BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0059.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242964.1| hypothetical protein BBta_7178 [Bradyrhizobi... 466 e-129 ref|YP_001832161.1| hypothetical protein Bind_1029 [Beijerinckia... 381 e-103 ref|YP_002362461.1| hypothetical protein Msil_2161 [Methylocella... 369 e-100 ref|YP_002979128.1| UbiA prenyltransferase [Rhizobium leguminosa... 329 7e-88 ref|YP_470911.1| integral membrane prenyltransferase [Rhizobium ... 315 1e-83 >ref|YP_001242964.1| hypothetical protein BBta_7178 [Bradyrhizobium sp. BTAi1] gb|ABQ39058.1| putative prenyltransferase integral membrane protein [Bradyrhizobium sp. BTAi1] Length = 475 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 274/474 (57%), Positives = 337/474 (71%), Gaps = 7/474 (1%) Query: 5 VPERVEQGGGDA--VRDPLRSKARPLVVDVDEVMVRGSSVPADLVFDLI--RRLRAFAVA 60 +P + G GDA +RD RPLVVDVD+V+++ +S+ ++ ++ I R A A+A Sbjct: 3 LPYQDTTGPGDAGPLRDARLRGGRPLVVDVDDVLMQ-TSLSSEAIWSEIAHRPAAAIALA 61 Query: 61 ITAFFGPQAQSTRGADPSGFDLSRAQFDHDAVRFLLQVLGEGRPVYLCSETHPEPFVSAV 120 GP R A+ + FD +R +D + V ++L+VLGEGRPVYL S+T+ V A+ Sbjct: 62 AAVLRGPAELKRRLANSAHFDPARLAYDTETVAYMLRVLGEGRPVYLASDTYDSALVGAI 121 Query: 121 AQHLGVFTAWAAAPERQLPAARREELPPVLRQGFDYIGSAAVALPASASRLARPARSEPP 180 AQHLGVFTAW A+ + L QGFDY+G + LPA A+R+ R + + P Sbjct: 122 AQHLGVFTAWTASADGARLDPEALSLLQSWSQGFDYLGHDSEVLPAGATRIPRRSPAAPS 181 Query: 181 APAQ--VGMRSWLKLFRVHQYAKNALVLVPLLTAHKFASGSAATSLLAVIAFSLCASGAY 238 VG R W KL RVHQ+AKNALVLVPLLTAH+F A T+L A +AFSL AS AY Sbjct: 182 VATSDPVGWRVWAKLLRVHQWAKNALVLVPLLTAHQFGLWPAITALFAALAFSLGASAAY 241 Query: 239 ILNDLLDVEADRAHPTKRGRPIASGAIPASRAVGAMALALVAAFAIALSISIEFGGVLLG 298 ILNDL+DV ADRAH TKR RPIASGAI ++A+ AMAL L+ A IA +S F GVL G Sbjct: 242 ILNDLVDVSADRAHATKRERPIASGAIAPAQAIAAMALLLIGAITIAAVVSPAFLGVLAG 301 Query: 299 YFALTTSYSFWLKRIATVDVVVLATLYTVRVIGGAVAISVPMSEWLLAFSLFIFMSLALV 358 Y ALTT+YSF LKR+A +DVV LA LYT+RV+ GAVAI V MSEWL AFSLFIFM+LALV Sbjct: 302 YLALTTAYSFRLKRLALLDVVTLAVLYTIRVVAGAVAIGVAMSEWLFAFSLFIFMALALV 361 Query: 359 KRYIELASQPDGAVLAARGYQVEDKSMIAILAAASGFNAVVIFTLYISSDTVRALYSHPQ 418 KRY+EL + G +R YQ D++MIA+LAAA+GFNAVVIFTLYISSD VRALY HPQ Sbjct: 362 KRYVELDRRSSGDRPLSRDYQPNDRAMIAVLAAAAGFNAVVIFTLYISSDAVRALYGHPQ 421 Query: 419 LLWVGCPILMYWIGRVMLFAQRGLIDDDPVIFALRDRVSWVALGAIGAIMLAAI 472 ++W CP+LMYW+ RVMLFAQRGLIDDDPVIFAL+DRVSW+ALG IGAIMLAA+ Sbjct: 422 IMWASCPVLMYWVARVMLFAQRGLIDDDPVIFALKDRVSWLALGTIGAIMLAAM 475 >ref|YP_001832161.1| hypothetical protein Bind_1029 [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB94672.1| UbiA prenyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 485 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/479 (46%), Positives = 295/479 (61%), Gaps = 33/479 (6%) Query: 19 DPLRSKARPLVVDVDEVMVRGSSVPADLVFD-LIRR-----LRAFAVAITAFFGPQAQST 72 D + ++ RPLVVD+D G+ + +DL+ + L RR L AF + F G Sbjct: 12 DRVSAQNRPLVVDLD-----GTLINSDLLVEGLFRRIGKAPLAAFPLLRALFKGKAYFKH 66 Query: 73 RGADPSGFDLSRAQFDHDAVRFLLQVLGEGRPVYLCSETHPEPFVSAVAQHLGVFTAWAA 132 A+ D + ++ ++ + + EGRPVYL S ++ E V AVA HLGVFT W Sbjct: 67 VIAETDSLDPATLPYNETVLKIVEKARAEGRPVYLASASN-ERLVGAVADHLGVFTGWFG 125 Query: 133 APERQLPAARREE---LPPVLRQGFDYIGSAAVALPASASRLARPARSEPPAPAQVGM-- 187 + ++ + + QGFDYIG+ V LP A+ A+ PP+ Q + Sbjct: 126 SNATLNSSSHNKAGLLVEKFGNQGFDYIGNDKVDLPVWAAA-AKGMAVRPPSRLQSRLAT 184 Query: 188 -------------RSWLKLFRVHQYAKNALVLVPLLTAHKFASGSAATSLLAVIAFSLCA 234 +SWLKLFR+HQYAKNALV +PLLTAHKF S +L A AFSLCA Sbjct: 185 DHIEIVENNKPRLKSWLKLFRIHQYAKNALVFLPLLTAHKFDLFSFFLALQAFFAFSLCA 244 Query: 235 SGAYILNDLLDVEADRAHPTKRGRPIASGAIPASRAVGAMALALVAAFAIALSISIEFGG 294 S Y+LNDL+D+EADR HPTKR RP ASG IP + ++ L L+ + +A + S F G Sbjct: 245 SSVYVLNDLVDIEADRQHPTKRKRPFASGTIPIVQGALSIPLLLLVSLGLAAATSWSFLG 304 Query: 295 VLLGYFALTTSYSFWLKRIATVDVVVLATLYTVRVIGGAVAISVPMSEWLLAFSLFIFMS 354 VLL YFALT +Y+F LK +DVV LA LYT RVIGGA AI V +SEWLLAFS+F FMS Sbjct: 305 VLLAYFALTNAYTFSLKTKMLIDVVTLAMLYTSRVIGGAAAIDVGVSEWLLAFSMFFFMS 364 Query: 355 LALVKRYIELASQPDGAV--LAARGYQVEDKSMIAILAAASGFNAVVIFTLYISSDTVRA 412 LAL+KRYIELA + D ++ + R Y++ D ++A LA ASG NAV +F LYISSDTV Sbjct: 365 LALIKRYIELAVRIDASLPDPSNRNYKLSDADIVASLAGASGLNAVTVFALYISSDTVHT 424 Query: 413 LYSHPQLLWVGCPILMYWIGRVMLFAQRGLIDDDPVIFALRDRVSWVALGAIGAIMLAA 471 LY HP+LLW+ CPIL+YWI RV++ A R L++DDP+IFAL+DRVS + I IM+ A Sbjct: 425 LYRHPKLLWLVCPILLYWISRVLMMAHRRLVNDDPIIFALKDRVSLICGLLIALIMIVA 483 >ref|YP_002362461.1| hypothetical protein Msil_2161 [Methylocella silvestris BL2] gb|ACK51099.1| UbiA prenyltransferase [Methylocella silvestris BL2] Length = 484 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/468 (47%), Positives = 291/468 (62%), Gaps = 53/468 (11%) Query: 27 PLVVDVDEVMVRGSSVPADLVFDLIRRLRAFAVAI----TAFFGPQAQSTRG------AD 76 PLVVD+D G+ + +DL+ L +F + ++ FG A G A Sbjct: 20 PLVVDLD-----GTLIKSDLL------LESFFANVGKNPSSIFGLLAALRHGKARFKDAL 68 Query: 77 PSGFDLSRAQFDHDAVRFLLQVLG----EGRPVYLCSETHPEPFVSAVAQHLGVFTAWAA 132 G DL A +D + +L ++G EGRPVYL S ++ + FV AVA H+G+FT W A Sbjct: 69 AQGVDLDVASLPYD--QKVLDLIGAARNEGRPVYLASASNAK-FVGAVADHVGLFTGWFA 