BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0008.p (564 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767199.1| MFS permease [Bradyrhizobium japonicum USDA 110... 854 0.0 ref|YP_778999.1| hypothetical protein RPE_0058 [Rhodopseudomonas... 812 0.0 ref|YP_001202493.1| major facilitator superfamily permease [Brad... 796 0.0 ref|YP_483741.1| hypothetical protein RPB_0118 [Rhodopseudomonas... 790 0.0 ref|YP_001236478.1| major facilitator superfamily permease [Brad... 789 0.0 >ref|NP_767199.1| MFS permease [Bradyrhizobium japonicum USDA 110] dbj|BAC45824.1| MFS permease [Bradyrhizobium japonicum USDA 110] Length = 562 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/564 (78%), Positives = 500/564 (88%), Gaps = 2/564 (0%) Query: 1 MTDSPQAQTRSADGITAPLRHATFRRIWLASLLSNVGILIQGVGAAWAMTQMTSSADKVA 60 MT+ P Q +ADGI APLR+ FRRIWLASLLSN+G+LIQGVGAAWAMTQM +SADKVA Sbjct: 1 MTEQPNRQRIAADGIAAPLRYTVFRRIWLASLLSNLGLLIQGVGAAWAMTQMAASADKVA 60 Query: 61 LVQTALLLPVMLISMPAGAIADMYDRRIVALVSIGLALAGATGLTVIAWLGLATPNLLLM 120 LVQTAL+LP+MLISMPAGAIADMYDRRIV LVS+ +AL GAT LT++A L L TP LL Sbjct: 61 LVQTALMLPIMLISMPAGAIADMYDRRIVTLVSLMIALTGATALTILAGLKLITPEALLA 120 Query: 121 LCLVVGSGMALMGPAWQSSVSEQVPLEAQLPAAIALNGISYNIARSIGPAIGGVVVATAG 180 C VVGSG AL GPAWQSSVSEQVP EA LP+A+ALNGISYNIARS GPA+GGV+VA G Sbjct: 121 FCFVVGSGNALFGPAWQSSVSEQVPPEA-LPSAVALNGISYNIARSFGPAVGGVIVAALG 179 Query: 181 AVAAFALNTLLYVPLIIALLLWKRISAPSRLPPERLSRAMVSGVRYISNSPSIKIVLIRS 240 AVAAFA N +LY+PL++ LLLW+R + PSRLP E+L+RAMVSG RYI+NSP IKIVL+R+ Sbjct: 180 AVAAFACNAILYLPLLVVLLLWRRSTEPSRLPREKLNRAMVSGFRYITNSPPIKIVLLRT 239 Query: 241 LVTGIIGGAITALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNISEIRSRLSGEAAI 300 LV G+IGGAI ALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNI E+R R+SGE+AI Sbjct: 240 LVMGLIGGAIMALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNIHELRKRMSGESAI 299 Query: 301 RVCALTMGAAIAAVAVSKQPVITAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAA 360 R C ++M A+AA+AVS +PV+TA ALV+AGAVWM A+ALFNIGVQLSAPRWVAGRSLAA Sbjct: 300 RACTISMAFAMAALAVSTEPVLTATALVLAGAVWMAAVALFNIGVQLSAPRWVAGRSLAA 359 Query: 361 FQAAIAGGIAIGSWCWGRITDAGGVEMALLISAGLMLLSPLLGIWLRMPPIGARNEDATD 420 FQA+I+GGIAIG+W WG +TD GVE+ALL++AGLML+SPLLGIWL MP +GARNEDA + Sbjct: 360 FQASISGGIAIGAWGWGHLTDYAGVEVALLVAAGLMLISPLLGIWLTMPRVGARNEDA-E 418 Query: 421 ALADPEVRLQLSGRSGPLVVEIEYRVAQDNARAFHNVMQDVQLSRQRNGAYGWSIARDIA 480 LADPEVRL L+GRSGPLVVEIEYRV+Q+NARAFHNVMQDVQLSRQRNGAYGWSIARDIA