BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0016.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106943.1| P-type conjugative transfer ATPase TrbB [Rho... 580 e-163 ref|ZP_08627040.1| conjugative transfer protein TrbB [Bradyrhizo... 540 e-151 ref|YP_001415658.1| P-type conjugative transfer ATPase TrbB [Xan... 535 e-150 ref|YP_001417774.1| P-type conjugative transfer ATPase TrbB [Xan... 531 e-149 ref|YP_533746.1| type II secretion system protein E [Rhodopseudo... 530 e-149 >ref|YP_004106943.1| P-type conjugative transfer ATPase TrbB [Rhodopseudomonas palustris DX-1] gb|ADU42210.1| P-type conjugative transfer ATPase TrbB [Rhodopseudomonas palustris DX-1] Length = 324 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 294/317 (92%), Positives = 303/317 (95%) Query: 4 HSFQSEANSRGARMLRSALGPAIAGYLEDQSIIEVMLNPDGRLWIDRLSHGLTDTGETLS 63 HS QSEANSRGARMLRSALG AIAGYLED++IIEVMLNPDGRLWIDRLS GL DTG+TLS Sbjct: 8 HSIQSEANSRGARMLRSALGTAIAGYLEDEAIIEVMLNPDGRLWIDRLSSGLIDTGKTLS 67 Query: 64 AADGERIVRLVAHHVGAEVHAGAPRVSAELPETGERFEGLVPPVVAAPAFAIRKPAVAVF 123 AADGERIVRLVAHHVGAEVHAGAPRVSAELP TGERFEGL+PPVVAAPAFAIRKPAVAVF Sbjct: 68 AADGERIVRLVAHHVGAEVHAGAPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVF 127 Query: 124 TLDDYVVKEIMTSEQANILKSAVASRKNILVAGGTSTGKTTLTNALLAEVAKTSDRVVLI 183 TLDDYV KEIMTSEQA ILKSAVA+RKNILVAGGTSTGKTTLTNALLAEVAKT+DRVVLI Sbjct: 128 TLDDYVAKEIMTSEQAEILKSAVAARKNILVAGGTSTGKTTLTNALLAEVAKTADRVVLI 187 Query: 184 EDTRELQCKAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAWGTG 243 EDTRELQC APNLVALRT DGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAWGTG Sbjct: 188 EDTRELQCTAPNLVALRTNDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAWGTG 247 Query: 244 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINLVAVLAGRGADRRLAELAL 303 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIN++AVLAGRGADRRL ELAL Sbjct: 248 HPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINVIAVLAGRGADRRLVELAL 307 Query: 304 VTGLGPAGDYDLSSTGD 320 V GLG AGDY LS+ GD Sbjct: 308 VRGLGAAGDYSLSTAGD 324 >ref|ZP_08627040.1| conjugative transfer protein TrbB [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10320.1| conjugative transfer protein TrbB [Bradyrhizobiaceae bacterium SG-6C] Length = 304 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 273/304 (89%), Positives = 286/304 (94%) Query: 17 MLRSALGPAIAGYLEDQSIIEVMLNPDGRLWIDRLSHGLTDTGETLSAADGERIVRLVAH 76 ML+SALG AIAGYL+D +I+EV+LNPDGRLWIDRLS GLTDTGETLSAADGERIVRLVAH Sbjct: 1 MLKSALGAAIAGYLDDDAIVEVLLNPDGRLWIDRLSSGLTDTGETLSAADGERIVRLVAH 60 Query: 77 HVGAEVHAGAPRVSAELPETGERFEGLVPPVVAAPAFAIRKPAVAVFTLDDYVVKEIMTS 136 HVGAEVHAG+PRVSAELP TGERFEGL+PPVVAAPAFAIRKPAVAVFTLDDYV +MTS Sbjct: 61 HVGAEVHAGSPRVSAELPGTGERFEGLLPPVVAAPAFAIRKPAVAVFTLDDYVAAGVMTS 120 Query: 137 EQANILKSAVASRKNILVAGGTSTGKTTLTNALLAEVAKTSDRVVLIEDTRELQCKAPNL 196 QA L+SAVA+RKNILVAGGTSTGKTTLTNALLAEVAK+SDRVVLIEDTRELQCKAPNL