125 Query: 133 APERQLPAAR-REEL--PPVLRQGFDYIGSAAVALPASASRLAR------PARS------ 177 + +A + EL +GFDY+G+ LP A R PA S Sbjct: 126 SDASTNNSAHTKAELLVGKFGERGFDYVGNDKADLPVWAVAARRIGVRTAPALSGRLAAL 185 Query: 178 -----EPPAPAQVGMRSWLKLFRVHQYAKNALVLVPLLTAHKFASGSAATSLLAVIAFSL 232 E PAP ++SW+KL RVHQYAKN LV +PLL AHKF S +LA IAFSL Sbjct: 186 GVEVIESPAPE---LKSWIKLIRVHQYAKNGLVFLPLLAAHKFDLLSLYHCVLAAIAFSL 242 Query: 233 CASGAYILNDLLDVEADRAHPTKRGRPIASGAIPASRAVGAMALALVAAFAIALSISIEF 292 CAS YI NDL+D+ ADR HP+KR RP+ASGAIP R V AM + +A+ IA +S +F Sbjct: 243 CASSVYIFNDLVDLSADRGHPSKRRRPLASGAIPIMRGVLAMPVLFLASVVIAALVSWQF 302 Query: 293 GGVLLGYFALTTSYSFWLKRIATVDVVVLATLYTVRVIGGAVAISVPMSEWLLAFSLFIF 352 GVLL YFA+T +Y+ WLK +DVV LA LY++RVIGGAVAI+V SEWL+ FS+FIF Sbjct: 303 LGVLLFYFAVTNAYTCWLKTKMLIDVVALAALYSLRVIGGAVAINVVASEWLIGFSMFIF 362 Query: 353 MSLALVKRYIELASQPDGAV--LAARGYQVEDKSMIAILAAASGFNAVVIFTLYISSDTV 410 SLAL+KRYIELA + D + + R Y++ D ++A LAAASGFNAV +F LYISSD V Sbjct: 363 ASLALIKRYIELAVRLDKELPDPSNRNYKLGDMPIVAALAAASGFNAVTVFALYISSDAV 422 Query: 411 RALYSHPQLLWVGCPILMYWIGRVMLFAQRGLIDDDPVIFALRDRVSW 458 +LY HPQ LW+ CPILMYWI R+++ A R L+ DDP++FAL+DR+S+ Sbjct: 423 HSLYRHPQFLWLVCPILMYWISRMVMLAHRRLVHDDPIVFALKDRISY 470 >ref|YP_002979128.1| UbiA prenyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60577.1| UbiA prenyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 484 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 206/474 (43%), Positives = 281/474 (59%), Gaps = 33/474 (6%) Query: 26 RPLVVDVDEVMVRGSSVPADLVFDLIRRLRAFAVA---ITAFFGPQAQSTRGADPSGFDL 82 RPLV+D+D +VR S + + F +RR R F++ + G R + P+ FD Sbjct: 17 RPLVIDLDGTLVR-SDLLIETAFSELRR-RPFSIVDLVLATCRGKACLKHRLSIPADFDP 74 Query: 83 SRAQFDHDAVRFLLQVLGEGRPVYLCSETHPEPFVSAVAQHLGVFTAWAAAPERQLPAA- 141 + FD + + + EGR VYL S TH E VS ++ HLGVF W A E AA Sbjct: 75 AILPFDPEVLNLIHTARHEGRQVYLASATH-ERLVSRISDHLGVFNGWFATDEMTNCAAE 133 Query: 142 -RREELPPVLRQG-FDYIGSAAVALPA-----------SASRLARPARSEPPAPAQVGM- 187 + E+L G FDY+G+ A LP S++R+AR + + Sbjct: 134 VKAEKLVAAFSDGGFDYVGNDAADLPVWRHAGKAYAIRSSARVARQLSRQCDDVEHLAYD 193 Query: 188 ----RSWLKLFRVHQYAKNALVLVPLLTAHKFASGSAATSLLAVIAFSLCASGAYILNDL 243 R+W +L R HQY KN LV +PLLT F S A + LA+IAFSLCAS Y+LNDL Sbjct: 194 RPTWRTWARLLRAHQYVKNGLVFIPLLTNQLFDVHSLANAALALIAFSLCASSVYVLNDL 253 Query: 244 LDVEADRAHPTKRGRPIASGAIPASRAVGAMALALVAAFAIALSISIEFGGVLLGYFALT 303 +D++ DR H +K RP+A G IP S A+ A+ + L+ +F +AL+I+ F VL GYFALT Sbjct: 254 VDLQDDRGHRSKCRRPLACGEIPLSHALMAIPVLLLLSFMVALTITPAFILVLAGYFALT 313 