Sbjct: 419 VLADPEVRLSLTGRSGPLVVEIEYRVSQENARAFHNVMQDVQLSRQRNGAYGWSIARDIA 478 Query: 481 DPELWTERYHCPTWLDFLRQRNRATQIERELHQKAADFHIGAEPIRVRRMLERPFGSVRW 540 DPELWTERYHCPTW D+LRQRNR+T ER LHQ+A DFHIG EP+RVRRMLERPFGSVRW Sbjct: 479 DPELWTERYHCPTWFDYLRQRNRSTLSERALHQQAIDFHIGPEPVRVRRMLERPFGSVRW 538 Query: 541 KDETPDRAAKEVIPVVATAAGSST 564 K+ETPD+ A EV+PVVATAAGSST Sbjct: 539 KEETPDQGASEVLPVVATAAGSST 562 >ref|YP_778999.1| hypothetical protein RPE_0058 [Rhodopseudomonas palustris BisA53] gb|ABJ04019.1| protein of unknown function DUF894, DitE [Rhodopseudomonas palustris BisA53] Length = 560 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/564 (73%), Positives = 482/564 (85%), Gaps = 4/564 (0%) Query: 1 MTDSPQAQTRSADGITAPLRHATFRRIWLASLLSNVGILIQGVGAAWAMTQMTSSADKVA 60 M ++P+ +ADG+TAPLRH FRRIWLASLLSN+G++IQGVGAAWAMTQM SSADKVA Sbjct: 1 MDEAPKRSLFAADGVTAPLRHTIFRRIWLASLLSNLGLMIQGVGAAWAMTQMASSADKVA 60 Query: 61 LVQTALLLPVMLISMPAGAIADMYDRRIVALVSIGLALAGATGLTVIAWLGLATPNLLLM 120 LVQTAL+LP+ML SMPAGAIADMYDRRIVAL S+ LAL+G+T L V+A++G P+ LL Sbjct: 61 LVQTALMLPIMLFSMPAGAIADMYDRRIVALASLMLALSGSTALAVLAFVGAINPDTLLA 120 Query: 121 LCLVVGSGMALMGPAWQSSVSEQVPLEAQLPAAIALNGISYNIARSIGPAIGGVVVATAG 180 C VVGSGMAL GPAWQSSVSEQVP A LP+A+ALNGISYNIARS GPAIGG+VVATAG Sbjct: 121 FCFVVGSGMALFGPAWQSSVSEQVP-AATLPSAVALNGISYNIARSFGPAIGGIVVATAG 179 Query: 181 AVAAFALNTLLYVPLIIALLLWKRISAPSRLPPERLSRAMVSGVRYISNSPSIKIVLIRS 240 +VAAFA N LY+PL+I L LWKR+ PSRLP E+L+RA+VSGVRYI+NSPSI+IVLIR+ Sbjct: 180 SVAAFAANAALYLPLLIVLFLWKRVHEPSRLPREKLNRAIVSGVRYIANSPSIRIVLIRT 239 Query: 241 LVTGIIGGAITALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNISEIRSRLSGEAAI 300 LVTGI GG++ ALMPLVARDLL GGAQTYG+MLGAFGMGAV+GAL I E+R RL E A+ Sbjct: 240 LVTGIAGGSVLALMPLVARDLLKGGAQTYGLMLGAFGMGAVLGALGIGEVRKRLGVEGAV 299 Query: 301 RVCALTMGAAIAAVAVSKQPVITAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAA 360 R A + AIA +A+SK PV+TAAALVV GAVWMLAIALFNIGVQLSAPRWVAGR+LAA Sbjct: 300 RGGAAVLAVAIAVIAISKLPVVTAAALVVGGAVWMLAIALFNIGVQLSAPRWVAGRALAA 359 Query: 361 FQAAIAGGIAIGSWCWGRITDAGGVEMALLISAGLMLLSPLLGIWLRMPPIGARNEDATD 420 FQA+IAGGIAIGSW WG + D GVE ALL+SA ML S LG+WLRMP +G ++EDA + Sbjct: 360 FQASIAGGIAIGSWGWGALADHLGVEAALLVSAATMLGSAGLGLWLRMPEVGGQSEDA-E 418 Query: 421 ALADPEVRLQLSGRSGPLVVEIEYRVAQDNARAFHNVMQDVQLSRQRNGAYGWSIARDIA 480 ALADPEVRL L+GRSGP+VVEIEY++ QD+ARAFH VMQ VQL+RQRNGAYGWSIARDIA Sbjct: 419 ALADPEVRLMLTGRSGPVVVEIEYKIRQDDARAFHQVMQQVQLTRQRNGAYGWSIARDIA 478 Query: 481 