BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0025.p (637 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106948.1| P-type conjugative transfer protein TrbL [Rh... 603 e-170 ref|ZP_08627035.1| conjugative transfer protein TrbL [Bradyrhizo... 588 e-165 ref|YP_001237630.1| conjugal transfer protein TrbL [Bradyrhizobi... 521 e-145 ref|YP_004109584.1| P-type conjugative transfer protein TrbL [Rh... 516 e-144 ref|YP_533740.1| conjugal transfer protein TrbL [Rhodopseudomona... 499 e-139 >ref|YP_004106948.1| P-type conjugative transfer protein TrbL [Rhodopseudomonas palustris DX-1] gb|ADU42215.1| P-type conjugative transfer protein TrbL [Rhodopseudomonas palustris DX-1] Length = 407 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 352/387 (90%), Positives = 365/387 (94%), Gaps = 1/387 (0%) Query: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGTDEDIIARL 60 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWG DEDI+ARL Sbjct: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGPDEDIVARL 60 Query: 61 VKKTLFVGVFAYLIGNWNNLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 VKKTLFVGVFAYLIGNWN+LARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR Sbjct: 61 VKKTLFVGVFAYLIGNWNSLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 Query: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 PLLDSISNLMGYISFFENFVQIVVLLFAW+VVLLAFFILAIQLFVTLIEFKLTTLAGFVL Sbjct: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWIVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 Query: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSQFTSGFRGAQPTIEDAMT 240 IPFGLFGKTAFAAERVLGNVISSGIKVLVLA IVGIGSTLFSQFT+GF G QPTIEDAMT Sbjct: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAAIVGIGSTLFSQFTAGFGGNQPTIEDAMT 240 Query: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAIGSGLAAGGLVAAGAGVAAGAGLASG 300 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAA+G+GLAAGG+VAAGAG+AAG +G Sbjct: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAVGTGLAAGGIVAAGAGLAAGGVGLAG 300 Query: 301 AIAGAARGGGAVLS-GASAAYRNGGLAGVAEAGASAAMSPLRRAAAAVGGEQAGERAAST 359 A GG + GASAAYR+GGLAGVAEAG+SAAMSPLRRAAAA GGEQAGE+AAS Sbjct: 301 GAIAGAARGGGAVIRGASAAYRSGGLAGVAEAGSSAAMSPLRRAAAAFGGEQAGEQAASA 360 Query: 360 SAEGRPDWARRMKRAETIRHGASAAGH 386 SAEG PDWARRMKRAETIRHGASAAGH Sbjct: 361 SAEGLPDWARRMKRAETIRHGASAAGH 387 >ref|ZP_08627035.1| conjugative transfer protein TrbL [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10315.1| conjugative transfer protein TrbL [Bradyrhizobiaceae bacterium SG-6C] Length = 409 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 347/402 (86%), Positives = 367/402 (91%), Gaps = 2/402 (0%) Query: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGTDEDIIARL 60 MTGTGIIDQFLETFTRYID GFGLLGS+VGYLATTL AIDITLA LFW WG DEDIIARL Sbjct: 1 MTGTGIIDQFLETFTRYIDTGFGLLGSEVGYLATTLVAIDITLATLFWIWGPDEDIIARL 60 Query: 61 VKKTLFVGVFAYLIGNWNNLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 VKKTLFVGVFAYLIGNWN+LARIVFESFAGLGLKASGAS+SA+DFLRPG+IAQVGLDAGR Sbjct: 61 VKKTLFVGVFAYLIGNWNSLARIVFESFAGLGLKASGASISAADFLRPGRIAQVGLDAGR 120 Query: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 