BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0023.p         (220 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [...   436   e-120
ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizo...   410   e-113
ref|ZP_08664730.1| conjugal transfer ATPase TrbE [Paracoccus sp....   386   e-105
ref|YP_001417777.1| conjugal transfer ATPase TrbE [Xanthobacter ...   382   e-104
ref|YP_001526777.1| conjugal transfer ATPase TrbE [Azorhizobium ...   381   e-104

>ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [Rhodopseudomonas
           palustris DX-1]
 gb|ADU42213.1| CagE, TrbE, VirB component of type IV transporter system, conserved
           region [Rhodopseudomonas palustris DX-1]
          Length = 813

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/219 (97%), Positives = 216/219 (98%)

Query: 1   LLDAEFERLGEASVQAFETEGLIGTSAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALD 60
           LLDAEFERLGEASVQAFETEGLIGT AAPAVL+YLFHRIG RLDGRPTLLIVDEGWLALD
Sbjct: 594 LLDAEFERLGEASVQAFETEGLIGTGAAPAVLSYLFHRIGGRLDGRPTLLIVDEGWLALD 653

Query: 61  DEDFAGQLREWLKTLRKKNASVIFATQSLSDVDGSAIAPAIIESCPTRLLLPNERAIEPQ 120
           DEDFAGQLREWLKTLRKKNASVIFATQSLSD+DGSAIAPAIIESCPTRLLLPNERAIEPQ
Sbjct: 654 DEDFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQ 713

Query: 121 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 180
           ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA
Sbjct: 714 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 773

Query: 181 IAQLFAEHGPDGFVPAWLQHRGVAWAIDLIPNLVNLEKS 219
           IAQL AEHGPDGFVPAWLQHRGVAWA+DLIPNLVNLEKS
Sbjct: 774 IAQLLAEHGPDGFVPAWLQHRGVAWALDLIPNLVNLEKS 812


>ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP10317.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 813

 Score =  410 bits (1053), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/219 (90%), Positives = 208/219 (94%)

Query: 1   LLDAEFERLGEASVQAFETEGLIGTSAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALD 60
           LLDAE ERLGEASVQAFETEGL+G+ AAPAVL+YLFHRIGDRLDGRP+LLIVDEGW  LD
Sbjct: 594 LLDAESERLGEASVQAFETEGLLGSGAAPAVLSYLFHRIGDRLDGRPSLLIVDEGWFVLD 653

Query: 61  DEDFAGQLREWLKTLRKKNASVIFATQSLSDVDGSAIAPAIIESCPTRLLLPNERAIEPQ 120
           D DFAGQLREWLKTLRKKNASVIFATQSLSD+DGSAIAPAIIESCPTR+LLPNERAIEPQ
Sbjct: 654 DRDFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRILLPNERAIEPQ 713

Query: 121 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 180
           ITAIYRRFGLNDRQIELLSRA PKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA
Sbjct: 714 ITAIYRRFGLNDRQIELLSRAVPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 773

Query: 181 IAQLFAEHGPDGFVPAWLQHRGVAWAIDLIPNLVNLEKS 219
           I +L +EHG DGFVPAWLQHRGVAWA DLIPNL NLE+S
Sbjct: 774 IERLLSEHGRDGFVPAWLQHRGVAWATDLIPNLGNLERS 812


>ref|ZP_08664730.1| conjugal transfer ATPase TrbE [Paracoccus sp. TRP]
          Length = 818

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/216 (86%), Positives = 201/216 (93%)

Query: 1   LLDAEFERLGEASVQAFETEGLIGTSAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALD 60
           LLDAE E LG A+VQAFE EGL+GT +APAVLAYLFHRIGDRLDG PTLLI+DEGWLALD
Sbjct: 593 LLDAENEHLGHAAVQAFEIEGLVGTGSAPAVLAYLFHRIGDRLDGSPTLLIIDEGWLALD 652

Query: 61  DEDFAGQLREWLKTLRKKNASVIFATQSLSDVDGSAIAPAIIESCPTRLLLPNERAIEPQ 120
           DE FAGQLREWLKTLRKKNASVIFATQSLSD+DGSAIAPAIIESCPTRLLLPNERAIEPQ
Sbjct: 653 DEGFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQ 712