Query: 304 TSYSFWLKRIATVDVVVLATLYTVRVIGGAVAISVPMSEWLLAFSLFIFMSLALVKRYIE 363 T+YSF LKR +DVV LA LYT RV+GG+ AISV S WLLAF + F+SLALVKRY E Sbjct: 314 TAYSFVLKRKMILDVVTLAALYTARVVGGSAAISVWPSPWLLAFMMSWFLSLALVKRYTE 373 Query: 364 LASQ-----PDGAVLAARGYQVEDKSMIAILAAASGFNAVVIFTLYISSDTVRALYSHPQ 418 L S+ PD +R Y+ D M+ LAA +G NA+ ++ LY +SD+V+ LY+ P Sbjct: 374 LISRRAANLPDS---KSRDYKNGDIGMVGALAAGAGMNALTLYALYAASDSVQDLYTRPG 430 Query: 419 LLWVGCPILMYWIGRVMLFAQRGLIDDDPVIFALRDRVSWVALGAIGAIMLAAI 472 +LW+ PIL WI R++L A RGL+ DDPV+FA++D+VS LG A ++AA+ Sbjct: 431 ILWLAGPILACWIARILLLAHRGLMHDDPVVFAIKDKVSLATLGVASAFVVAAL 484 >ref|YP_470911.1| integral membrane prenyltransferase [Rhizobium etli CFN 42] gb|ABC92184.1| putative integral membrane prenyltransferase protein [Rhizobium etli CFN 42] Length = 583 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 198/474 (41%), Positives = 269/474 (56%), Gaps = 33/474 (6%) Query: 26 RPLVVDVDEVMVRGSSVPADLVFDLIRR---LRAFAVAITAFFGPQAQSTRGADPSGFDL 82 RPLVVD+D +VR + +L RR + F +++A G + P FD Sbjct: 116 RPLVVDLDGTLVRSDLLIETAFSELSRRPLSIVDFVRSLSA--GKACLKHHLSQPEDFDP 173 Query: 83 SRAQFDHDAVRFLLQVLGEGRPVYLCSETHPEPFVSAVAQHLGVFTAWAAAPERQLPAAR 142 + +D + ++ + EGR VYL S +H E V VA HLG+FT W A E A Sbjct: 174 AILPYDAEVLKVIKAAREEGRSVYLASASH-ERLVCTVADHLGLFTGWFATNETMNCVAE 232 Query: 143 REELPPVL---RQGFDYIGSAAVALP---------------ASASRLARPARS-EPPAPA 183 + V GFDYIG+ L A A L+R + E Sbjct: 233 VKAAKLVAAFGEGGFDYIGNDPADLSVWRHAAKSYAIRTSAAVARELSRQCDNVEHLRHD 292 Query: 184 QVGMRSWLKLFRVHQYAKNALVLVPLLTAHKFASGSAATSLLAVIAFSLCASGAYILNDL 243 + R W + RVHQY KN LV +PLLT F S A + LA++AFSLCASG Y+LNDL Sbjct: 293 KPTWRIWARSLRVHQYVKNGLVFIPLLTNQLFDLHSLANAGLALVAFSLCASGVYLLNDL 352 Query: 244 LDVEADRAHPTKRGRPIASGAIPASRAVGAMALALVAAFAIALSISIEFGGVLLGYFALT 303 +D++ DR H TK RP+A G IP A+ A+ + L + +A +S F VL GYFALT Sbjct: 353 IDLQDDRRHKTKCRRPLACGEIPLLHALLAIPILLFLSLTVAAMVSPVFVLVLAGYFALT 412 Query: 304 TSYSFWLKRIATVDVVVLATLYTVRVIGGAVAISVPMSEWLLAFSLFIFMSLALVKRYIE 363 T+YSF+LKR +DVV LA+LYT RVIGGA A+SV S WLLAF + F+SLALVKRY E Sbjct: 413 TAYSFFLKRKMILDVVALASLYTTRVIGGAAAVSVWPSPWLLAFMMSWFLSLALVKRYTE 472 Query: 364 LASQ-----PDGAVLAARGYQVEDKSMIAILAAASGFNAVVIFTLYISSDTVRALYSHPQ 418 L S+ PD +R Y+ D M+ LAA +G NA+ +F LY +SD+ + +Y+ P Sbjct: 473 LISRRAAHLPDS---RSRDYRKADIGMVGALAAGAGMNALTLFALYAASDSAQDIYARPA 529 Query: 419 LLWVGCPILMYWIGRVMLFAQRGLIDDDPVIFALRDRVSWVALGAIGAIMLAAI 472 +LW+ PIL WI R+++ A RG + DDPV+FA++D+VS LG G +++AA+ Sbjct: 530 MLWLAGPILACWIARILMLAHRGQMHDDPVVFAIKDKVSLATLGIAGVLVIAAM 583