BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0018.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106943.1| P-type conjugative transfer ATPase TrbB [Rho... 580 e-164 ref|ZP_08627040.1| conjugative transfer protein TrbB [Bradyrhizo... 546 e-153 ref|YP_001243488.1| conjugal transfer protein TrbB [Bradyrhizobi... 526 e-147 ref|YP_533746.1| type II secretion system protein E [Rhodopseudo... 526 e-147 ref|YP_001415658.1| P-type conjugative transfer ATPase TrbB [Xan... 525 e-147 >ref|YP_004106943.1| P-type conjugative transfer ATPase TrbB [Rhodopseudomonas palustris DX-1] gb|ADU42210.1| P-type conjugative transfer ATPase TrbB [Rhodopseudomonas palustris DX-1] Length = 324 Score = 580 bits (1495), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/317 (92%), Positives = 309/317 (97%) Query: 4 HSIQSEASSRGARMLRSALGSAIAGYLEDEAIIEVMLNPDGRLWIDRLSNGLIDTGETLS 63 HSIQSEA+SRGARMLRSALG+AIAGYLEDEAIIEVMLNPDGRLWIDRLS+GLIDTG+TLS Sbjct: 8 HSIQSEANSRGARMLRSALGTAIAGYLEDEAIIEVMLNPDGRLWIDRLSSGLIDTGKTLS 67 Query: 64 AADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVF 123 AADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVF Sbjct: 68 AADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVF 127 Query: 124 TLDDYVARRIMTSEQAKTLQNAVAARKNILVAGGTSTGKTTLTNALLAEVAKTSDRVVLI 183 TLDDYVA+ IMTSEQA+ L++AVAARKNILVAGGTSTGKTTLTNALLAEVAKT+DRVVLI Sbjct: 128 TLDDYVAKEIMTSEQAEILKSAVAARKNILVAGGTSTGKTTLTNALLAEVAKTADRVVLI 187 Query: 184 EDTRELQCRAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTG 243 EDTRELQC APNLVALRT DGVATLSDLVRSSLRLRPDRIP+GEVRGAEALDLLKAWGTG Sbjct: 188 EDTRELQCTAPNLVALRTNDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAWGTG 247 Query: 244 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLAGRSADRRLAELAL 303 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETI+++AVLAGR ADRRL ELAL Sbjct: 248 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINVIAVLAGRGADRRLVELAL 307 Query: 304 ISGLSASGDYNLSSAGD 320 + GL A+GDY+LS+AGD Sbjct: 308 VRGLGAAGDYSLSTAGD 324 >ref|ZP_08627040.1| conjugative transfer protein TrbB [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10320.1| conjugative transfer protein TrbB [Bradyrhizobiaceae bacterium SG-6C] Length = 304 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 275/304 (90%), Positives = 292/304 (96%) Query: 17 MLRSALGSAIAGYLEDEAIIEVMLNPDGRLWIDRLSNGLIDTGETLSAADGERIVRLVAH 76 ML+SALG+AIAGYL+D+AI+EV+LNPDGRLWIDRLS+GL DTGETLSAADGERIVRLVAH Sbjct: 1 MLKSALGAAIAGYLDDDAIVEVLLNPDGRLWIDRLSSGLTDTGETLSAADGERIVRLVAH 60 Query: 77 HVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVARRIMTS 136 HVGAEVHAG+PRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVA +MTS Sbjct: 61 HVGAEVHAGSPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVAAGVMTS 120 Query: 137 EQAKTLQNAVAARKNILVAGGTSTGKTTLTNALLAEVAKTSDRVVLIEDTRELQCRAPNL 196 QAKTL++AVAARKNILVAGGTSTGKTTLTNALLAEVAK+SDRVVLIEDTRELQC+APNL Sbjct: 121 GQAKTLRSAVAARKNILVAGGTSTGKTTLTNALLAEVAKSSDRVVLIEDTRELQCKAPNL 180 Query: 197 VALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHAGTA 256 VALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHAGTA Sbjct: 181 VALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHAGTA 240 Query: 257 LGALRRLEQLIQEAVITVPRALIAETIDLVAVLAGRSADRRLAELALISGLSASGDYNLS 316 LGALRRLEQLIQEAVITVPRALIAETI+L+AVL GR DRRLAELA ++GL A GDY LS Sbjct: 241 LGALRRLEQLIQEAVITVPRALIAETINLIAVLTGRGTDRRLAELAFVTGLGAVGDYGLS 300 Query: 317 SAGD 320 AGD Sbjct: 301 PAGD 304 >ref|YP_001243488.1| conjugal transfer protein TrbB [Bradyrhizobium sp. BTAi1] gb|ABQ39582.1| conjugal transfer protein trbB [Bradyrhizobium sp. BTAi1] Length = 327 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 268/318 (84%), Positives = 289/318 (90%) Query: 1 