BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0022.p (599 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [... 1050 0.0 ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizo... 986 0.0 ref|YP_001237628.1| conjugal transfer ATPase TrbE [Bradyrhizobiu... 968 0.0 ref|YP_533743.1| conjugal transfer ATPase TrbE [Rhodopseudomonas... 916 0.0 ref|YP_782927.1| conjugal transfer ATPase TrbE [Rhodopseudomonas... 910 0.0 >ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [Rhodopseudomonas palustris DX-1] gb|ADU42213.1| CagE, TrbE, VirB component of type IV transporter system, conserved region [Rhodopseudomonas palustris DX-1] Length = 813 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/536 (94%), Positives = 524/536 (97%) Query: 1 MMNLAEYRRSDARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 MMNLAEYR S+ARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG Sbjct: 1 MMNLAEYRHSNARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 Query: 61 RLNNALRRLGSGWAVFVEAQRHFAGSYPPNAFPDVASALVDAERRAQFEEAGAHYESSYF 120 RLNNALRRLGSGWAVFVEAQRH AG+YPPN FPDVASALVDAERRAQFEEAGAHYESSYF Sbjct: 61 RLNNALRRLGSGWAVFVEAQRHSAGAYPPNTFPDVASALVDAERRAQFEEAGAHYESSYF 120 Query: 121 LTFLYLPPEEGAARAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLFEGFMPECAWLD 180 LTFLYLPPEEGAA+AERLLYEGRDRTVGADAREVLRGFIDQTNRVLQL EGFMP+CAWLD Sbjct: 121 LTFLYLPPEEGAAKAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLVEGFMPDCAWLD 180 Query: 181 DQDTLTYLHSTISTKRHRVRAPEIPMYIDALLSDQPLTGGLEPMLGSANIRVLTIVGFPG 240 DQ TLTYLHSTISTKRHRVR PEIPMYIDALL+DQPLTGGLEPMLGSAN+RVLTIVGFPG Sbjct: 181 DQATLTYLHSTISTKRHRVRVPEIPMYIDALLADQPLTGGLEPMLGSANVRVLTIVGFPG 240 Query: 241 ATTPGILDDLNRLAFSYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSIGAILKEVMTNE 300 ATTPG+LDDLNRLAFSYRWSTRAIMLDK DATKLLT+IRRQWFAKRKSIGAILKEVMTNE Sbjct: 241 ATTPGVLDDLNRLAFSYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSIGAILKEVMTNE 300 Query: 301 ASTLLDTDAHNKALDADAALQELGSDQIGQAFVTATITVWDRDPNTADEKLRLVEKVIQG 360 ASTLLDTDAHNKA+DADAALQELGSDQIGQAFVTAT+TVWDRDPN ADEKLRLVEKVIQG Sbjct: 301 ASTLLDTDAHNKAIDADAALQELGSDQIGQAFVTATLTVWDRDPNAADEKLRLVEKVIQG 360 Query: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPISTLNLAHMIPISAIWAGEARDLHFKGP 420 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPP+STLNLAHMIP+SA+WAGEARDLHFK P Sbjct: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPVSTLNLAHMIPMSAVWAGEARDLHFKAP 420 Query: 421 PLLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 LLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG Sbjct: 421 ALLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 Query: 481 GSIRAAAVAMGGDWHDLGGALSDGGEQPVALQPLAWIDDPSERGWATEWIGAILAR 536 GSIRAAA+AMGGDWHDLGGALSDG E PVALQPLAWI+DPSERGWATEWIGAILAR Sbjct: 481 GSIRAAALAMGGDWHDLGGALSDGDENPVALQPLAWIEDPSERGWATEWIGAILAR 536 >ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10317.