BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0003.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobiu... 394 e-108 ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp.... 390 e-106 ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketogl... 383 e-104 ref|YP_004154766.1| glutamate synthase (nadph) [Variovorax parad... 344 1e-92 ref|YP_002947340.1| Glutamate synthase (NADPH) [Variovorax parad... 341 8e-92 >ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC52007.1| blr6742 [Bradyrhizobium japonicum USDA 110] Length = 599 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/214 (87%), Positives = 201/214 (93%) Query: 1 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEDNPVAICRLKRVAADFKD 60 LIA+GRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVE+ PVAICRLKRVAADFKD Sbjct: 34 LIAQGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEETPVAICRLKRVAADFKD 93 Query: 61 DIKHRLPKPGPKNGKRIALVGGGPASLTVARDLAPLGYHCTVFDGDPKAGGMMRSQIPKF 120 DI RLP+P PKNGKR+ALVGGGPASLTVARDLAPLGYHCTVFD DP+AGGMMRSQIPKF Sbjct: 94 DITQRLPRPSPKNGKRVALVGGGPASLTVARDLAPLGYHCTVFDADPEAGGMMRSQIPKF 153 Query: 121 RLPDSVIDEETDYILGLGVEFRGGQRVDSLKQLLAENYDAIFVGSGAPRGRELDIPGRKE 180 RLP+SVIDEET YIL LGVEF+GG R++S+K LL E YDAIFVGSGAPRGRELDIPGRKE Sbjct: 154 RLPNSVIDEETGYILNLGVEFKGGHRIESMKALLTEKYDAIFVGSGAPRGRELDIPGRKE 213 Query: 181 AAANIHIGIEWLANVSFGHVDKIGRRVIVLGGGQ 214 AAANIHIGI+WL++VSFGH DKIG+RVIVLGGG Sbjct: 214 AAANIHIGIDWLSSVSFGHTDKIGKRVIVLGGGN 247 >ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] gb|ABQ38225.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] Length = 599 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/214 (85%), Positives = 202/214 (94%) Query: 1 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEDNPVAICRLKRVAADFKD 60 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVE++PVAICRLKRVAADFKD Sbjct: 34 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEESPVAICRLKRVAADFKD 93 Query: 61 DIKHRLPKPGPKNGKRIALVGGGPASLTVARDLAPLGYHCTVFDGDPKAGGMMRSQIPKF 120 D++ R+P+P PKN +RIALVGGGPASLTVARDLAPLGYHCTVFD DP+ GGMMRSQIPKF Sbjct: 94 DVQQRMPRPAPKNSRRIALVGGGPASLTVARDLAPLGYHCTVFDADPRPGGMMRSQIPKF 153 Query: 121 RLPDSVIDEETDYILGLGVEFRGGQRVDSLKQLLAENYDAIFVGSGAPRGRELDIPGRKE 180 RLPDSVIDEET Y+L LGV+++ G R+DSLK+LLAENYDAIF+GSGAPRGREL+IPGRKE Sbjct: 154 RLPDSVIDEETGYVLSLGVDYKAGHRIDSLKKLLAENYDAIFIGSGAPRGRELNIPGRKE 213 Query: 181 AAANIHIGIEWLANVSFGHVDKIGRRVIVLGGGQ 214 AAANIH+GI+WL+ VSFGH DKIG+RVIVLGGG Sbjct: 214 AAANIHLGIDWLSGVSFGHTDKIGKRVIVLGGGN 247 >ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketoglutarate NADP oxidoreductase subunit gamma (korC-like) [Bradyrhizobium sp. ORS 278] emb|CAL79466.1| putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (korC-like) [Bradyrhizobium sp. ORS 278] Length = 599 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/214 (83%), Positives = 200/214 (93%) Query: 1 