PLL+SISNLMGYISFFENF+QIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL Sbjct: 121 PLLESISNLMGYISFFENFIQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 Query: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSQFTSGFRGAQPTIEDAMT 240 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFS+FTSGF G QPTIEDAMT Sbjct: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSRFTSGFGGTQPTIEDAMT 240 Query: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAIGS-GLAAGGLVAAGAGVAAGAGLAS 299 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAA+G+ A G + A A GAGLA Sbjct: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAVGTGLAAGGVVAAGAGLAAGGAGLAG 300 Query: 300 GAIAGAARGGGAVLSGASAAYRNGGLAGVAEAGASAAMSPLRRAAAAVGGE-QAGERAAS 358 GAIAGAARGG AVLSGASAAYR+GGL GVAEAGASAA+SPLRR AAA G Q GE AA+ Sbjct: 301 GAIAGAARGGRAVLSGASAAYRSGGLVGVAEAGASAAVSPLRRVAAAFGSSGQTGEPAAN 360 Query: 359 TSAEGRPDWARRMKRAETIRHGASAAGHAVRSGDHGGSGSSV 400 SA+ P WARRMKR +T+RHGASAA H+VR+GDHGGSG+SV Sbjct: 361 VSADAPPAWARRMKRTQTVRHGASAAAHSVRTGDHGGSGASV 402 >ref|YP_001237630.1| conjugal transfer protein TrbL [Bradyrhizobium sp. BTAi1] gb|ABQ33724.1| conjugal transfer protein trbL [Bradyrhizobium sp. BTAi1] Length = 401 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 305/401 (76%), Positives = 346/401 (86%), Gaps = 8/401 (1%) Query: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGTDEDIIARL 60 M GTGIIDQFLETFTRYID+GFGLLG +VGYLATTLAAID+TLA LFW+WG DEDI+AR+ Sbjct: 1 MGGTGIIDQFLETFTRYIDSGFGLLGGEVGYLATTLAAIDVTLAGLFWAWGADEDILARV 60 Query: 61 VKKTLFVGVFAYLIGNWNNLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 VKKTLFVGVFA+LIGNW++LARIVFESFAGLGLKASG LS +DFLRPGKIAQVGLDAGR Sbjct: 61 VKKTLFVGVFAFLIGNWSSLARIVFESFAGLGLKASGTGLSTADFLRPGKIAQVGLDAGR 120 Query: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 P+LDSIS LMGY+SFFENFVQI VLLFAW+VVLLAFFILAIQLF+TLIEFKLTTLAGFVL Sbjct: 121 PILDSISGLMGYVSFFENFVQISVLLFAWIVVLLAFFILAIQLFITLIEFKLTTLAGFVL 180 Query: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSQFTSGFRGAQPTIEDAMT 240 IPFGLFGKT FAAERVLGNVISSG+KVLVLAVIVGIGSTLF+QFT+GF G QPTI++AM Sbjct: 181 IPFGLFGKTDFAAERVLGNVISSGVKVLVLAVIVGIGSTLFTQFTAGFGGNQPTIDNAMA 240 Query: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAIGS-GLAAGGLVAAGAGVAAGAGLAS 299 LVL AL+LLGLGIFGPGIANG+VSGGPQLGAGAA+G+ A G +VA G G+A Sbjct: 241 LVLGALALLGLGIFGPGIANGIVSGGPQLGAGAAVGTGLAAGGAVVAGAGLATGGVGMAG 300 Query: 300 GAIAGAARGGGAVLSGASAAYRNGGLAGVAEAGASAAMSPLRRAAAAVGGEQAGERAAST 359 GA+ G ARG +V SGA++AYR GGL+GVA AG SA +SPLRR AA+ ++S+ Sbjct: 301 GALLGGARGVASVASGATSAYRAGGLSGVASAGGSAIVSPLRRMAAS-------FASSSS 353 Query: 360 SAEGRPDWARRMKRAETIRHGASAAGHAVRSGDHGGSGSSV 400 +++ P WARRMKRA+T+ GASAA HAVRSGD GSG+SV Sbjct: 354 TSDAAPAWARRMKRAQTVNQGASAATHAVRSGDSAGSGASV 394 >ref|YP_004109584.1| P-type conjugative transfer protein TrbL [Rhodopseudomonas palustris DX-1] gb|ADU44851.1| P-type conjugative transfer protein TrbL [Rhodopseudomonas palustris DX-1] Length = 413 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/406 (76%), Positives = 348/406 (85%), Gaps = 6/406 (1%) Query: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGTDEDIIARL 60 MTGTGIID+FLE FT