BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0054.p         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001243285.1| hypothetical protein BBta_7529 [Bradyrhizobi...   162   2e-38
ref|YP_001202828.1| hypothetical protein BRADO0658 [Bradyrhizobi...   157   6e-37
ref|YP_575765.1| hypothetical protein Nham_0414 [Nitrobacter ham...   144   6e-33
ref|YP_782845.1| hypothetical protein RPE_3939 [Rhodopseudomonas...   141   5e-32
ref|YP_533669.1| hypothetical protein RPC_3816 [Rhodopseudomonas...   133   1e-29

>ref|YP_001243285.1| hypothetical protein BBta_7529 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39379.1| hypothetical protein BBta_7529 [Bradyrhizobium sp. BTAi1]
          Length = 231

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 88/120 (73%)

Query: 3   VMPSRSSTLAVAVYAVACVLAPMSAHAQWWRGGPKDFEDCADLAEKAKTREDKTAQLADC 62
           + P R   L  A  +    + P  A AQWW   P DFE+CAD AEK+ T+E+KTA LA C
Sbjct: 1   MYPPRLPILVFAALSCLPAIQPERAQAQWWSRAPSDFEECADAAEKSATKEEKTAALAQC 60

Query: 63  NAKFAGRRKPGGGYTYYDFMQDRSFDIAGPNPTPDEQKKIDQEYTGYLEQQRRSRIVAAF 122
           NAKFAGRRKPGGGY YYDFMQDRSFDIAGPNPTPDEQK IDQ+YT YLE+QR + + +A 
Sbjct: 61  NAKFAGRRKPGGGYVYYDFMQDRSFDIAGPNPTPDEQKFIDQQYTQYLERQRHANMSSAM 120


>ref|YP_001202828.1| hypothetical protein BRADO0658 [Bradyrhizobium sp. ORS 278]
 emb|CAL74588.1| Conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 216

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 80/95 (84%)

Query: 28  HAQWWRGGPKDFEDCADLAEKAKTREDKTAQLADCNAKFAGRRKPGGGYTYYDFMQDRSF 87
           HA+WW   P DFE+CAD AEK+ T+E+KTA +A CNAKFAGRRKPGGGY YYDFMQDRSF
Sbjct: 2   HAEWWSRSPADFEECADAAEKSATKEEKTAAMAQCNAKFAGRRKPGGGYVYYDFMQDRSF 61

Query: 88  DIAGPNPTPDEQKKIDQEYTGYLEQQRRSRIVAAF 122
           DIAGPNPTPDEQK IDQ+YT YLE+QR S + AA 
Sbjct: 62  DIAGPNPTPDEQKFIDQQYTQYLERQRHSNMSAAM 96


>ref|YP_575765.1| hypothetical protein Nham_0414 [Nitrobacter hamburgensis X14]
 gb|ABE61305.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 205

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 13  VAVYAVAC--VLAPMSAHAQWWRGGPKDFEDCADLAEK-AKTREDKTAQLADCNAKFAGR 69
           +A +A+AC  VLA   A+A WW   P DFE+CA   EK A + EDK  +L  C AKFAGR
Sbjct: 8   LAGFAIACGMVLASSHANAGWWSRTPADFEECAASVEKNATSAEDKGQRLTACEAKFAGR 67

Query: 70  RKPGGGYTYYDFMQDRSFDIAGPNPTPDEQKKIDQEYTGYLEQQRRSRIVAAFNAKQLEX 129
           R PGGGYTYYDFMQ+R FDIAGPNPT +EQK ID++Y  YL+ QRR  I AAF  KQ E 
Sbjct: 68  RNPGGGYTYYDFMQNRHFDIAGPNPTAEEQKHIDEQYAAYLKDQRRGIIAAAFFRKQQEV 127

Query: 130 S-ARSPARP 137
             AR+  +P
Sbjct: 128 EQARATVKP 136


>ref|YP_782845.1| hypothetical protein RPE_3939 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07865.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 227

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 88/130 (67%), Gaps = 8/130 (6%)

Query: 24  PMSAHAQWWRG-GPKDFEDCADLAEKAKTREDKTAQLADCNAKFAGRRKPGGGYTYYDFM 82
           PM A AQWW    P D+EDCA+ A++    + + + +A C +KFAGRRKPGGGY+YYDFM
Sbjct: 2   PMRAQAQWWSSREPADYEDCAERAQETSDAKQRDSLIAACESKFAGRRKPGGGYSYYDFM 61

Query: 83  QDRSFDIAGPNPTPDEQKKIDQEYTGYLEQQRRSRIVAAFNAKQLEXSARSPARPWCMVI 142
           QDR FDIAGPNPTP EQ++IDQ YT +L+Q RRS I AAF  KQ E +          +I
Sbjct: 62  QDRHFDIAGPNPTPQEQREIDQHYTAFLDQNRRSIIAAAFARKQRELTE-------AKLI 114

Query: 143 ATKNPSARSS 152
           A   P+A+ S
Sbjct: 115 AEAPPAAKPS 124


>ref|YP_533669.1| hypothetical protein RPC_3816 [Rhodopseudomonas palustris BisB18]
 gb|ABD89350.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 222

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 30  QWWRGGPKDFEDCADLAEKAKTREDKTAQLA-DCNAKFAGRRKPGGGYTYYDFMQDRSFD 88
           QWW   P DFEDCA+ AEK  + +   A L   C AKFAGRRKPGGGYTYYDFMQ++ FD
Sbjct: 27  QWWSRTPADFEDCAEHAEKTASSKQARADLVMQCEAKFAGRRKPGGGYTYYDFMQNKHFD 86

Query: 89  IAGPNPTPDEQKKIDQEYTGYLEQQRRSRIVAAFNAKQLEXS 130
           IAGPNPT +EQ++ DQ YT +L++QRRS I AAF  KQ E +
Sbjct: 87  IAGPNPTAEEQREFDQHYTAFLDEQRRSIIAAAFAQKQRELN 128