DPELWTERYHCPTWLDFLRQRNRATQIERELHQKAADFHIGAEPIRVRRMLERPFGSVRW 540 DPE+W ERYHCPTWLDFLRQR+R TQ ER L+Q+A FH G EPIRVRR+LERPFGSVRW Sbjct: 479 DPEMWMERYHCPTWLDFLRQRSRTTQAERALYQRAFAFHSGEEPIRVRRLLERPFGSVRW 538 Query: 541 KDETPDRAAKEVIPVVATAAGSST 564 KD+TPDRA EV+PV ++ GSS+ Sbjct: 539 KDDTPDRAGSEVLPV--SSIGSSS 560 >ref|YP_001202493.1| major facilitator superfamily permease [Bradyrhizobium sp. ORS 278] emb|CAL74243.1| putative permease of the major facilitator superfamily (MFS) transporter [Bradyrhizobium sp. ORS 278] Length = 560 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/562 (78%), Positives = 506/562 (90%), Gaps = 4/562 (0%) Query: 1 MTDSPQAQTRSADGITAPLRHATFRRIWLASLLSNVGILIQGVGAAWAMTQMTSSADKVA 60 MT + + +A+ I APL+H FRRIWLASLLSN+G+LIQ VG+AWAMTQMT+SADKVA Sbjct: 1 MTAPQKRELFAAESIAAPLKHTVFRRIWLASLLSNLGLLIQAVGSAWAMTQMTASADKVA 60 Query: 61 LVQTALLLPVMLISMPAGAIADMYDRRIVALVSIGLALAGATGLTVIAWLGLATPNLLLM 120 LVQTAL+LPVM ISMPAGA+ADMYDRRIVALVS+ +AL GAT LTV+AWLGL TP LL Sbjct: 61 LVQTALMLPVMFISMPAGAVADMYDRRIVALVSLAVALGGATTLTVLAWLGLVTPERLLA 120 Query: 121 LCLVVGSGMALMGPAWQSSVSEQVPLEAQLPAAIALNGISYNIARSIGPAIGGVVVATAG 180 LC V+GSGMALMGPAWQSSVSEQVP E LPAA+ALNGISYNIARS GPAIGGVVVA AG Sbjct: 121 LCFVIGSGMALMGPAWQSSVSEQVPPET-LPAAVALNGISYNIARSFGPAIGGVVVAAAG 179 Query: 181 AVAAFALNTLLYVPLIIALLLWKRISAPSRLPPERLSRAMVSGVRYISNSPSIKIVLIRS 240 AVAAFA N LLY+PL+ AL LW+R+ PSRLP E L+RA+VSGVRYI +SPSI+IVLIR+ Sbjct: 180 AVAAFAANALLYLPLLAALFLWRRVVEPSRLPREPLNRAIVSGVRYIIHSPSIRIVLIRT 239 Query: 241 LVTGIIGGAITALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNISEIRSRLSGEAAI 300 LVTG+IGG+I+ALMPLVARDLLHGGAQTYGIMLGAFGMGAV+GALNI EIR RLSGEAAI Sbjct: 240 LVTGLIGGSISALMPLVARDLLHGGAQTYGIMLGAFGMGAVVGALNIGEIRKRLSGEAAI 299 Query: 301 RVCALTMGAAIAAVAVSKQPVITAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAA 360 R CALT+GAA AAVA+S +PV+TAAALVVAGAVWMLA+ALFNIGVQLSAPRWVAGR+LAA Sbjct: 300 RTCALTLGAATAAVALSTEPVLTAAALVVAGAVWMLAVALFNIGVQLSAPRWVAGRALAA 359 Query: 361 FQAAIAGGIAIGSWCWGRITDAGGVEMALLISAGLMLLSPLLGIWLRMPPIGARNEDATD 420 FQAAI+GGIAIGSW WGR+TDA GVE+ALL+SA LM++SPLLG+WLRMPP+GARNED + Sbjct: 360 FQAAISGGIAIGSWGWGRLTDAAGVEVALLVSAALMVVSPLLGLWLRMPPVGARNEDG-E 418 Query: 421 ALADPEVRLQLSGRSGPLVVEIEYRVAQDNARAFHNVMQDVQLSRQRNGAYGWSIARDIA 480 LADPEV+L+L+ RSGPLVVEIEYRVAQD+ARAFH++MQDVQLSRQRNGAYGWSIARDIA Sbjct: 419 TLADPEVQLELTPRSGPLVVEIEYRVAQDDARAFHDLMQDVQLSRQRNGAYGWSIARDIA 478 Query: 481 DPELWTERYHCPTWLDFLRQRNRATQIERELHQKAADFHIGAEPIRVRRMLERPFGSVRW 540 DPELWTERYHCPTW+D+LRQRNRAT+ ERELH++A DFHIGA+P+R+RRMLERPFGSVR Sbjct: 479 DPELWTERYHCPTWIDYLRQRNRATRAERELHKRAIDFHIGADPVRIRRMLERPFGSVRS 538 Query: 541 KDETPDRAAKEVIPVVATAAGS 562 +D+ DR A++ P VA+AA S Sbjct: 539 RDDI-DRTAEQA-PAVASAARS 558 >ref|YP_483741.1| hypothetical protein RPB_0118 [Rhodopseudomonas palustris HaA2] gb|ABD04830.