BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0055.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769386.1| transcriptional regulator [Bradyrhizobium japon... 214 2e-53 ref|YP_002501594.1| LuxR family transcriptional regulator [Methy... 166 3e-39 gb|AEH82512.1| transcriptional regulator [Sinorhizobium meliloti... 158 9e-37 ref|YP_004551039.1| regulatory protein LuxR [Sinorhizobium melil... 157 2e-36 ref|YP_001758114.1| LuxR family transcriptional regulator [Methy... 137 2e-30 >ref|NP_769386.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48011.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/290 (43%), Positives = 174/290 (60%), Gaps = 10/290 (3%) Query: 1 VPLMHAGVDVITDADLFESEAEMLRDPLYATLGEFGLKWFAAVGFHSGPALWALTIQRSP 60 VPL+ +G V+ D D+F SE +ML+ PLY LG+ G +W++A+ F +GPA+WAL +QR Sbjct: 86 VPLLLSGRKVLRDQDIFSSERDMLKTPLYRHLGQLGFQWWSAISFWAGPAMWALALQRKR 145 Query: 61 REGLFDADEIKALRRVSAPLTEAATLSAVVGRSALSGIASALDLIQVAAIAVGRFGTVIG 120 EG F+ D++KA +S LTEAATLS VGR L G SA D I A+++ G V+ Sbjct: 146 GEGAFEDDDLKAFALLSDALTEAATLSHAVGRQVLLGALSAFDSINEPALSMTGMGRVLE 205 Query: 121 MNSQAESCLGHDLAIRNNRLTLLDRQANADLTRLIDQLAHSSDLH------PLPSSPIVV 174 +N+ A D + NNRL + D +A TR +D +SD + IV Sbjct: 206 INAAAAEIFDADFRVHNNRLYMRDGKA----TRALDARLTNSDRELRLRAGSRIGNIIVA 261 Query: 175 RRIDKRPIVIQIQQVPPAARSPFLGARAILLIRDLEGSAAFDQALLAATFELTPAQARLA 234 RR KRPIVI++ VP AARSPFLGAR IL++ D+E + LL+A F LT A+A++A Sbjct: 262 RRETKRPIVIKLLPVPGAARSPFLGARFILMLTDMEVVRKSEIELLSAIFALTAAEAKVA 321 Query: 235 TRLARGDSVEAAAQEAGVALATARNQLKTIFQKNGTHRQAELVALLHRVK 284 +A G S E A + ++ T RNQ+K +F K THRQ EL AL+ ++ Sbjct: 322 RLIAAGWSPEMIADDLALSRETVRNQIKAVFSKTATHRQNELAALIGHMR 371 >ref|YP_002501594.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL61291.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 368 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/264 (40%), Positives = 155/264 (58%), Gaps = 2/264 (0%) Query: 22 EMLRDPLYATL-GEFGLKWFAAVGFHSGPALWALTIQRSPREGLFDADEIKALRRVSAPL 80 EM R P Y L GL+WFA VGF++G + WAL+IQR+ + G+FD + + L +SA L Sbjct: 100 EMRRAPFYTELLHPHGLQWFAGVGFYAGSSHWALSIQRTRQAGMFDRADKRQLAALSARL 159 Query: 81 TEAATLSAVVGRSALSGIASALDLIQVAAIAVGRFGTVIGMNSQAESCLGHDLAIRNNRL 140 TE ATLS GR AL G+ SA + AI + R G V+ +N+ A++ LG L++ N RL Sbjct: 160 TEVATLSDAAGRGALDGMRSAFSAVGQPAILLHRLGGVLDLNAAADALLGEHLSLVNRRL 219 Query: 141 TLLDRQANADLTRLIDQLAHSSDLHPLPSSPIVVRRIDKRPIVIQIQQVPPAARSPFLGA 200 D++ + L L + + PL P V R + PI++++ + AARSPF+GA Sbjct: 220 RAKDKRVSDHLDALGAAMRSRREGEPLDVPPFTVPRAGQHPIMVRVLAIDGAARSPFIGA 279 Query: 201 RAILLIRDLEGSAAFDQ-ALLAATFELTPAQARLATRLARGDSVEAAAQEAGVALATARN 259 A+LL+ DL L+ F L+PA+ARL + LA G+S+ A+ G+ TARN Sbjct: 280 EALLLLDDLRPQTLRRSVGLIRLAFGLSPAEARLVSLLAAGESLYDIAEATGITRETARN 339 Query: 260 QLKTIFQKNGTHRQAELVALLHRV 283 QLK+ K G RQ++LVAL+ R+ Sbjct: 340 QLKSAMAKTGMRRQSQLVALISRL 363 >gb|AEH82512.1| transcriptional regulator [Sinorhizobium meliloti SM11] Length = 359 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 8/277 (2%) Query: 10 VITDADLFESEAEMLRDPLYAT-LGEFGLKWFAAVGFHSGPALWALTIQRSPREGLFDAD 68 V TD DLF ++ ++ R P Y L L+WFA V SG +LW L+IQRS +G F D Sbjct: 88 