BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0010.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767199.1| MFS permease [Bradyrhizobium japonicum USDA 110... 431 e-119 ref|YP_001202493.1| major facilitator superfamily permease [Brad... 396 e-108 ref|YP_001236478.1| major facilitator superfamily permease [Brad... 394 e-107 ref|YP_483741.1| hypothetical protein RPB_0118 [Rhodopseudomonas... 381 e-104 ref|YP_004106466.1| hypothetical protein Rpdx1_0089 [Rhodopseudo... 379 e-103 >ref|NP_767199.1| MFS permease [Bradyrhizobium japonicum USDA 110] dbj|BAC45824.1| MFS permease [Bradyrhizobium japonicum USDA 110] Length = 562 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/277 (76%), Positives = 238/277 (85%) Query: 1 VVGALNITELRKRLSGEAAIRACALSMGAAMAAVALSHEPVLTAAALVLAGAVWMMVWAV 60 V+GALNI ELRKR+SGE+AIRAC +SM AMAA+A+S EPVLTA ALVLAGAVWM A+ Sbjct: 280 VIGALNIHELRKRMSGESAIRACTISMAFAMAALAVSTEPVLTATALVLAGAVWMAAVAL 339 Query: 61 FNIGVQLSAPRWVAGRSLAAYQAASSGGIAVGSWGWGRLTDAAGVETALLVSAALMLASP 120 FNIGVQLSAPRWVAGRSLAA+QA+ SGGIA+G+WGWG LTD AGVE ALLV+A LML SP Sbjct: 340 FNIGVQLSAPRWVAGRSLAAFQASISGGIAIGAWGWGHLTDYAGVEVALLVAAGLMLISP 399 Query: 121 LIGRWLPMPRIGARGEEPXPLADPEVRLALTGRSGPLVVEIEYRVAQENARAFHSVMQDV 180 L+G WL MPR+GAR E+ LADPEVRL+LTGRSGPLVVEIEYRV+QENARAFH+VMQDV Sbjct: 400 LLGIWLTMPRVGARNEDAEVLADPEVRLSLTGRSGPLVVEIEYRVSQENARAFHNVMQDV 459 Query: 181 QLSRQRNGAYGWSIARDIADPEMWTERYHCPTWLDYLRWRNRSTRSERILEQRAIHFHVG 240 QLSRQRNGAYGWSIARDIADPE+WTERYHCPTW DYLR RNRST SER L Q+AI FH+G Sbjct: 460 QLSRQRNGAYGWSIARDIADPELWTERYHCPTWFDYLRQRNRSTLSERALHQQAIDFHIG 519 Query: 241 PAPIRVRRMLERPFGSVHSNDDATEYAAGEMRGEIAT 277 P P+RVRRMLERPFGSV ++ + A E+ +AT Sbjct: 520 PEPVRVRRMLERPFGSVRWKEETPDQGASEVLPVVAT 556 >ref|YP_001202493.1| major facilitator superfamily permease [Bradyrhizobium sp. ORS 278] emb|CAL74243.1| putative permease of the major facilitator superfamily (MFS) transporter [Bradyrhizobium sp. ORS 278] Length = 560 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/267 (79%), Positives = 236/267 (88%) Query: 1 VVGALNITELRKRLSGEAAIRACALSMGAAMAAVALSHEPVLTAAALVLAGAVWMMVWAV 60 VVGALNI E+RKRLSGEAAIR CAL++GAA AAVALS EPVLTAAALV+AGAVWM+ A+ Sbjct: 280 VVGALNIGEIRKRLSGEAAIRTCALTLGAATAAVALSTEPVLTAAALVVAGAVWMLAVAL 