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium SG-6C] Length = 813 Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/536 (89%), Positives = 504/536 (94%) Query: 1 MMNLAEYRRSDARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 M+NLAEYR+S+ARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG Sbjct: 1 MLNLAEYRQSNARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 Query: 61 RLNNALRRLGSGWAVFVEAQRHFAGSYPPNAFPDVASALVDAERRAQFEEAGAHYESSYF 120 RLNNALRRLGSGWAVFVEAQRH AG YP N FPDV+SALVDAERRAQF+E GAHYESSYF Sbjct: 61 RLNNALRRLGSGWAVFVEAQRHSAGIYPLNTFPDVSSALVDAERRAQFDEEGAHYESSYF 120 Query: 121 LTFLYLPPEEGAARAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLFEGFMPECAWLD 180 LTFLYL EEGAA AERLLYEGRDRTVGADAREVLRGF+DQTNRVL L EGFMPECAWLD Sbjct: 121 LTFLYLSREEGAATAERLLYEGRDRTVGADAREVLRGFVDQTNRVLGLVEGFMPECAWLD 180 Query: 181 DQDTLTYLHSTISTKRHRVRAPEIPMYIDALLSDQPLTGGLEPMLGSANIRVLTIVGFPG 240 D+ TLTYLHSTIST+RHRVR PEIPMY+D LL+DQPLTGGLEPMLGSAN+RVLTIVGFPG Sbjct: 181 DEATLTYLHSTISTRRHRVRVPEIPMYLDGLLADQPLTGGLEPMLGSANVRVLTIVGFPG 240 Query: 241 ATTPGILDDLNRLAFSYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSIGAILKEVMTNE 300 ATTPGILDDLNRLAF YRWSTRAIMLDK DATKL+TRIRRQWFAKRKSIGAILKEVMTNE Sbjct: 241 ATTPGILDDLNRLAFPYRWSTRAIMLDKTDATKLVTRIRRQWFAKRKSIGAILKEVMTNE 300 Query: 301 ASTLLDTDAHNKALDADAALQELGSDQIGQAFVTATITVWDRDPNTADEKLRLVEKVIQG 360 ASTLLDTDAHNKA+DADAALQELGSDQ+ QA+VTATITVWD DP ADEKLR VEKVIQG Sbjct: 301 ASTLLDTDAHNKAIDADAALQELGSDQVRQAYVTATITVWDGDPGAADEKLRQVEKVIQG 360 Query: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPISTLNLAHMIPISAIWAGEARDLHFKGP 420 RDFTCMIETVNAVEAWLGSLPGHVYANVR+PP+STLNLAHMIP+SA+WAGEARDLH KGP Sbjct: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRRPPVSTLNLAHMIPMSAVWAGEARDLHLKGP 420 Query: 421 PLLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 PL+FGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG Sbjct: 421 PLVFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 Query: 481 GSIRAAAVAMGGDWHDLGGALSDGGEQPVALQPLAWIDDPSERGWATEWIGAILAR 536 GSIRAA AMGGDWHDLGGALS+ PV+LQPL IDD SER WA+EWI A+LAR Sbjct: 481 GSIRAATTAMGGDWHDLGGALSEDRSSPVSLQPLVGIDDLSERAWASEWIAALLAR 536 >ref|YP_001237628.1| conjugal transfer ATPase TrbE [Bradyrhizobium sp. BTAi1] gb|ABQ33722.1| conjugal transfer protein trbE [Bradyrhizobium sp. BTAi1] Length = 813 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/554 (84%), Positives = 504/554 (90%), Gaps = 6/554 (1%) Query: 1 MMNLAEYRRSDARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 MMNLAEYRRS+ RLADFLPWAALVDEGI+LNKDGSFQRTA+FRGPDLDSAVPAELVAVAG Sbjct: 1 MMNLAEYRRSNTRLADFLPWAALVDEGIVLNKDGSFQRTARFRGPDLDSAVPAELVAVAG 60 Query: 61 RLNNALRRLGSGWAVFVEAQRHFAGSYPPNAFPDVASALVDAERRAQFEEAGAHYESSYF 120 RLNNALRRL SGWA+FVEAQRH GSYPPN FPD ASALVDAERRAQFEEAGAHYESSYF Sbjct: 61 RLNNALRRLESGWAIFVEAQRHSTGSYPPNTFPDAASALVDAERRAQFEEAGAHYESSYF 120 Query: 121 LTFLYLPPEEGAARAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLFEGFMPECAWLD 180 LTFLYLPP EG A+ ERLLYEG +RTV AD RE+LRGF+D+TNRVLQL EGFMPECAWLD Sbjct: 121 