YID+GFGLLG +V +LATTL AID+TLAALFWSWGTD+DIIARL Sbjct: 1 MTGTGIIDRFLEVFTSYIDSGFGLLGGEVSFLATTLVAIDVTLAALFWSWGTDDDIIARL 60 Query: 61 VKKTLFVGVFAYLIGNWNNLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 VKKTLFVGVFAYLIGNWN+LARIVFESF+GLGLKASG+ LSA+DFLRPG+IAQVG+DAGR Sbjct: 61 VKKTLFVGVFAYLIGNWNSLARIVFESFSGLGLKASGSGLSAADFLRPGRIAQVGIDAGR 120 Query: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 P+L++I LMGY++FFENFVQI VLLFAW+VVLLAFFILAIQLFVTLIEFKLTTLAGFVL Sbjct: 121 PILEAIFGLMGYVAFFENFVQIAVLLFAWIVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 Query: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSQFTSGFRGAQPTIEDAMT 240 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLF QFT+GF G QPTIEDA+ Sbjct: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFEQFTAGFGGNQPTIEDALA 240 Query: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAIGSGL-AAGGLVAAGAGVAAGAGLAS 299 LVLAAL+LLGLGIFGPGIANGLVSGGPQLGAGAAIG+G A G +VA AG AG Sbjct: 241 LVLAALALLGLGIFGPGIANGLVSGGPQLGAGAAIGTGFAAGGVVVAGAAGAGLVAGAGG 300 Query: 300 GAIAGAARGGGAVLSGASAAYRNGGLAGVAEAGASAAMSPLRRAAAAVGG-----EQAGE 354 A+AGAAR G ++++G ++AYR GGL+GVAEAGAS+ +S LRR+ AA GG E Sbjct: 301 AALAGAARRGASLVTGTASAYRAGGLSGVAEAGASSVLSSLRRSPAAPGGSNFGMENGAG 360 Query: 355 RAASTSAEGRPDWARRMKRAETIRHGASAAGHAVRSGDHGGSGSSV 400 A S P WA RM+R++T HG SAA HAVRSGDHGGSG+SV Sbjct: 361 NVALASGSSPPAWAERMRRSQTASHGVSAATHAVRSGDHGGSGASV 406 >ref|YP_533740.1| conjugal transfer protein TrbL [Rhodopseudomonas palustris BisB18] gb|ABD89421.1| TrbL/VirB6 plasmid conjugal transfer protein [Rhodopseudomonas palustris BisB18] Length = 390 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/402 (74%), Positives = 336/402 (83%), Gaps = 21/402 (5%) Query: 1 MTGTGIIDQFLETFTRYIDNGFGLLGSDVGYLATTLAAIDITLAALFWSWGTDEDIIARL 60 M GTG+ID+FLE FTR+ID+GFGLL +V +LATTLAAIDITLAA+FWSW DEDIIARL Sbjct: 1 MGGTGVIDRFLEVFTRFIDSGFGLLNGEVAFLATTLAAIDITLAAIFWSWAADEDIIARL 60 Query: 61 VKKTLFVGVFAYLIGNWNNLARIVFESFAGLGLKASGASLSASDFLRPGKIAQVGLDAGR 120 KKTLFVGVFAYLIGNWN+LARIVFES AGLGLKASG +S +D LRPG++AQVG+DAGR Sbjct: 61 AKKTLFVGVFAYLIGNWNSLARIVFESLAGLGLKASGTGMSMADLLRPGRVAQVGIDAGR 120 Query: 121 PLLDSISNLMGYISFFENFVQIVVLLFAWVVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 P+LDSIS L+GYISFFENFVQIVVLLFAW+VVLLAFFILAIQLFVTLIEFKLTTLAGFVL Sbjct: 121 PILDSISGLLGYISFFENFVQIVVLLFAWIVVLLAFFILAIQLFVTLIEFKLTTLAGFVL 180 Query: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGSTLFSQFTSGFRGAQPTIEDAMT 240 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIG+TLFSQFT+GF G QPTIEDA+T Sbjct: 181 IPFGLFGKTAFAAERVLGNVISSGIKVLVLAVIVGIGTTLFSQFTAGFGGNQPTIEDALT 240 Query: 241 LVLAALSLLGLGIFGPGIANGLVSGGPQLGAGAAIGSGLAAGGLVAAGAGVAAGAGLASG 300 LVLAALSLLGLGIFGPGIANG+VSGGPQLGAGAA+G+GLAAGG+VAAGA A A A+G Sbjct: 241 LVLAALSLLGLGIFGPGIANGIVSGGPQLGAGAAVGTGLAAGGIVAAGAAGATMAAGAAG 300 Query: 301 AIAGAARGGGAVLSGASAAYRNGGLAGVAEAGASAAMSPLRRAAAAVGGEQAGERAAS-- 358 + G A L +AG S SPLRR+AA +Q+G+ AAS Sbjct: 301 GVLAGGARGAATL---------------MQAGGSTIASPLRRSAA----DQSGQGAASPG 341 Query: 359 TSAEGRPDWARRMKRAETIRHGASAAGHAVRSGDHGGSGSSV 400 + + G P WA RMKR++T+ HGASAA HAVRSGDHGG G+SV Sbjct: 342 SPSGGEPAWATRMKRSQTVGHGASAAVHAVRSGDHGGGGASV 383