Query: 121 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 180
           ITAIYRRFGLNDRQIE+L+RATPKRDYYCQSRRGNR+F+LGL EV LA TAASSKTDQ A
Sbjct: 713 ITAIYRRFGLNDRQIEILARATPKRDYYCQSRRGNRLFDLGLSEVGLALTAASSKTDQTA 772

Query: 181 IAQLFAEHGPDGFVPAWLQHRGVAWAIDLIPNLVNL 216
           IA++FAEHGPDGF+PAWL+ RGV WA DLIP+L NL
Sbjct: 773 IARIFAEHGPDGFLPAWLRLRGVDWAADLIPDLANL 808


>ref|YP_001417777.1| conjugal transfer ATPase TrbE [Xanthobacter autotrophicus Py2]
 gb|ABS68120.1| AAA ATPase [Xanthobacter autotrophicus Py2]
          Length = 812

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/220 (85%), Positives = 201/220 (91%)

Query: 1   LLDAEFERLGEASVQAFETEGLIGTSAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALD 60
           LLDAE E LGEA VQAFETEGLIGT+AAPAVLAYLFHRI DRLDG PTLLIVDEGWLALD
Sbjct: 593 LLDAESEHLGEAVVQAFETEGLIGTAAAPAVLAYLFHRIEDRLDGSPTLLIVDEGWLALD 652

Query: 61  DEDFAGQLREWLKTLRKKNASVIFATQSLSDVDGSAIAPAIIESCPTRLLLPNERAIEPQ 120
           DEDFAGQLREWLKTLRKKNASV+FATQSLSD+D SAIAPAI+ESC TRLLLPNERAIEPQ
Sbjct: 653 DEDFAGQLREWLKTLRKKNASVVFATQSLSDIDSSAIAPAIVESCQTRLLLPNERAIEPQ 712

Query: 121 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 180
           ITAIYRRFGLNDRQIE+L+RA PKRDYYCQSRRGNR+FELGL +VALA  AASSKTDQAA
Sbjct: 713 ITAIYRRFGLNDRQIEILARAMPKRDYYCQSRRGNRLFELGLSDVALALCAASSKTDQAA 772

Query: 181 IAQLFAEHGPDGFVPAWLQHRGVAWAIDLIPNLVNLEKSP 220
           I ++ AEHG +GF+PAWL+ RGVAWA DLIPNL NLE  P
Sbjct: 773 IERVIAEHGREGFLPAWLRLRGVAWAADLIPNLNNLETQP 812


>ref|YP_001526777.1| conjugal transfer ATPase TrbE [Azorhizobium caulinodans ORS 571]
 dbj|BAF89859.1| ATPase precursor [Azorhizobium caulinodans ORS 571]
          Length = 812

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 199/220 (90%)

Query: 1   LLDAEFERLGEASVQAFETEGLIGTSAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALD 60
           LLDAE E LG A+VQ FETEGLIGT AAPAVLAYLFHRI DRLDG PTL+I+DEGWLALD
Sbjct: 593 LLDAETEHLGSATVQVFETEGLIGTEAAPAVLAYLFHRIEDRLDGSPTLIIIDEGWLALD 652

Query: 61  DEDFAGQLREWLKTLRKKNASVIFATQSLSDVDGSAIAPAIIESCPTRLLLPNERAIEPQ 120
           DE FAGQLREWLKTLRKKNASVIFATQSLSD+DGSAIAPAIIESCPTRLLLPNERAIEPQ
Sbjct: 653 DEAFAGQLREWLKTLRKKNASVIFATQSLSDIDGSAIAPAIIESCPTRLLLPNERAIEPQ 712

Query: 121 ITAIYRRFGLNDRQIELLSRATPKRDYYCQSRRGNRMFELGLGEVALAFTAASSKTDQAA 180
           ITAIYRRFGLNDRQIE+L+RATPKRDYYCQSRRGNR+FELGL EVALA  AASSKTDQ A
Sbjct: 713 ITAIYRRFGLNDRQIEILARATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQQA 772

Query: 181 IAQLFAEHGPDGFVPAWLQHRGVAWAIDLIPNLVNLEKSP 220
           I ++FA +G DGF+ AWL+HRG+ WA DL+PNL NLE  P
Sbjct: 773 IGRIFAAYGRDGFLDAWLRHRGLGWAADLLPNLTNLETQP 812