYDNDISA 120 DAAFGPKNIIWAVA GH+AALSIHR+LSGEDI ERPLPEVH+SSQKMGIHEWSYDND+S Sbjct: 389 DAAFGPKNIIWAVAQGHEAALSIHRLLSGEDITERPLPEVHISSQKMGIHEWSYDNDVSP 448 Query: 121 DKRFKVPHRDKVVALKDIRAEVELGYDLKLALGEAQRCLNCDVQTVFSAPLCIECDACVD 180 +KR+KVPHRDKVVALKDIR EVELGYD+KLALGEA RCLNCDVQTVFS LCIECDAC D Sbjct: 449 EKRYKVPHRDKVVALKDIRTEVELGYDVKLALGEAHRCLNCDVQTVFSNTLCIECDACAD 508 Query: 181 ICPMDCISFTENGEEDDLRQRLKAPSPHHDQALYVSGDLKTGRVMVKDEDVCLHCGLCAE 240 ICPMDCI+FT+NGEE DLR RL+APS H DQ+LYVS DLKTGRVMVKDEDVCLHCGLCAE Sbjct: 509 ICPMDCITFTDNGEEADLRSRLRAPSVHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAE 568 Query: 241 RCPTGAWDMQKYLIDMVQAGSTCQSKARSAA 271 RCPTGAWDMQKY I+ AG C SK RSAA Sbjct: 569 RCPTGAWDMQKYFIETTHAGHACPSKRRSAA 599 >ref|YP_002130538.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum HLK1] gb|ACG78109.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum HLK1] Length = 596 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 190/266 (71%), Positives = 222/266 (83%) Query: 1 VPSGEPDETVPCDDVLVAVGQENAFPWIEADCGIEFDKWHMPKVDPKTFVSTNPKVFFGG 60 VPSG PDE CDDVL+AVGQENAFPWIE D G+EFD+W +PKVDP T ST P VFFGG Sbjct: 331 VPSGAPDEHHECDDVLIAVGQENAFPWIERDIGLEFDEWGLPKVDPATMRSTIPNVFFGG 390 Query: 61 DAAFGPKNIIWAVAHGHDAALSIHRMLSGEDINERPLPEVHVSSQKMGIHEWSYDNDISA 120 DAAFGPKNIIWAVAHGH+AA+SIHR+ G+D+ ERP P + SQKMGIHEWSYDND+S Sbjct: 391 DAAFGPKNIIWAVAHGHEAAVSIHRLCEGQDVAERPPPHASLVSQKMGIHEWSYDNDVSN 450 Query: 121 DKRFKVPHRDKVVALKDIRAEVELGYDLKLALGEAQRCLNCDVQTVFSAPLCIECDACVD 180 D+R++VP R+K AL ++R EVELG+D LAL EA+RCLNCDVQTVF+ LCIECDACVD Sbjct: 451 DRRYRVPMREKAEALTNVRLEVELGFDRDLALREAERCLNCDVQTVFADKLCIECDACVD 510 Query: 181 ICPMDCISFTENGEEDDLRQRLKAPSPHHDQALYVSGDLKTGRVMVKDEDVCLHCGLCAE 240 ICPMDCI+FTE+GEED+LR RLKAP+ + +Q LY SG L TGR+MVKDEDVCLHCGLCAE Sbjct: 511 ICPMDCITFTEDGEEDELRGRLKAPALNPEQDLYASGRLGTGRIMVKDEDVCLHCGLCAE 570 Query: 241 RCPTGAWDMQKYLIDMVQAGSTCQSK 266 RCPTGAWDMQK+ ++ QA C+S+ Sbjct: 571 RCPTGAWDMQKFYLETTQAEGACRSR 596 >ref|YP_003167797.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV35868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 614 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/271 (70%), Positives = 217/271 (80%) Query: 1 VPSGEPDETVPCDDVLVAVGQENAFPWIEADCGIEFDKWHMPKVDPKTFVSTNPKVFFGG 60 VP+GEPD PCD VLVAVGQ+NAFPWIE D GIEFDKW +PK+D KT ST P VFFGG Sbjct: 339 VPTGEPDAHFPCDVVLVAVGQDNAFPWIERDIGIEFDKWGLPKLDAKTMQSTLPNVFFGG 398 Query: 61 DAAFGPKNIIWAVAHGHDAALSIHRMLSGEDINERPLPEVHVSSQKMGIHEWSYDNDISA 120 DAAFGPKNIIWAVAHGH+AA+SI R+L+GE+I RP P + SQKMGIH W YDN IS Sbjct: 399 DAAFGPKNIIWAVAHGHEAAVSIDRLLNGEEIATRPDPMTTLISQKMGIHAWRYDNAISV 458 Query: 121 DKRFKVPHRDKVVALKDIRAEVELGYDLKLALGEAQRCLNCDVQTVFSAPLCIECDACVD 180 D+R +VP RD ALK+I+ EVELG+D +LA EAQRCLNCDVQTVF+ LCIECDAC+D Sbjct: 459 DRRLRVPLRDIGAALKNIKIEVELGFDPQLAFKEAQRCLNCDVQTVFAPKLCIECDACMD 518 Query: 181 ICPMDCISFTENGEEDDLRQRLKAPSPHHDQALYVSGDLKTGRVMVKDEDVCLHCGLCAE 240 ICPMDCISFT N EED+LR RL+AP+ + Q LYVS LKTGRVMVKDEDVCLHCGLCAE Sbjct: 519 ICPMDCISFTGNAEEDELRPRLRAPALNTSQDLYVSEILKTGRVMVKDEDVCLHCGLCAE 578 Query: 241 RCPTGAWDMQKYLIDMVQAGSTCQSKARSAA 271 RCPTGAWDMQK+L+ M AG C+ A+ Sbjct: 579 RCPTGAWDMQKFLLAMTHAGPACRGGGTQAS 609