BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0006.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577509.1| hypothetical protein Nham_2257 [Nitrobacter ham... 290 5e-77 ref|YP_001206431.1| hypothetical protein BRADO4470 [Bradyrhizobi... 290 8e-77 ref|YP_532502.1| hypothetical protein RPC_2633 [Rhodopseudomonas... 290 9e-77 ref|YP_001240623.1| hypothetical protein BBta_4689 [Bradyrhizobi... 290 9e-77 ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium ja... 289 1e-76 >ref|YP_577509.1| hypothetical protein Nham_2257 [Nitrobacter hamburgensis X14] gb|ABE63049.1| protein of unknown function DUF88 [Nitrobacter hamburgensis X14] Length = 206 Score = 290 bits (743), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/175 (78%), Positives = 156/175 (89%) Query: 6 KLAIFIDGPNLHATCKALGFEIDYKRLLEEYRRAGRLLRAFYYTATAEDQEYSSIRPLID 65 K+A+FIDG NL+AT K LGF+IDYKRLL+E++ G L+RAFYYTA EDQEYSSIRPLID Sbjct: 7 KIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSIRPLID 66 Query: 66 WLDYNGYTVVTKATKEFLDASGRRKVKGNMNIELAVDAMELAGHIDQMILFSGDGDLRSL 125 WLDYNGYTVVTKATKEF+DASGRRKVKGNM+IELAVDAMELA H+DQ++LFSGDGD RSL Sbjct: 67 WLDYNGYTVVTKATKEFVDASGRRKVKGNMDIELAVDAMELAEHVDQIVLFSGDGDFRSL 126 Query: 126 VEAVQRRGVSVTVISTNTIQPPMIEDELRRQADDFIELAQLKPKLGRDPTERLGP 180 VEAVQRRGV VTV+ST + QPPMI DELRRQAD F +L +L+PKLGRDP+ER P Sbjct: 127 VEAVQRRGVRVTVVSTISSQPPMIADELRRQADVFTDLVELQPKLGRDPSERSAP 181 >ref|YP_001206431.1| hypothetical protein BRADO4470 [Bradyrhizobium sp. ORS 278] emb|CAL78210.1| conserved hypothetical protein with DNA-binding domain (DUF88) [Bradyrhizobium sp. ORS 278] Length = 216 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 140/179 (78%), Positives = 156/179 (87%) Query: 2 SRFEKLAIFIDGPNLHATCKALGFEIDYKRLLEEYRRAGRLLRAFYYTATAEDQEYSSIR 61 S K+A+FIDG NL+AT K LGF+IDYKRLL+E++ G LLRAFYYTA EDQEYSSIR Sbjct: 3 SSTNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSIR 62 Query: 62 PLIDWLDYNGYTVVTKATKEFLDASGRRKVKGNMNIELAVDAMELAGHIDQMILFSGDGD 121 PLIDWLDYNGYTVVTKATKEF+DASGRRKVKGNM+IELAVDAMELA HIDQM+LFSGDGD Sbjct: 63 PLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGD 122 Query: 122 LRSLVEAVQRRGVSVTVISTNTIQPPMIEDELRRQADDFIELAQLKPKLGRDPTERLGP 180 RSLVEA+QRRGV VTVIST + QPPMI DELRRQAD F +L +L+ KLGRDP+ER P Sbjct: 123 FRSLVEAMQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAP 181 >ref|YP_532502.1| hypothetical protein RPC_2633 [Rhodopseudomonas palustris BisB18] gb|ABD88183.1| protein of unknown function DUF88 [Rhodopseudomonas palustris BisB18] Length = 208 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 139/175 (79%), Positives = 154/175 (88%) Query: 6 KLAIFIDGPNLHATCKALGFEIDYKRLLEEYRRAGRLLRAFYYTATAEDQEYSSIRPLID 65 K+A+FIDG NL+AT K LGF+IDYKRLL+E++ G L+RAFYYTA EDQEYSSIRPLID Sbjct: 7 KIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSIRPLID 66 Query: 66 WLDYNGYTVVTKATKEFLDASGRRKVKGNMNIELAVDAMELAGHIDQMILFSGDGDLRSL 125 WLDYNGYTVVTKATKEF+DASGRRKVKGNM+IELAVDAMELA HIDQM+LFSGDGD RSL Sbjct: 67 WLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGDFRSL 126 Query: 126 VEAVQRRGVSVTVISTNTIQPPMIEDELRRQADDFIELAQLKPKLGRDPTERLGP 180 VEAVQRRGV VTVIST + QPPMI DELRRQAD F +L +L+ KLGRDP ER P Sbjct: 127 VEAVQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKLGRDPAERPAP 181 >ref|YP_001240623.1| hypothetical protein BBta_4689 [Bradyrhizobium sp. BTAi1] gb|ABQ36717.1| hypothetical protein BBta_4689 [Bradyrhizobium sp. BTAi1] Length = 217 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 140/179 (78%), Positives = 156/179 (87%) Query: 2 SRFEKLAIFIDGPNLHATCKALGFEIDYKRLLEEYRRAGRLLRAFYYTATAEDQEYSSIR 61 S K+A+FIDG NL+AT K LGF+IDYKRLL+E++ G LLRAFYYTA EDQEYSSIR Sbjct: 3 SSTNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSIR 62 Query: 62 PLIDWLDYNGYTVVTKATKEFLDASGRRKVKGNMNIELAVDAMELAGHIDQMILFSGDGD 121 PLIDWLDYNGYTVVTKATKEF+DASGRRKVKGNM+IELAVDAMELA HIDQM+LFSGDGD Sbjct: 63 PLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGD 122 Query: 122 LRSLVEAVQRRGVSVTVISTNTIQPPMIEDELRRQADDFIELAQLKPKLGRDPTERLGP 180 RSLVEA+QRRGV VTVIST + QPPMI DELRRQAD F +L +L+ KLGRDP+ER P Sbjct: 123 FRSLVEAMQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAP 181 >ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium japonicum USDA 110] dbj|BAC50332.1| blr5067 [Bradyrhizobium japonicum USDA 110] Length = 214 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 142/184 (77%), Positives = 159/184 (86%), Gaps = 1/184 (0%) Query: 6 KLAIFIDGPNLHATCKALGFEIDYKRLLEEYRRAGRLLRAFYYTATAEDQEYSSIRPLID 65 K+A+FIDG NL+AT K LGF+IDYKRLL+E++ G LLRAFYYTA EDQEYSSIRPLID Sbjct: 8 KIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSIRPLID 67 Query: 66 WLDYNGYTVVTKATKEFLDASGRRKVKGNMNIELAVDAMELAGHIDQMILFSGDGDLRSL 125 WLDYNGYTVVTKATKEF+DASGRRKVKGNM+IELAVDAMELA HIDQM+LFSGDGD RSL Sbjct: 68 WLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGDFRSL 127 Query: 126 VEAVQRRGVSVTVISTNTIQPPMIEDELRRQADDFIELAQLKPKLGRDPTERLGPATGAG 185 VEAVQRRGV VTV+ST QPPMI DELRRQAD F +L +L+ KLGRDP+ER P G Sbjct: 128 VEAVQRRGVRVTVVSTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAP-RDRG 186 Query: 186 KRES 189 +RE+ Sbjct: 187 EREA 190