MAIHSIQSEASSRGARMLRSALGSAIAGYLEDEAIIEVMLNPDGRLWIDRLSNGLIDTGE 60 MA+ QSEA RG RMLR+ALG AIAG+LED +I+EVMLNPDGRLWIDRLS GL DTGE Sbjct: 1 MAVSFQQSEAVLRGTRMLRTALGPAIAGFLEDPSIVEVMLNPDGRLWIDRLSGGLADTGE 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAV 120 LS ADGERIVRLVAHHVGAEVHAG+PRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAV Sbjct: 61 RLSPADGERIVRLVAHHVGAEVHAGSPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAV 120 Query: 121 AVFTLDDYVARRIMTSEQAKTLQNAVAARKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTL DYVA IM++EQA+ L+ AVA R+NILVAGGTSTGKTTLTNALLAEV+K++DRV Sbjct: 121 AVFTLHDYVAAGIMSAEQAEILRRAVADRRNILVAGGTSTGKTTLTNALLAEVSKSADRV 180 Query: 181 VLIEDTRELQCRAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 VLIEDTRELQC APNLVA+RTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLAGRSADRRLAE 300 GTGHPG IGTIHAGTA+GALRRLEQLIQEAV+TVPRALIAETIDLVAVL+GR A RRLAE Sbjct: 241 GTGHPGAIGTIHAGTAIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGASRRLAE 300 Query: 301 LALISGLSASGDYNLSSA 318 LA + GL GDY ++ A Sbjct: 301 LARVEGLGPGGDYRITPA 318 >ref|YP_533746.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] gb|ABD89427.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] Length = 322 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 266/320 (83%), Positives = 288/320 (90%) Query: 1 MAIHSIQSEASSRGARMLRSALGSAIAGYLEDEAIIEVMLNPDGRLWIDRLSNGLIDTGE 60 MAIH + EA+SRGARMLR+ALG +IA +LED ++EVMLNPDGRLWIDRL+ GL+DTGE Sbjct: 1 MAIHHLNHEATSRGARMLRTALGPSIALWLEDAEVVEVMLNPDGRLWIDRLAVGLVDTGE 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAV 120 LSA DGERIVRLVAHHVG EVH+ +PRVSAELP TGERFEGLLPPVVAAP FAIRKPAV Sbjct: 61 RLSARDGERIVRLVAHHVGVEVHSASPRVSAELPETGERFEGLLPPVVAAPTFAIRKPAV 120 Query: 121 AVFTLDDYVARRIMTSEQAKTLQNAVAARKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTLDDY A IMT+ QA+TL+ AVA R+NILVAGGTSTGKTTLTNALLAEVAKTSDRV Sbjct: 121 AVFTLDDYAAAGIMTACQAETLRAAVAERRNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 Query: 181 VLIEDTRELQCRAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 VLIEDTRELQC+APN VALRTKDGVA+LSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCQAPNFVALRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLAGRSADRRLAE 300 GTGHPGGIGTIHAGTALGALRR+EQLIQEAV+TVPRALIAETI L AVLAGR +DRRL E Sbjct: 241 GTGHPGGIGTIHAGTALGALRRMEQLIQEAVVTVPRALIAETIQLAAVLAGRGSDRRLTE 300 Query: 301 LALISGLSASGDYNLSSAGD 320 LA + GL GDY L +AGD Sbjct: 301 LAQVEGLGPDGDYVLKAAGD 320 >ref|YP_001415658.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] gb|ABS66001.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] Length = 327 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 267/315 (84%), Positives = 287/315 (91%) Query: 1 MAIHSIQSEASSRGARMLRSALGSAIAGYLEDEAIIEVMLNPDGRLWIDRLSNGLIDTGE 60 MA+ QSEA RGARMLR+ALG AIAG+LED +I+EVMLNPDGRLWIDRLS GL DTGE Sbjct: 1 MAVSHQQSEAILRGARMLRTALGPAIAGFLEDPSIVEVMLNPDGRLWIDRLSEGLSDTGE 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAV 120 LS ADGERIVRLVAHHVGAEVH+G+PRVSAELP TGERFEGLLPPVVAAPAFAIRKPA+ Sbjct: 61 RLSPADGERIVRLVAHHVGAEVHSGSPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAI 120 Query: 121 AVFTLDDYVARRIMTSEQAKTLQNAVAARKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTL DYVA IM++EQA+ L+ AVA R+NILVAGGTSTGKTTLTNALLAEV+KT DRV Sbjct: 121 AVFTLADYVAAEIMSAEQAEILRRAVADRRNILVAGGTSTGKTTLTNALLAEVSKTFDRV 180 Query: 181 VLIEDTRELQCRAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 VLIEDTRELQC APNLVA+RTKDGVA+LSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLAGRSADRRLAE 300 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVL+GR + RRLAE Sbjct: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLSGRGSTRRLAE 300 Query: 301 LALISGLSASGDYNL 315 LA + GL GDY + Sbjct: 301 LARVEGLQPDGDYRV 315