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 562 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/564 (73%), Positives = 484/564 (85%), Gaps = 3/564 (0%) Query: 1 MTDSPQAQTRSADGITAPLRHATFRRIWLASLLSNVGILIQGVGAAWAMTQMTSSADKVA 60 MT P+ SA G+ APLR+A FRRIWLASLLSN+G++I GVGAAWAMTQMTSSADKVA Sbjct: 1 MTGRPKRGAFSAGGVAAPLRYALFRRIWLASLLSNLGLMINGVGAAWAMTQMTSSADKVA 60 Query: 61 LVQTALLLPVMLISMPAGAIADMYDRRIVALVSIGLALAGATGLTVIAWLGLATPNLLLM 120 LVQTAL+LP+ML++MPAGAIADMYDRR+V L S+ L L GAT L V+A LGL TP +LL Sbjct: 61 LVQTALMLPIMLVAMPAGAIADMYDRRLVGLASLTLGLGGATALAVLAHLGLVTPEILLA 120 Query: 121 LCLVVGSGMALMGPAWQSSVSEQVPLEAQLPAAIALNGISYNIARSIGPAIGGVVVATAG 180 C V+G+GMAL GPAWQ+SVSEQVP EA LPAA+ALNGISYNIARS GPA+GG+VVA+AG Sbjct: 121 FCFVIGTGMALFGPAWQASVSEQVPGEA-LPAAVALNGISYNIARSFGPAVGGIVVASAG 179 Query: 181 AVAAFALNTLLYVPLIIALLLWKRISAPSRLPPERLSRAMVSGVRYISNSPSIKIVLIRS 240 AVAAFA N +LY+PL+ LLLW+R+S P RLPPERL+RA+V+GVRYI+NSPSI+IVL R+ Sbjct: 180 AVAAFAANAVLYLPLLAVLLLWRRVSEPPRLPPERLNRAIVTGVRYIANSPSIRIVLART 239 Query: 241 LVTGIIGGAITALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNISEIRSRLSGEAAI 300 L+TGI G ++ ALMPLVARDLL GA+TYGI+LGAFG+GAVIGAL + +R R+S EAAI Sbjct: 240 LITGIAGSSVLALMPLVARDLLKSGAETYGILLGAFGVGAVIGALYVGMVRERMSSEAAI 299 Query: 301 RVCALTMGAAIAAVAVSKQPVITAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAA 360 R CAL MG A+AAVA+S+ ++TAAALV+AGAVWMLAIALFNIGVQLSAPRWVAGRSLAA Sbjct: 300 RSCALIMGVAMAAVAMSRWSILTAAALVIAGAVWMLAIALFNIGVQLSAPRWVAGRSLAA 359 Query: 361 FQAAIAGGIAIGSWCWGRITDAGGVEMALLISAGLMLLSPLLGIWLRMPPIGARNEDATD 420 FQA+IAGGIAIGSW WG + D GV ++LISAG M++SPLLG+WLRMP +G + EDA D Sbjct: 360 FQASIAGGIAIGSWGWGHVADLSGVAPSMLISAGAMVVSPLLGLWLRMPAVGTQIEDA-D 418 Query: 421 ALADPEVRLQLSGRSGPLVVEIEYRVAQDNARAFHNVMQDVQLSRQRNGAYGWSIARDIA 480 LADPEVRL L+ RSGPLVVEIEYRV D+ARAFH VMQ VQLSRQRNGAYGWSIARDIA Sbjct: 419 LLADPEVRLALTPRSGPLVVEIEYRVDPDDARAFHGVMQQVQLSRQRNGAYGWSIARDIA 478 Query: 481 DPELWTERYHCPTWLDFLRQRNRATQIERELHQKAADFHIGAEPIRVRRMLERPFGSVRW 540 DPELWTERYHCPTWLD+LRQRNR+TQ +R LHQ+A FH GA+PIRVRRMLERPFGSVRW Sbjct: 479 DPELWTERYHCPTWLDYLRQRNRSTQDDRNLHQRAMAFHRGADPIRVRRMLERPFGSVRW 538 