BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0026.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106950.1| P-type conjugative transfer protein TrbG [Rh... 581 e-164 ref|NP_768259.1| conjugal transfer protein [Bradyrhizobium japon... 577 e-163 ref|ZP_08627033.1| conjugative transfer protein TrbG [Bradyrhizo... 550 e-155 ref|YP_001239377.1| putative conjugal transfer protein TrbG [Bra... 465 e-129 ref|YP_001237632.1| conjugal transfer protein TrbG [Bradyrhizobi... 442 e-122 >ref|YP_004106950.1| P-type conjugative transfer protein TrbG [Rhodopseudomonas palustris DX-1] gb|ADU42217.1| P-type conjugative transfer protein TrbG [Rhodopseudomonas palustris DX-1] Length = 344 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 289/318 (90%), Positives = 301/318 (94%) Query: 1 VTSKRAFLSALLVCSSALGGCATYIPPQISYDAEIPPPPAPPAPLDDKSRPLHVPPLWKP 60 +T+KRA L ALL+ SSALGGCATYIPP+ISYDAE+PP PA P LDD+SRPLH+PPLWKP Sbjct: 27 LTAKRAVLFALLLGSSALGGCATYIPPEISYDAEVPPLPATPVALDDRSRPLHIPPLWKP 86 Query: 61 ALGGKSGGKEEPDPVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD 120 ALGGKSGGKE+ +PVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD Sbjct: 87 ALGGKSGGKEDAEPVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD 146 Query: 121 VALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRR 180 +ALEEGE LTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRR Sbjct: 147 IALEEGELLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRR 206 Query: 181 TYLIELRSRERPYMPSVAWYYPETARERSRSVALRPPLPDPGQRISRYAIEGDSPPWRPL 240 TYLIELRSRERPYMPSVAWYYPET RERSRS AL+P LPDP QRISRY+IEGDSPPWRPL Sbjct: 207 TYLIELRSRERPYMPSVAWYYPETVRERSRSAALKPVLPDPAQRISRYSIEGDSPPWRPL 266 Query: 241 AAYDDGRKVYVEFPKGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFGAAELRLG 300 AAYDDGRKVYVEFP GIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLF AAELRLG Sbjct: 267 AAYDDGRKVYVEFPLGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFAAAELRLG 326 Query: 301 SERQQKVRIVRTDGRPSS 318 E QQKVRIVRTDGRPSS Sbjct: 327 GEHQQKVRIVRTDGRPSS 344 >ref|NP_768259.1| conjugal transfer protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46884.1| conjugal transfer protein [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 577 bits (1488), Expect = e-163, Method: Compositional matrix adjust. Identities = 284/318 (89%), Positives = 300/318 (94%) Query: 1 VTSKRAFLSALLVCSSALGGCATYIPPQISYDAEIPPPPAPPAPLDDKSRPLHVPPLWKP 60 +++KRA LSAL++CSS LGGCATYIPP+ISYD E+PP PA P LDD+ RPLHVPPLWKP Sbjct: 1 MSAKRALLSALMLCSSVLGGCATYIPPEISYDTEVPPLPATPVALDDRLRPLHVPPLWKP 60 Query: 61 ALGGKSGGKEEPDPVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD 120 ALGGKS GKEE +PVSRVETAN+AARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD Sbjct: 61 ALGGKSAGKEEVEPVSRVETANNAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD 120 Query: 121 VALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRR 180 +ALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVH+LVKPTRASIETNLVVNTDRR Sbjct: 121 IALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHVLVKPTRASIETNLVVNTDRR 180 Query: 181 TYLIELRSRERPYMPSVAWYYPETARERSRSVALRPPLPDPGQRISRYAIEGDSPPWRPL 240 TYLIELRSRERPYMPSVAWYYPETARER RSVAL+P LP+P QRISRYAIEGDSPPWRPL Sbjct: 181 TYLIELRSRERPYMPSVAWYYPETARERWRSVALKPALPNPAQRISRYAIEGDSPPWRPL 240 Query: 241 AAYDDGRKVYVEFPKGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFGAAELRLG 300 AAYDDGRKVYVEFP+GIVQGEMPPLFVIGPDGKTELVNYRA GNVLIVDRLF AAELRLG Sbjct: 241 AAYDDGRKVYVEFPQGIVQGEMPPLFVIGPDGKTELVNYRADGNVLIVDRLFAAAELRLG 300 Query: 301 SERQQKVRIVRTDGRPSS 318 E Q+KVRIVRT GRPSS Sbjct: 301 GEHQKKVRIVRTGGRPSS 318 >ref|ZP_08627033.1| conjugative transfer protein TrbG [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10313.1| conjugative transfer protein TrbG [Bradyrhizobiaceae bacterium SG-6C] Length = 344 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 282/318 (88%), Positives = 293/318 (92%) Query: 1 VTSKRAFLSALLVCSSALGGCATYIPPQISYDAEIPPPPAPPAPLDDKSRPLHVPPLWKP 60 V SKR LS +L C+SALGGCATYIPP+ISYD E+PP PAPP PLDD+ RPLHVPPLWKP Sbjct: 27 VISKRTLLSMVLSCTSALGGCATYIPPEISYDKEVPPLPAPPVPLDDRPRPLHVPPLWKP 86 Query: 61 ALGGKSGGKEEPDPVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITD 120 ALGGKSGGKEE PVSRVE AN+AARVEPRK+GYFNAAQIYAYSPGALYQ+YAAPGQITD Sbjct: 87 ALGGKSGGKEELAPVSRVERANNAARVEPRKKGYFNAAQIYAYSPGALYQVYAAPGQITD 146 Query: 121 VALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRR 180 +ALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTR SIETNLVVNTDRR Sbjct: 147 IALEEGEQLTGSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRVSIETNLVVNTDRR 206 Query: 181 TYLIELRSRERPYMPSVAWYYPETARERSRSVALRPPLPDPGQRISRYAIEGDSPPWRPL 240 TYLIELRSRERPYMPSVAWYYPET RERSR LRP LPDP QR+ RYAIEGDSPPWRPL Sbjct: 207 TYLIELRSRERPYMPSVAWYYPETVRERSRLATLRPVLPDPAQRVFRYAIEGDSPPWRPL 266 Query: 241 AAYDDGRKVYVEFPKGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFGAAELRLG 300 A YDDGRKVYVEFP+GIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLF AAELRLG Sbjct: 267 AVYDDGRKVYVEFPQGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFAAAELRLG 326 Query: 301 SERQQKVRIVRTDGRPSS 318 E Q KVRIVRTDGRPSS Sbjct: 327 GEHQPKVRIVRTDGRPSS 344 >ref|YP_001239377.1| putative conjugal transfer protein TrbG [Bradyrhizobium sp. BTAi1] gb|ABQ35471.1| putative conjugal