BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0011.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772315.1| ABC transporter substrate-binding protein [Brad... 644 0.0 ref|YP_001241213.1| high-affinity branched-chain amino acid ABC ... 636 e-180 ref|YP_001204894.1| high-affinity branched-chain amino acid ABC ... 632 e-179 ref|YP_531499.1| extracellular ligand-binding receptor [Rhodopse... 611 e-173 ref|YP_780576.1| extracellular ligand-binding receptor [Rhodopse... 603 e-170 >ref|NP_772315.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50940.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 372 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/366 (83%), Positives = 335/366 (91%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MKSLKLIG A GASI L +AA A+++TIAVAGP+TG ESAFGRQMKNGAEMAV IN +G Sbjct: 1 MKSLKLIGLAFGASIALSSAAFAQDVTIAVAGPMTGTESAFGRQMKNGAEMAVADINTAG 60 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 G+ GKKLAL++EDDACDPKQARS+AEK+A A+IPFVAGH+CSSSSIPASEAYADG VLQI Sbjct: 61 GINGKKLALNVEDDACDPKQARSIAEKIAGAKIPFVAGHYCSSSSIPASEAYADGNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNVARVCGRDDQQG +AAQYIAK + GKNIAILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLIAAQYIAKNYKGKNIAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKALNKAG+ EKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQE+GLILRQMRDQG Sbjct: 181 TKKALNKAGITEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQESGLILRQMRDQG 240 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LKTVLM+GDALADKEYASITG AG GTLFTFGPDPR K TA IVD F+AKNIDPEGYTL Sbjct: 241 LKTVLMAGDALADKEYASITGPAGEGTLFTFGPDPRNKPTAKKIVDAFKAKNIDPEGYTL 300 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRWDD 360 YTYAA+QVW+QAA K GT D K+VM+ +KAG WDTVIG ++YDAKGDIKQ+DYVVY+WD Sbjct: 301 YTYAAMQVWSQAAKKAGTTDAKKVMEAMKAGKWDTVIGPIEYDAKGDIKQIDYVVYKWDA 360 Query: 361 KGGYSE 366 KGGY+E Sbjct: 361 KGGYAE 366 >ref|YP_001241213.1| high-affinity branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37307.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 372 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 305/366 (83%), Positives = 331/366 (90%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK LKLIG ALGAS+ L TAA AE+ITIAVAGP+TGGESAFGRQM+NGAEMA+ +NA+G Sbjct: 1 MKPLKLIGLALGASLALSTAAYAEDITIAVAGPMTGGESAFGRQMQNGAEMAIADLNAAG 60 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 GVLGKKLAL + DDACDPKQARSVAEK+A + IPFVAGHFCSSSSIPASEAYAD VLQI Sbjct: 61 GVLGKKLALQVGDDACDPKQARSVAEKLAGSGIPFVAGHFCSSSSIPASEAYADSNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNVARVCGRDDQQG VAA YIAK F GKNIAILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAANYIAKNFKGKNIAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKALNKAGV EKM+ESYNKGDKDFNAIVSRLKR+NIDLVYVGGYHQEAGLILRQMRDQG Sbjct: 181 TKKALNKAGVTEKMFESYNKGDKDFNAIVSRLKRENIDLVYVGGYHQEAGLILRQMRDQG 240 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LKT+LM+GDA+ DKE+ASITG A GTLFTFGP+PR K TA AIVDKF+AKNIDPEGYTL Sbjct: 241 LKTILMAGDAMNDKEFASITGPAAEGTLFTFGPEPRNKPTAKAIVDKFKAKNIDPEGYTL 300 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRWDD 360 YTYAA+QVW+QA K T D K+VMDTIKAG WDTV+G L +DAKGDIKQ+DYVVY+WD Sbjct: 301 YTYAAIQVWSQAVKKANTTDAKKVMDTIKAGEWDTVLGKLGFDAKGDIKQIDYVVYKWDA 360 Query: 361 KGGYSE 366 KGGY+E Sbjct: 361 KGGYAE 366 >ref|YP_001204894.1| high-affinity branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL76657.1| high-affinity branched-chain amino acid ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 372 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 303/366 (82%), Positives = 331/366 (90%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK LKLIG ALGA++ L TAA AE+ITIAVAGP+TGGESAFGRQM+NGAEMA+ +NA+G Sbjct: 1 MKPLKLIGLALGATLALSTAAYAEDITIAVAGPMTGGESAFGRQMQNGAEMAIADLNAAG 60 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 