Query: 541 KDETPDRA-AKEVIPVVATAAGSS 563 KD++PDRA EV+PV + GS+ Sbjct: 539 KDDSPDRATGTEVLPVAGVSGGST 562 >ref|YP_001236478.1| major facilitator superfamily permease [Bradyrhizobium sp. BTAi1] gb|ABQ32572.1| putative permease of the major facilitator superfamily (MFS) transporter [Bradyrhizobium sp. BTAi1] Length = 560 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/561 (79%), Positives = 502/561 (89%), Gaps = 5/561 (0%) Query: 3 DSPQA-QTRSADGITAPLRHATFRRIWLASLLSNVGILIQGVGAAWAMTQMTSSADKVAL 61 ++PQ + +A+GI APLRH FRRIWLASLLSN+G+LIQ VGAAWAMTQMTSSADKVAL Sbjct: 2 NAPQKREPFAAEGIAAPLRHMVFRRIWLASLLSNLGLLIQAVGAAWAMTQMTSSADKVAL 61 Query: 62 VQTALLLPVMLISMPAGAIADMYDRRIVALVSIGLALAGATGLTVIAWLGLATPNLLLML 121 VQTAL+LPVM ISMPAGAIADMYDRRIVALVS+ +AL GA LTV+AWLGL TP LL L Sbjct: 62 VQTALMLPVMFISMPAGAIADMYDRRIVALVSLLVALGGAVTLTVLAWLGLVTPERLLAL 121 Query: 122 CLVVGSGMALMGPAWQSSVSEQVPLEAQLPAAIALNGISYNIARSIGPAIGGVVVATAGA 181 C V+GSGMALMGPAWQSSVSEQVP E LPAA+ALNGISYNIARS GPAIGGVVVA AGA Sbjct: 122 CFVIGSGMALMGPAWQSSVSEQVPPET-LPAAVALNGISYNIARSFGPAIGGVVVAAAGA 180 Query: 182 VAAFALNTLLYVPLIIALLLWKRISAPSRLPPERLSRAMVSGVRYISNSPSIKIVLIRSL 241 VAAFA N LLY+PL+ AL LW+R+ PSRLP E L+RA+VSGVRYI +SPSI+IVLIR+L Sbjct: 181 VAAFAANALLYLPLLAALFLWRRVVEPSRLPREPLNRAIVSGVRYIIHSPSIRIVLIRTL 240 Query: 242 VTGIIGGAITALMPLVARDLLHGGAQTYGIMLGAFGMGAVIGALNISEIRSRLSGEAAIR 301 VTG+IGG+I+ALMPLVARDLLHGGAQTYGIMLGAFGMGAV+GALNI EIR RLSGEAAIR Sbjct: 241 VTGVIGGSISALMPLVARDLLHGGAQTYGIMLGAFGMGAVVGALNIGEIRKRLSGEAAIR 300 Query: 302 VCALTMGAAIAAVAVSKQPVITAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAAF 361 CALT+GAA AAV +S +PV+TAAALVVAGAVWMLA+ALFNIGVQLSAPRWVAGR+LAAF Sbjct: 301 SCALTLGAATAAVGLSGEPVLTAAALVVAGAVWMLAVALFNIGVQLSAPRWVAGRALAAF 360 Query: 362 QAAIAGGIAIGSWCWGRITDAGGVEMALLISAGLMLLSPLLGIWLRMPPIGARNEDATDA 421 QAAI+GGIAIGSW WG +TDA GVE+ALL+S LM++SPLLG+WLRMPPIGARNED + Sbjct: 361 QAAISGGIAIGSWGWGHLTDAAGVEVALLVSGALMMVSPLLGLWLRMPPIGARNEDG-ET 419 Query: 422 LADPEVRLQLSGRSGPLVVEIEYRVAQDNARAFHNVMQDVQLSRQRNGAYGWSIARDIAD 481 LADPEV+L+L+ RSGPLVVEIEYRVA+D+ARAFH++MQDVQLSRQRNGAYGWSIARDIAD Sbjct: 420 LADPEVQLELTSRSGPLVVEIEYRVAEDDARAFHDLMQDVQLSRQRNGAYGWSIARDIAD 479 Query: 482 PELWTERYHCPTWLDFLRQRNRATQIERELHQKAADFHIGAEPIRVRRMLERPFGSVRWK 541 PELWTERYHCPTW+D+LRQRNRAT+ ERELHQ+A FHIG +P+R+RRMLERPFGSVR K Sbjct: 480 PELWTERYHCPTWIDYLRQRNRATRAERELHQRAIGFHIGPDPVRIRRMLERPFGSVRPK 539 Query: 542 DETPDRAAKEVIPVVATAAGS 562 D+ DR A++ P VATAA S Sbjct: 540 DDV-DRTAEQA-PAVATAARS 558