transfer protein trbG [Bradyrhizobium sp. BTAi1] Length = 315 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/302 (76%), Positives = 252/302 (83%) Query: 14 CSSALGGCATYIPPQISYDAEIPPPPAPPAPLDDKSRPLHVPPLWKPALGGKSGGKEEPD 73 S L GCAT PP+I YDAE+PP PA P +DD+ R LHVPP WK GGK+G KEE D Sbjct: 11 LSFLLSGCATSKPPEIRYDAEVPPLPAAPVTVDDRPRALHVPPPWKVTFGGKAGTKEEGD 70 Query: 74 PVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITDVALEEGEQLTGSG 133 PV R+E AN AARVEPRK+GY+NAAQIYAYSPGA+YQ+YAAPGQITD+ALE GEQLTGSG Sbjct: 71 PVDRIEMANDAARVEPRKQGYYNAAQIYAYSPGAIYQVYAAPGQITDIALEPGEQLTGSG 130 Query: 134 PIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRRTYLIELRSRERPY 193 P+AAGDTVRWVVGDTESG+GDTRRVHILVKPTRA IETNLVVNTDRRTYLIELR+RE+PY Sbjct: 131 PVAAGDTVRWVVGDTESGAGDTRRVHILVKPTRAGIETNLVVNTDRRTYLIELRAREKPY 190 Query: 194 MPSVAWYYPETARERSRSVALRPPLPDPGQRISRYAIEGDSPPWRPLAAYDDGRKVYVEF 253 MP+VAWYYPE VAL P LPDP QR RY IEGD PPWRP+ YDDGRKVYVEF Sbjct: 191 MPAVAWYYPEANAAGRAIVALTPVLPDPAQRRFRYRIEGDDPPWRPVIVYDDGRKVYVEF 250 Query: 254 PKGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFGAAELRLGSERQQKVRIVRTD 313 GIVQGEMPPLFV G DGK E+VNYRA+GNVLIVDRLF AAELRLG + QQ VRIVRTD Sbjct: 251 SPGIVQGEMPPLFVTGSDGKPEIVNYRAHGNVLIVDRLFAAAELRLGGDPQQTVRIVRTD 310 Query: 314 GR 315 G+ Sbjct: 311 GQ 312 >ref|YP_001237632.1| conjugal transfer protein TrbG [Bradyrhizobium sp. BTAi1] gb|ABQ33726.1| conjugal transfer protein trbG [Bradyrhizobium sp. BTAi1] Length = 327 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/304 (69%), Positives = 248/304 (81%) Query: 11 LLVCSSALGGCATYIPPQISYDAEIPPPPAPPAPLDDKSRPLHVPPLWKPALGGKSGGKE 70 +++ ++AL GC T+ PPQ+SYD ++ P P D+++RPLHVPP W P GGK G +E Sbjct: 21 VVLVTAALSGCTTFKPPQVSYDNDLQSSPDLPMAADERARPLHVPPPWTPTRGGKKGDEE 80 Query: 71 EPDPVSRVETANSAARVEPRKRGYFNAAQIYAYSPGALYQIYAAPGQITDVALEEGEQLT 130 +P R+ TAN AARVEPR+ GYFNA Q++ YSPGALYQIYA+PGQITD+ALE GEQLT Sbjct: 81 ANEPADRIATANDAARVEPRRAGYFNAVQVFPYSPGALYQIYASPGQITDIALEPGEQLT 140 Query: 131 GSGPIAAGDTVRWVVGDTESGSGDTRRVHILVKPTRASIETNLVVNTDRRTYLIELRSRE 190 GSGP+AAGDTVRW+VGDTESG+GDTRRVHI+VKPTR +IETNLVVNTDRRTYLIELRSRE Sbjct: 141 GSGPLAAGDTVRWIVGDTESGNGDTRRVHIMVKPTRTAIETNLVVNTDRRTYLIELRSRE 200 Query: 191 RPYMPSVAWYYPETARERSRSVALRPPLPDPGQRISRYAIEGDSPPWRPLAAYDDGRKVY 250 RPYMPSVAW+YPE R+RS+++ P +P QR RY +EGD+PPWRP+ AYDDGRKVY Sbjct: 201 RPYMPSVAWFYPEDRRDRSKALPPTPLIPAIDQRRYRYVVEGDNPPWRPVNAYDDGRKVY 260 Query: 251 VEFPKGIVQGEMPPLFVIGPDGKTELVNYRAYGNVLIVDRLFGAAELRLGSERQQKVRIV 310 +EF GI QGEMPPLFV+G DGK ELVNYR Y N+LI DRLF AAELRLG E+QQ VRI Sbjct: 261 IEFSPGIAQGEMPPLFVVGQDGKPELVNYRVYKNILIADRLFAAAELRLGGEKQQIVRIA 320 Query: 311 RTDG 314 R DG Sbjct: 321 RNDG 324