GVLGKKLAL + DDACDPKQARSVAEK+A + IPFVAGHFCSSSSIPASEAYAD VLQI Sbjct: 61 GVLGKKLALQVGDDACDPKQARSVAEKLAGSGIPFVAGHFCSSSSIPASEAYADSNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNVARVCGRDDQQG VAA YIAK F GKNIAILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAANYIAKNFKGKNIAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKALNKAGV EKM+ESYNKGDKDFNAIVSRLKR+NIDLVYVGGYHQEAGLILRQMRDQG Sbjct: 181 TKKALNKAGVTEKMFESYNKGDKDFNAIVSRLKRENIDLVYVGGYHQEAGLILRQMRDQG 240 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LKT+LM+GDA+ DKE+ASITG A GTLFTFGP+PR K TA AIV+KF+AKNIDPEGYTL Sbjct: 241 LKTILMAGDAMNDKEFASITGPAAEGTLFTFGPEPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRWDD 360 YTYAA+QVW+QA K T D K+VMDTIKAG WDTV+G L +DAKGDIKQ+DYVVY+WD Sbjct: 301 YTYAAIQVWSQAVKKANTTDAKKVMDTIKAGEWDTVLGKLGFDAKGDIKQIDYVVYKWDA 360 Query: 361 KGGYSE 366 KGGY+E Sbjct: 361 KGGYAE 366 >ref|YP_531499.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] gb|ABD87180.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] Length = 371 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 288/369 (78%), Positives = 323/369 (87%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK LKLIG A GAS+ L T ALA++IT+AVAGP+TG ESAFGRQ++NGAE AV +NA+G Sbjct: 1 MKPLKLIGLAFGASLALSTTALAQDITVAVAGPMTGSESAFGRQLQNGAEQAVVDLNAAG 60 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 GVLGKKLAL + DD CDPKQARSVAEK+A ++IPFVAGHFCSSSSIPASEAYA+G VLQI Sbjct: 61 GVLGKKLALQVGDDGCDPKQARSVAEKIAGSKIPFVAGHFCSSSSIPASEAYAEGNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TP STNPLFTERKLWNV RVCGRDDQQG VAA YI K + GKN+AILNDKTTYGKGLADE Sbjct: 121 TPGSTNPLFTERKLWNVLRVCGRDDQQGLVAADYIVKNYKGKNVAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKALNKAG E M+ESYNKGDKDFN+IVSRLKR+NIDLV+VGGYHQEAGLILRQMRDQG Sbjct: 181 TKKALNKAGFTEAMFESYNKGDKDFNSIVSRLKRENIDLVFVGGYHQEAGLILRQMRDQG 240 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 LKTVLM+GDA+ D+E+ASITG GTLFTFGPDPR K TA AIV+KF+AKNIDPEGYTL Sbjct: 241 LKTVLMAGDAMNDREFASITGPLAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRWDD 360 YTYAA Q+W++AA K GT DPK+VM IKAG WDTV+G L +DAKGDIK +DYVVY+WD Sbjct: 301 YTYAAFQIWSEAAKKAGTTDPKKVMAAIKAGEWDTVLGKLSFDAKGDIKLIDYVVYKWDA 360 Query: 361 KGGYSETNP 369 KG Y+E NP Sbjct: 361 KGNYAEINP 369 >ref|YP_780576.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ05596.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 373 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/369 (77%), Positives = 321/369 (86%) Query: 1 MKSLKLIGFALGASIVLFTAALAEEITIAVAGPITGGESAFGRQMKNGAEMAVEQINASG 60 MK LKLI A GAS++L T ALA++I++AVAGP+TG ESAFGRQM NGAE AV +NA+G Sbjct: 1 MKPLKLISLAFGASLLLSTTALAQDISVAVAGPMTGSESAFGRQMANGAEQAVVDLNAAG 60 Query: 61 GVLGKKLALDIEDDACDPKQARSVAEKVAAARIPFVAGHFCSSSSIPASEAYADGGVLQI 120 GVLGKKLAL DD CDPKQARS+AEK++ + FVAGHFCSSSSIPASEAYADG VLQI Sbjct: 61 GVLGKKLALQTGDDGCDPKQARSIAEKLSNGKTQFVAGHFCSSSSIPASEAYADGNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGQVAAQYIAKQFNGKNIAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNV R+CGRDDQQG VAA YIAK F GKN+AILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVLRICGRDDQQGLVAADYIAKNFKGKNVAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGVIEKMYESYNKGDKDFNAIVSRLKRDNIDLVYVGGYHQEAGLILRQMRDQG 240 TKKALNKAG E M+ESYNKGDKDFN+IVSRLKRDNIDLVY+GGYHQEAGLILRQMRDQG Sbjct: 181 TKKALNKAGFKETMFESYNKGDKDFNSIVSRLKRDNIDLVYIGGYHQEAGLILRQMRDQG 240 Query: 241 LKTVLMSGDALADKEYASITGAAGAGTLFTFGPDPRKKTTAAAIVDKFRAKNIDPEGYTL 300 L+TV+M+GDA+ D+E+ASITG GTLFTFGPDPR K TA AIV+KF+AKNIDPEGYTL Sbjct: 241 LQTVMMAGDAMNDREFASITGPLAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAVQVWTQAATKVGTVDPKQVMDTIKAGSWDTVIGTLQYDAKGDIKQLDYVVYRWDD 360 YTYAA QVW+QAATK G+ +PK+V+ IKAG WDTV+G L +DAKGDIK +DYVVY+WD Sbjct: 301 YTYAAFQVWSQAATKAGSTEPKKVIAAIKAGEWDTVLGKLSFDAKGDIKLIDYVVYKWDA 360 Query: 361 KGGYSETNP 369 KG Y+E NP Sbjct: 361 KGNYAEINP 369