BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0035.p         (41 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002826837.1| putative transcriptional regulator, LysR fam...    48   5e-04
ref|YP_001351249.1| putative transcriptional regulator [Pseudomo...    44   0.008
ref|ZP_01368209.1| hypothetical protein PaerPA_01005365 [Pseudom...    44   0.010
ref|NP_253876.1| transcriptional regulator [Pseudomonas aerugino...    44   0.010
ref|ZP_06881521.1| putative transcriptional regulator [Pseudomon...    44   0.010

>ref|YP_002826837.1| putative transcriptional regulator, LysR family [Sinorhizobium
          fredii NGR234]
 gb|ACP26084.1| putative transcriptional regulator, LysR family [Sinorhizobium
          fredii NGR234]
          Length = 409

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 29/34 (85%)

Query: 1  MINLRTFDLNLLRVFEAIHRDRSVSVAADKLGLS 34
          ++NL  FDLNLLRVF+A+ R+RSV+ A D++GLS
Sbjct: 42 LVNLNAFDLNLLRVFDALIRERSVTRAGDQIGLS 75


>ref|YP_001351249.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gb|ABR85239.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 2  INLRTFDLNLLRVFEAIHRDRSVSVAADKLGLS 34
          +N++TFDLNLLRV +A+ R+R+VS AA++L LS
Sbjct: 1  MNIQTFDLNLLRVLDALLRERNVSRAAERLALS 33


>ref|ZP_01368209.1| hypothetical protein PaerPA_01005365 [Pseudomonas aeruginosa
          PACS2]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 2  INLRTFDLNLLRVFEAIHRDRSVSVAADKLGLS 34
          +N++TFDLNLLRV +A+ R+R+VS AA++L LS
Sbjct: 1  MNIQTFDLNLLRVLDALLRERNVSRAAERLALS 33


>ref|NP_253876.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 ref|YP_793661.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 ref|YP_002443161.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 ref|ZP_04937252.1| hypothetical protein PA2G_04760 [Pseudomonas aeruginosa 2192]
 ref|ZP_07796150.1| putative transcriptional regulator, LysR family [Pseudomonas
          aeruginosa 39016]
 gb|AAG08574.1|AE004932_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gb|ABJ14573.1| putative transcriptional regulator, LysR family [Pseudomonas
          aeruginosa UCBPP-PA14]
 gb|EAZ61371.1| hypothetical protein PA2G_04760 [Pseudomonas aeruginosa 2192]
 emb|CAW30337.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gb|EFQ41246.1| putative transcriptional regulator, LysR family [Pseudomonas
          aeruginosa 39016]
 gb|EGM20514.1| putative transcriptional regulator [Pseudomonas aeruginosa
          138244]
 dbj|GAA20340.1| probable transcriptional regulator [Pseudomonas aeruginosa
          NCMG1179]
 gb|AEO77785.1| putative transcriptional regulator [Pseudomonas aeruginosa M18]
 dbj|BAK92757.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
          NCGM2.S1]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 2  INLRTFDLNLLRVFEAIHRDRSVSVAADKLGLS 34
          +N++TFDLNLLRV +A+ R+R+VS AA++L LS
Sbjct: 1  MNIQTFDLNLLRVLDALLRERNVSRAAERLALS 33


>ref|ZP_06881521.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gb|EGM20206.1| putative transcriptional regulator [Pseudomonas aeruginosa
          152504]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 2  INLRTFDLNLLRVFEAIHRDRSVSVAADKLGLS 34
          +N++TFDLNLLRV +A+ R+R+VS AA++L LS
Sbjct: 1  MNIQTFDLNLLRVLDALLRERNVSRAAERLALS 33