LTFLYLPPPEGTAKTERLLYEGSNRTVDADGREILRGFVDRTNRVLQLVEGFMPECAWLD 180 Query: 181 DQDTLTYLHSTISTKRHRVRAPEIPMYIDALLSDQPLTGGLEPMLGSANIRVLTIVGFPG 240 D++TLTYLHSTISTKRHRVR PEIPMY+DALL+DQPLTGGLEPMLGSA++R+LT+VGFP Sbjct: 181 DEETLTYLHSTISTKRHRVRVPEIPMYLDALLADQPLTGGLEPMLGSAHLRILTVVGFPT 240 Query: 241 ATTPGILDDLNRLAFSYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSIGAILKEVMTNE 300 ATTPGILDDLNRL F+YRWSTRAIMLDKADATKLLTRIRRQWFAKRKS+ AILKE+MTNE Sbjct: 241 ATTPGILDDLNRLPFTYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSVAAILKEIMTNE 300 Query: 301 ASTLLDTDAHNKALDADAALQELGSDQIGQAFVTATITVWDRDPNTADEKLRLVEKVIQG 360 AS LLDTDAHNKA+DADAALQELGSDQIG+AFVTATI+VWD +P +ADEKLRLVEKVIQG Sbjct: 301 ASALLDTDAHNKAMDADAALQELGSDQIGEAFVTATISVWDGEPASADEKLRLVEKVIQG 360 Query: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPISTLNLAHMIPISAIWAGEARDLHFKGP 420 RDFTCMIETVNAVEAWLGS+PGHVYANVRQPPISTLNLAHMIP+SA+WAGE RD HFK P Sbjct: 361 RDFTCMIETVNAVEAWLGSVPGHVYANVRQPPISTLNLAHMIPLSAVWAGEPRDHHFKAP 420 Query: 421 PLLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 PL KTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYP SQ+FAFDFG Sbjct: 421 PLFLAKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPESQIFAFDFG 480 Query: 481 GSIRAAAVAMGGDWHDLGGALSDGGEQPVALQPLAWIDDPSERGWATEWIGAILARX--- 537 GSIRAAA+AMGGDWHDLGGA++ + V LQPLA IDD ER WAT+WIG+IL+R Sbjct: 481 GSIRAAAIAMGGDWHDLGGAVTGETSESVFLQPLAGIDDIGERAWATDWIGSILSRERIE 540 Query: 538 ---AATGMIWAVLC 548 A IW+ L Sbjct: 541 VTPEAKEHIWSALS 554 >ref|YP_533743.1| conjugal transfer ATPase TrbE [Rhodopseudomonas palustris BisB18] gb|ABD89424.1| ATPase [Rhodopseudomonas palustris BisB18] Length = 813 Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/536 (82%), Positives = 477/536 (88%) Query: 1 MMNLAEYRRSDARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 MMNL+EYR S LADFLPWAALV +G++LNKDGSFQRTA FRGPDLDSAVPAELV + Sbjct: 1 MMNLSEYRHSTTCLADFLPWAALVGQGVVLNKDGSFQRTATFRGPDLDSAVPAELVGITA 60 Query: 61 RLNNALRRLGSGWAVFVEAQRHFAGSYPPNAFPDVASALVDAERRAQFEEAGAHYESSYF 120 RLNNALRRLGSGWAVFVEAQRH A YP FPD ASALVD ERRAQFEE GAH+ESSYF Sbjct: 61 RLNNALRRLGSGWAVFVEAQRHPASKYPECHFPDAASALVDLERRAQFEEEGAHFESSYF 120 Query: 121 LTFLYLPPEEGAARAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLFEGFMPECAWLD 180 LTFLYLPP ARAERLLYEGRDR G DARE+L GF+D+T+RVLQL EGFMPE AWLD Sbjct: 121 LTFLYLPPAADVARAERLLYEGRDRDEGTDAREILGGFVDRTDRVLQLVEGFMPESAWLD 180 Query: 181 DQDTLTYLHSTISTKRHRVRAPEIPMYIDALLSDQPLTGGLEPMLGSANIRVLTIVGFPG 240 DQDTLTYLHSTISTKR+R+R PE PMY+DALL+DQPLTGGLEPMLG+A++RVLTIVGFP Sbjct: 181 DQDTLTYLHSTISTKRYRIRVPETPMYLDALLADQPLTGGLEPMLGNAHLRVLTIVGFPT 240 Query: 241 ATTPGILDDLNRLAFSYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSIGAILKEVMTNE 300 TTPGILD+LN LAF+YRWSTRAIMLDK DATKLLT+IRRQWFAKRKSI AILKEVMTNE Sbjct: 241 TTTPGILDELNALAFAYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSIAAILKEVMTNE 300 Query: 301 ASTLLDTDAHNKALDADAALQELGSDQIGQAFVTATITVWDRDPNTADEKLRLVEKVIQG 360 A+TL+DTDA NKA+DADAALQELGSD