339 Query: 61 FNIGVQLSAPRWVAGRSLAAYQAASSGGIAVGSWGWGRLTDAAGVETALLVSAALMLASP 120 FNIGVQLSAPRWVAGR+LAA+QAA SGGIA+GSWGWGRLTDAAGVE ALLVSAALM+ SP Sbjct: 340 FNIGVQLSAPRWVAGRALAAFQAAISGGIAIGSWGWGRLTDAAGVEVALLVSAALMVVSP 399 Query: 121 LIGRWLPMPRIGARGEEPXPLADPEVRLALTGRSGPLVVEIEYRVAQENARAFHSVMQDV 180 L+G WL MP +GAR E+ LADPEV+L LT RSGPLVVEIEYRVAQ++ARAFH +MQDV Sbjct: 400 LLGLWLRMPPVGARNEDGETLADPEVQLELTPRSGPLVVEIEYRVAQDDARAFHDLMQDV 459 Query: 181 QLSRQRNGAYGWSIARDIADPEMWTERYHCPTWLDYLRWRNRSTRSERILEQRAIHFHVG 240 QLSRQRNGAYGWSIARDIADPE+WTERYHCPTW+DYLR RNR+TR+ER L +RAI FH+G Sbjct: 460 QLSRQRNGAYGWSIARDIADPELWTERYHCPTWIDYLRQRNRATRAERELHKRAIDFHIG 519 Query: 241 PAPIRVRRMLERPFGSVHSNDDATEYA 267 P+R+RRMLERPFGSV S DD A Sbjct: 520 ADPVRIRRMLERPFGSVRSRDDIDRTA 546 >ref|YP_001236478.1| major facilitator superfamily permease [Bradyrhizobium sp. BTAi1] gb|ABQ32572.1| putative permease of the major facilitator superfamily (MFS) transporter [Bradyrhizobium sp. BTAi1] Length = 560 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/267 (78%), Positives = 234/267 (87%) Query: 1 VVGALNITELRKRLSGEAAIRACALSMGAAMAAVALSHEPVLTAAALVLAGAVWMMVWAV 60 VVGALNI E+RKRLSGEAAIR+CAL++GAA AAV LS EPVLTAAALV+AGAVWM+ A+ Sbjct: 280 VVGALNIGEIRKRLSGEAAIRSCALTLGAATAAVGLSGEPVLTAAALVVAGAVWMLAVAL 339 Query: 61 FNIGVQLSAPRWVAGRSLAAYQAASSGGIAVGSWGWGRLTDAAGVETALLVSAALMLASP 120 FNIGVQLSAPRWVAGR+LAA+QAA SGGIA+GSWGWG LTDAAGVE ALLVS ALM+ SP Sbjct: 340 FNIGVQLSAPRWVAGRALAAFQAAISGGIAIGSWGWGHLTDAAGVEVALLVSGALMMVSP 399 Query: 121 LIGRWLPMPRIGARGEEPXPLADPEVRLALTGRSGPLVVEIEYRVAQENARAFHSVMQDV 180 L+G WL MP IGAR E+ LADPEV+L LT RSGPLVVEIEYRVA+++ARAFH +MQDV Sbjct: 400 LLGLWLRMPPIGARNEDGETLADPEVQLELTSRSGPLVVEIEYRVAEDDARAFHDLMQDV 459 Query: 181 QLSRQRNGAYGWSIARDIADPEMWTERYHCPTWLDYLRWRNRSTRSERILEQRAIHFHVG 240 QLSRQRNGAYGWSIARDIADPE+WTERYHCPTW+DYLR RNR+TR+ER L QRAI FH+G Sbjct: 460 QLSRQRNGAYGWSIARDIADPELWTERYHCPTWIDYLRQRNRATRAERELHQRAIGFHIG 519 Query: 241 PAPIRVRRMLERPFGSVHSNDDATEYA 267 P P+R+RRMLERPFGSV DD A Sbjct: 520 PDPVRIRRMLERPFGSVRPKDDVDRTA 546 >ref|YP_483741.1| hypothetical protein RPB_0118 [Rhodopseudomonas palustris HaA2] gb|ABD04830.