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEDNPVAICRLKRVAADFKD 60 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVE++PVAICRLKRVAADFKD Sbjct: 34 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEESPVAICRLKRVAADFKD 93 Query: 61 DIKHRLPKPGPKNGKRIALVGGGPASLTVARDLAPLGYHCTVFDGDPKAGGMMRSQIPKF 120 D++ R+P+P KNG RIALVGGGPASLTVARDLAPLGYHCTVFD DPK GGMMRSQIPKF Sbjct: 94 DVQQRMPRPVAKNGCRIALVGGGPASLTVARDLAPLGYHCTVFDADPKPGGMMRSQIPKF 153 Query: 121 RLPDSVIDEETDYILGLGVEFRGGQRVDSLKQLLAENYDAIFVGSGAPRGRELDIPGRKE 180 RLPDSVIDEET Y+L LGV+++ G R+DSLK LL++NYDA+F+GSGAPRGREL+IPGRKE Sbjct: 154 RLPDSVIDEETGYVLSLGVDYKAGHRIDSLKALLSDNYDAVFIGSGAPRGRELNIPGRKE 213 Query: 181 AAANIHIGIEWLANVSFGHVDKIGRRVIVLGGGQ 214 AA NIH+GI+WL++VSFGH DKIG+RVIVLGGG Sbjct: 214 AAGNIHLGIDWLSSVSFGHTDKIGKRVIVLGGGN 247 >ref|YP_004154766.1| glutamate synthase (nadph) [Variovorax paradoxus EPS] gb|ADU36655.1| Glutamate synthase (NADPH) [Variovorax paradoxus EPS] Length = 599 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 163/220 (74%), Positives = 191/220 (86%), Gaps = 6/220 (2%) Query: 1 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEDN------PVAICRLKRV 54 +IA+ RY DAYMINW SNVFPGILGRTCDRPCEPACRRGRVE++ PVAICRLKRV Sbjct: 34 MIAQRRYGDAYMINWASNVFPGILGRTCDRPCEPACRRGRVEESNASAPEPVAICRLKRV 93 Query: 55 AADFKDDIKHRLPKPGPKNGKRIALVGGGPASLTVARDLAPLGYHCTVFDGDPKAGGMMR 114 AAD K+D++ R+PKP KNGKR+A +G GPASLTVARDLAPLGY TVFDG+ KAGG +R Sbjct: 94 AADMKEDVRERMPKPEAKNGKRVACIGAGPASLTVARDLAPLGYEVTVFDGEAKAGGFIR 153 Query: 115 SQIPKFRLPDSVIDEETDYILGLGVEFRGGQRVDSLKQLLAENYDAIFVGSGAPRGRELD 174 +QIP+FRLP+SVIDEET Y+L LGVEFRGG+R+DS+K L+ + +DAIFVG GAPRGR+LD Sbjct: 154 TQIPRFRLPESVIDEETGYVLDLGVEFRGGERIDSMKALMGQGWDAIFVGCGAPRGRDLD 213 Query: 175 IPGRKEAAANIHIGIEWLANVSFGHVDKIGRRVIVLGGGQ 214 +PGRKEAAA+IHIGI+WL +VSFGH+ IGRRVIVLGGG Sbjct: 214 VPGRKEAAASIHIGIDWLNSVSFGHITSIGRRVIVLGGGN 253 >ref|YP_002947340.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110] gb|ACS22074.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110] Length = 599 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 166/220 (75%), Positives = 189/220 (85%), Gaps = 6/220 (2%) Query: 1 LIAEGRYSDAYMINWKSNVFPGILGRTCDRPCEPACRRGRVEDN------PVAICRLKRV 54 +IA+ RY DAYM+NW SNVFPGILGRTCDRPCEPACRRGRVE + PVAICRLKRV Sbjct: 34 MIAQRRYGDAYMVNWVSNVFPGILGRTCDRPCEPACRRGRVEQSNEKIPEPVAICRLKRV 93 Query: 55 AADFKDDIKHRLPKPGPKNGKRIALVGGGPASLTVARDLAPLGYHCTVFDGDPKAGGMMR 114 AAD K+D++ R+PKP P NGKRIA VG GPASLTVARDLAPLGY TVFD + KAGG +R Sbjct: 94 AADMKEDVRARMPKPAPGNGKRIACVGAGPASLTVARDLAPLGYEVTVFDEEAKAGGFIR 153 Query: 115 SQIPKFRLPDSVIDEETDYILGLGVEFRGGQRVDSLKQLLAENYDAIFVGSGAPRGRELD 174 +QIP+FRLP+SVIDEET YIL LGVEFRGG+R+ S+K L+AE +DAIFVG GAPRGR+LD Sbjct: 154 TQIPRFRLPESVIDEETGYILDLGVEFRGGERIGSMKALMAEGWDAIFVGCGAPRGRDLD 213 Query: 175 IPGRKEAAANIHIGIEWLANVSFGHVDKIGRRVIVLGGGQ 214 IPGR+EAAA IHIGI+WL +VSFGHV +IGRRVIVLGGG Sbjct: 214 IPGRREAAAAIHIGIDWLNSVSFGHVSRIGRRVIVLGGGN 253