IGQAFVTAT+ VWD DP ADEKLRLVEKVIQG Sbjct: 301 AATLVDTDAQNKAMDADAALQELGSDAIGQAFVTATVAVWDGDPRAADEKLRLVEKVIQG 360 Query: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPISTLNLAHMIPISAIWAGEARDLHFKGP 420 RDFTCM E+VNAVEAWLGSLPGH YANVRQPP+STLNLAHMIP+SA+WAG RD HF P Sbjct: 361 RDFTCMAESVNAVEAWLGSLPGHAYANVRQPPVSTLNLAHMIPLSAVWAGPLRDDHFDAP 420 Query: 421 PLLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 PL F +TEG+TPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRY SQVFAFDFG Sbjct: 421 PLFFARTEGATPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGSQVFAFDFG 480 Query: 481 GSIRAAAVAMGGDWHDLGGALSDGGEQPVALQPLAWIDDPSERGWATEWIGAILAR 536 GSIRAAA+AMGGDWHDLGGALSD +PVALQPLA IDD +ERGWA EWIG ILAR Sbjct: 481 GSIRAAALAMGGDWHDLGGALSDNATEPVALQPLALIDDAAERGWAAEWIGNILAR 536 >ref|YP_782927.1| conjugal transfer ATPase TrbE [Rhodopseudomonas palustris BisA53] gb|ABJ07947.1| AAA ATPase [Rhodopseudomonas palustris BisA53] Length = 813 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/536 (81%), Positives = 477/536 (88%) Query: 1 MMNLAEYRRSDARLADFLPWAALVDEGIILNKDGSFQRTAKFRGPDLDSAVPAELVAVAG 60 MMNL+EYR + LADFLPWAALV +G++LNKDGSFQRTA FRGPDLDSAVPAELV VA Sbjct: 1 MMNLSEYRHATTCLADFLPWAALVGQGVVLNKDGSFQRTASFRGPDLDSAVPAELVGVAA 60 Query: 61 RLNNALRRLGSGWAVFVEAQRHFAGSYPPNAFPDVASALVDAERRAQFEEAGAHYESSYF 120 RLNNALRRLGSGWAVFVEAQRH A YP FP+ ASALVD ERRAQFEE GAH+ESSYF Sbjct: 61 RLNNALRRLGSGWAVFVEAQRHPASKYPECHFPEAASALVDLERRAQFEEEGAHFESSYF 120 Query: 121 LTFLYLPPEEGAARAERLLYEGRDRTVGADAREVLRGFIDQTNRVLQLFEGFMPECAWLD 180 LTFLYLPP ARAERLLYEGR+R G DARE+LRGF+D+T+RVLQL EGFMPE AWLD Sbjct: 121 LTFLYLPPAADVARAERLLYEGRERDEGTDAREILRGFVDRTDRVLQLVEGFMPESAWLD 180 Query: 181 DQDTLTYLHSTISTKRHRVRAPEIPMYIDALLSDQPLTGGLEPMLGSANIRVLTIVGFPG 240 QDTLTYLHSTISTKR+ +R PE PMY+DALL+DQPLTGGLEPMLG+A++RVLTIVGFP Sbjct: 181 GQDTLTYLHSTISTKRYGIRVPETPMYLDALLADQPLTGGLEPMLGNAHLRVLTIVGFPT 240 Query: 241 ATTPGILDDLNRLAFSYRWSTRAIMLDKADATKLLTRIRRQWFAKRKSIGAILKEVMTNE 300 ATTPGILD+LN LAF+YRWSTRAIMLDK DAT+LLT+IRRQWFAKRKSI AILKEVM+NE Sbjct: 241 ATTPGILDELNALAFAYRWSTRAIMLDKTDATRLLTKIRRQWFAKRKSIAAILKEVMSNE 300 Query: 301 ASTLLDTDAHNKALDADAALQELGSDQIGQAFVTATITVWDRDPNTADEKLRLVEKVIQG 360 A+TL+DTDA NKA+DADAALQELGSD IGQAFVTAT+ VWD DP ADEKLRLVEKVIQG Sbjct: 301 AATLVDTDAQNKAMDADAALQELGSDAIGQAFVTATVAVWDNDPRGADEKLRLVEKVIQG 360 Query: 361 RDFTCMIETVNAVEAWLGSLPGHVYANVRQPPISTLNLAHMIPISAIWAGEARDLHFKGP 420 RDFTCM+E+VNAVEAWLGSLPGH YANVRQPP+STLNLAHMIP+SA+WAG RD HF GP Sbjct: 361 RDFTCMVESVNAVEAWLGSLPGHAYANVRQPPVSTLNLAHMIPLSAVWAGPLRDEHFDGP 420 Query: 421 PLLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYPNSQVFAFDFG 480 PL F +TEG+TPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRY SQVF FDFG Sbjct: 421 PLFFARTEGATPFRFSLHVGDVGHTLVVGPTGAGKSVLLALMALQFRRYAGSQVFTFDFG 480 Query: 481 GSIRAAAVAMGGDWHDLGGALSDGGEQPVALQPLAWIDDPSERGWATEWIGAILAR 536 GS RA A+AMGGDWHDLGGALSD +PVALQPLA IDD +ERGWA EWIG ILAR Sbjct: 481 GSFRAPALAMGGDWHDLGGALSDNATEPVALQPLALIDDAAERGWAAEWIGNILAR 536