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 562 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/269 (70%), Positives = 222/269 (82%) Query: 1 VVGALNITELRKRLSGEAAIRACALSMGAAMAAVALSHEPVLTAAALVLAGAVWMMVWAV 60 V+GAL + +R+R+S EAAIR+CAL MG AMAAVA+S +LTAAALV+AGAVWM+ A+ Sbjct: 280 VIGALYVGMVRERMSSEAAIRSCALIMGVAMAAVAMSRWSILTAAALVIAGAVWMLAIAL 339 Query: 61 FNIGVQLSAPRWVAGRSLAAYQAASSGGIAVGSWGWGRLTDAAGVETALLVSAALMLASP 120 FNIGVQLSAPRWVAGRSLAA+QA+ +GGIA+GSWGWG + D +GV ++L+SA M+ SP Sbjct: 340 FNIGVQLSAPRWVAGRSLAAFQASIAGGIAIGSWGWGHVADLSGVAPSMLISAGAMVVSP 399 Query: 121 LIGRWLPMPRIGARGEEPXPLADPEVRLALTGRSGPLVVEIEYRVAQENARAFHSVMQDV 180 L+G WL MP +G + E+ LADPEVRLALT RSGPLVVEIEYRV ++ARAFH VMQ V Sbjct: 400 LLGLWLRMPAVGTQIEDADLLADPEVRLALTPRSGPLVVEIEYRVDPDDARAFHGVMQQV 459 Query: 181 QLSRQRNGAYGWSIARDIADPEMWTERYHCPTWLDYLRWRNRSTRSERILEQRAIHFHVG 240 QLSRQRNGAYGWSIARDIADPE+WTERYHCPTWLDYLR RNRST+ +R L QRA+ FH G Sbjct: 460 QLSRQRNGAYGWSIARDIADPELWTERYHCPTWLDYLRQRNRSTQDDRNLHQRAMAFHRG 519 Query: 241 PAPIRVRRMLERPFGSVHSNDDATEYAAG 269 PIRVRRMLERPFGSV DD+ + A G Sbjct: 520 ADPIRVRRMLERPFGSVRWKDDSPDRATG 548 >ref|YP_004106466.1| hypothetical protein Rpdx1_0089 [Rhodopseudomonas palustris DX-1] gb|ADU41733.1| protein of unknown function DUF894 DitE [Rhodopseudomonas palustris DX-1] Length = 561 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/271 (67%), Positives = 224/271 (82%) Query: 1 VVGALNITELRKRLSGEAAIRACALSMGAAMAAVALSHEPVLTAAALVLAGAVWMMVWAV 60 V+GALN+ R+R+S EAA+R CAL MG AMA +A+S P+LTAAALV+AGAVWM+ A+ Sbjct: 280 VIGALNVGIARQRMSSEAAVRLCALIMGVAMAVIAISRSPLLTAAALVIAGAVWMLAIAL 339 Query: 61 FNIGVQLSAPRWVAGRSLAAYQAASSGGIAVGSWGWGRLTDAAGVETALLVSAALMLASP 120 FNIGVQLSAPRWVAGRSLAA+QA+ SGGIA+GSWGWG + D +GV ++L+S MLASP Sbjct: 340 FNIGVQLSAPRWVAGRSLAAFQASISGGIAIGSWGWGHVADLSGVAPSMLLSGLAMLASP 399 Query: 121 LIGRWLPMPRIGARGEEPXPLADPEVRLALTGRSGPLVVEIEYRVAQENARAFHSVMQDV 180 ++ LPMP +G R E+ LADPEV+LALT RSGP+V+EIEYRV + ARAFH++MQ+V Sbjct: 400 VLAFLLPMPPVGPRAEDAELLADPEVKLALTPRSGPVVIEIEYRVDADQARAFHNLMQEV 459 Query: 181 QLSRQRNGAYGWSIARDIADPEMWTERYHCPTWLDYLRWRNRSTRSERILEQRAIHFHVG 240 QLSRQRNGAYGWSIARDIADPE+WTERYHCPTWLDYLR R+RST+ +RIL +RAI H G Sbjct: 460 QLSRQRNGAYGWSIARDIADPELWTERYHCPTWLDYLRQRSRSTQDDRILHRRAIALHRG 519 Query: 241 PAPIRVRRMLERPFGSVHSNDDATEYAAGEM 271 P PIRVRRMLERPFGSV +++ + AA E+ Sbjct: 520 PEPIRVRRMLERPFGSVRWKEESPDRAATEV 550