VATDLDLFTAD-QIERHPYYQEFLAPHKLRWFAGVKVASGDSLWCLSIQRSIEQGPFSPD 146 Query: 69 EIKALRRVSAPLTEAATLSAVVGRSALSGIASALDLIQVAAIAVGRFGTVIGMNSQAESC 128 +++ L +S L A+ +S ++G S + A + A G V+ +N+ AE Sbjct: 147 QLETLADLSRRLASASAVSNMLGFSRVDAALDAYERSNTPAFVFDVSGNVLRLNASAEML 206 Query: 129 LGHDLAIRNNRLTLLDRQANADLTRLIDQLAHSSDLHPLPSSP--IVVRRIDKRPIVIQI 186 LG L I RLT DR A T+ ++ L H + P SP I++ R +RP++ + Sbjct: 207 LGDTLKITGRRLTSSDRNA----TQALETLLHEVIVRESPRSPGPILLPRPGRRPMLAYV 262 Query: 187 QQVPPAARSPFLGARAILLIRDLEGSAAFDQALLAATFELTPAQARLATRLARGDSVEAA 246 Q++P + SP +A+ ++ D E + + L A FELT A+A+LA +A G S+E Sbjct: 263 QKLPSVSYSPLAPGQAVAVVTDPEAACTPTLSALQACFELTVAEAKLAQNIALGKSLERI 322 Query: 247 AQEAGVALATARNQLKTIFQKNGTHRQAELVALLHRV 283 E G+A TARNQLK +F K TH Q +L +LL R+ Sbjct: 323 GHECGIAYDTARNQLKAVFAKTDTHSQCQLASLLSRL 359 >ref|YP_004551039.1| regulatory protein LuxR [Sinorhizobium meliloti AK83] gb|AEG56916.1| regulatory protein LuxR [Sinorhizobium meliloti AK83] Length = 361 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 8/277 (2%) Query: 10 VITDADLFESEAEMLRDPLYAT-LGEFGLKWFAAVGFHSGPALWALTIQRSPREGLFDAD 68 V TD DLF ++ ++ R P Y L L+WFA V SG +LW L+IQRS +G F D Sbjct: 90 VATDLDLFTAD-QIERHPYYQEFLAPHKLRWFAGVKVASGDSLWCLSIQRSIEQGPFSPD 148 Query: 69 EIKALRRVSAPLTEAATLSAVVGRSALSGIASALDLIQVAAIAVGRFGTVIGMNSQAESC 128 +++ L +S L A+ +S ++G S + A + A G V+ +N+ AE Sbjct: 149 QLETLADLSRRLASASAVSNMLGFSRVDAALDAYERSNTPAFVFDVSGNVLRLNASAEML 208 Query: 129 LGHDLAIRNNRLTLLDRQANADLTRLIDQLAHSSDLHPLPSSP--IVVRRIDKRPIVIQI 186 LG L I RLT DR A T+ ++ L H + P SP I++ R +RP++ + Sbjct: 209 LGDTLKITGRRLTSSDRNA----TQALETLLHEVIVRESPRSPGPILLPRPGRRPMLAYV 264 Query: 187 QQVPPAARSPFLGARAILLIRDLEGSAAFDQALLAATFELTPAQARLATRLARGDSVEAA 246 Q++P + SP +A+ ++ D E + + L A FELT A+A+LA +A G S+E Sbjct: 265 QKLPSVSYSPLAPGQAVAVVTDPEAARTPTLSALQACFELTVAEAKLAQNIALGKSLERI 324 Query: 247 AQEAGVALATARNQLKTIFQKNGTHRQAELVALLHRV 283 E G+A TARNQLK +F K TH Q +L +LL R+ Sbjct: 325 GHECGIAYDTARNQLKAVFAKTDTHSQCQLASLLSRL 361 >ref|YP_001758114.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB27431.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 367 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 147/282 (52%), Gaps = 11/282 (3%) Query: 1 VPLMHA-GVDVITDADLFESEAEMLRDPLYATL-GEFGLKWFAAVGFHSGPALWALTIQR 58 +PLM G+ V D F + E+ R P Y L GL+WFA +GF LW L++QR Sbjct: 90 IPLMRTRGIAVDQD---FTTPEEIARLPFYQDLLASRGLRWFAGIGFAVKGRLWCLSLQR 146 Query: 59 SPREGLFDADEIKALRRVSAPLTEAATLSAVVGRSALSGIASALDLIQVAAIAVGRFGTV 118 + +G ++ E + L +S L A L+++V R+ L+G+ A +LI AA+ + G Sbjct: 147 TVEQGPYEPHEQRRLATLSPLLQRAGLLTSMVERARLAGLTQAFELIDRAALILDAEGRA 206 Query: 119 IGMNSQAESCLGHDLAIRNNRLTLLDRQANADLTRLIDQLAHSSDLHPLPSSPIVVRRID 178 + N + LG DL + RLT D D R ++ LA P+ S +V R D Sbjct: 207 LRWNDAFGALLGRDLKLAGGRLTAED----PDAARQLEALARPFGRPPI--SAVVAARRD 260 Query: 179 KRPIVIQIQQVPPAARSPFLGARAILLIRDLEGSAAFDQALLAATFELTPAQARLATRLA 238 PIVI + + +R F GA +LL AA A+L A + LTPA+ARLA L+ Sbjct: 261 GPPIVIHVVPLVGPSRGLFAGASTLLLGSVPGTPAAPATAILQAAYRLTPAEARLAQALS 320 Query: 239 RGDSVEAAAQEAGVALATARNQLKTIFQKNGTHRQAELVALL 280 G S+ AA + ATAR+QLK IF K G RQ++LV L+ Sbjct: 321 SGTSLAEAASRFAITAATARSQLKAIFAKTGASRQSDLVRLV 362