BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0017.p         (108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782929.1| conjugal transfer protein TrbC [Rhodopseudomona...   113   1e-23
ref|YP_004109589.1| conjugal transfer protein TrbC [Rhodopseudom...   108   2e-22
ref|YP_533398.1| conjugal transfer protein TrbC [Rhodopseudomona...   108   2e-22
ref|NP_949459.1| conjugal transfer protein TrbC [Rhodopseudomona...   107   7e-22
ref|YP_533745.1| conjugal transfer protein TrbC [Rhodopseudomona...   105   2e-21

>ref|YP_782929.1| conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisA53]
 gb|ABJ07949.1| Conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisA53]
          Length = 109

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 8/83 (9%)

Query: 1  MRQQFHFLR-----GASTAAFVAVLVASPPAWAAGSNMPWEQPLNQILQSVEGPVAKIIA 55
          M Q  H +R       +T AFV +   S  AWAAGSNMPWEQPLNQILQSVEGPVAKI+A
Sbjct: 1  MNQSLHQVRRHAFTAVTTGAFVLI---SGSAWAAGSNMPWEQPLNQILQSVEGPVAKILA 57

Query: 56 VIIIVVTGLTLAFGDSSGGFRRL 78
          VIII+VTGLTLAFGD+SGGFRRL
Sbjct: 58 VIIIIVTGLTLAFGDTSGGFRRL 80


>ref|YP_004109589.1| conjugal transfer protein TrbC [Rhodopseudomonas palustris DX-1]
 gb|ADU44856.1| Conjugal transfer protein TrbC [Rhodopseudomonas palustris DX-1]
          Length = 109

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 1/75 (1%)

Query: 5  FHFLRGASTAAFVAVLV-ASPPAWAAGSNMPWEQPLNQILQSVEGPVAKIIAVIIIVVTG 63
          F   R A   A  AVLV  + PA AAGS+MPWEQPLNQILQSVEGPVAKI+AVIII+VTG
Sbjct: 6  FRSFRPAGLCAVTAVLVQMTNPALAAGSSMPWEQPLNQILQSVEGPVAKILAVIIIIVTG 65

Query: 64 LTLAFGDSSGGFRRL 78
          LTLAFGD+SGGFRRL
Sbjct: 66 LTLAFGDTSGGFRRL 80


>ref|YP_533398.1| conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisB18]
 gb|ABD89079.1| Conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisB18]
          Length = 114

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 60/69 (86%)

Query: 10 GASTAAFVAVLVASPPAWAAGSNMPWEQPLNQILQSVEGPVAKIIAVIIIVVTGLTLAFG 69
          G +T   V   + + PAWAAGS+MPWEQPLNQILQSVEGPVAKI+AVIII+VTGLTLAFG
Sbjct: 17 GFTTLTTVLASLTAAPAWAAGSSMPWEQPLNQILQSVEGPVAKIMAVIIIIVTGLTLAFG 76

Query: 70 DSSGGFRRL 78
          D+SGGFRRL
Sbjct: 77 DTSGGFRRL 85


>ref|NP_949459.1| conjugal transfer protein TrbC [Rhodopseudomonas palustris
          CGA009]
 emb|CAE29564.1| conjugal transfer protein trbC [Rhodopseudomonas palustris
          CGA009]
          Length = 114

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 61/72 (84%), Gaps = 2/72 (2%)

Query: 9  RGASTAAFVAVLVASP--PAWAAGSNMPWEQPLNQILQSVEGPVAKIIAVIIIVVTGLTL 66
          R A+ A+   +L   P   AWAAGS+MPWEQPLNQILQSVEGPVAKI+AVIII+VTGLTL
Sbjct: 14 RTAAFASLTTILTTWPGATAWAAGSSMPWEQPLNQILQSVEGPVAKIMAVIIIIVTGLTL 73

Query: 67 AFGDSSGGFRRL 78
          AFGD+SGGFRRL
Sbjct: 74 AFGDTSGGFRRL 85


>ref|YP_533745.1| conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisB18]
 gb|ABD89426.1| Conjugal transfer protein TrbC [Rhodopseudomonas palustris
          BisB18]
          Length = 109

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 60/73 (82%), Gaps = 3/73 (4%)

Query: 6  HFLRGASTAAFVAVLVASPPAWAAGSNMPWEQPLNQILQSVEGPVAKIIAVIIIVVTGLT 65
          H +   +TA F  +   S   WAAGSNMPWEQPL+QILQSVEGPVAKI+AVIII+VTGLT
Sbjct: 11 HAVTAVTTAPFALI---SGSVWAAGSNMPWEQPLSQILQSVEGPVAKILAVIIIIVTGLT 67

Query: 66 LAFGDSSGGFRRL 78
          LAFGD+SGGFRRL
Sbjct: 68 LAFGDTSGGFRRL 80