Sbjct: 121 GQAKTLRSAVAARKNILVAGGTSTGKTTLTNALLAEVAKSSDRVVLIEDTRELQCKAPNL 180 Query: 197 VALRTKDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAWGTGHPGGIGTIHAGTA 256 VALRTKDGVATLSDLVRSSLRLRPDRIP+GEVRGAEALDLLKAWGTGHPGGIGTIHAGTA Sbjct: 181 VALRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHAGTA 240 Query: 257 LGALRRLEQLIQEAVITVPRALIAETINLVAVLAGRGADRRLAELALVTGLGPAGDYDLS 316 LGALRRLEQLIQEAVITVPRALIAETINL+AVL GRG DRRLAELA VTGLG GDY LS Sbjct: 241 LGALRRLEQLIQEAVITVPRALIAETINLIAVLTGRGTDRRLAELAFVTGLGAVGDYGLS 300 Query: 317 STGD 320 GD Sbjct: 301 PAGD 304 >ref|YP_001415658.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] gb|ABS66001.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] Length = 327 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 271/318 (85%), Positives = 293/318 (92%) Query: 1 VAIHSFQSEANSRGARMLRSALGPAIAGYLEDQSIIEVMLNPDGRLWIDRLSHGLTDTGE 60 +A+ QSEA RGARMLR+ALGPAIAG+LED SI+EVMLNPDGRLWIDRLS GL+DTGE Sbjct: 1 MAVSHQQSEAILRGARMLRTALGPAIAGFLEDPSIVEVMLNPDGRLWIDRLSEGLSDTGE 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPETGERFEGLVPPVVAAPAFAIRKPAV 120 LS ADGERIVRLVAHHVGAEVH+G+PRVSAELPETGERFEGL+PPVVAAPAFAIRKPA+ Sbjct: 61 RLSPADGERIVRLVAHHVGAEVHSGSPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAI 120 Query: 121 AVFTLDDYVVKEIMTSEQANILKSAVASRKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTL DYV EIM++EQA IL+ AVA R+NILVAGGTSTGKTTLTNALLAEV+KT DRV Sbjct: 121 AVFTLADYVAAEIMSAEQAEILRRAVADRRNILVAGGTSTGKTTLTNALLAEVSKTFDRV 180 Query: 181 VLIEDTRELQCKAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAW 240 VLIEDTRELQC APNLVA+RTKDGVA+LSDLVRSSLRLRPDRIP+GEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINLVAVLAGRGADRRLAE 300 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETI+LVAVL+GRG+ RRLAE Sbjct: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETIDLVAVLSGRGSTRRLAE 300 Query: 301 LALVTGLGPAGDYDLSST 318 LA V GL P GDY + T Sbjct: 301 LARVEGLQPDGDYRVIPT 318 >ref|YP_001417774.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] gb|ABS68117.1| P-type conjugative transfer ATPase TrbB [Xanthobacter autotrophicus Py2] Length = 327 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 268/313 (85%), Positives = 290/313 (92%) Query: 1 VAIHSFQSEANSRGARMLRSALGPAIAGYLEDQSIIEVMLNPDGRLWIDRLSHGLTDTGE 60 +A+ QSEA RGARMLR+ALGPAIAG+LED SI+EVMLNPDGRLWIDRLS GL+DTG Sbjct: 1 MAVSHQQSEAILRGARMLRTALGPAIAGFLEDPSIVEVMLNPDGRLWIDRLSEGLSDTGA 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPETGERFEGLVPPVVAAPAFAIRKPAV 120 LS ADGERIVRLVAHHVGAEVH+G+PRVSAELPETGERFEGL+PPVVAAPAFAIRKPAV Sbjct: 61 RLSPADGERIVRLVAHHVGAEVHSGSPRVSAELPETGERFEGLLPPVVAAPAFAIRKPAV 120 Query: 121 AVFTLDDYVVKEIMTSEQANILKSAVASRKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTL DYV EIM++EQA +L+ AVA R+NILVAGGTSTGKTTLTNALLAEV+KT DRV Sbjct: 121 AVFTLADYVAAEIMSAEQAEVLRRAVADRRNILVAGGTSTGKTTLTNALLAEVSKTFDRV 180 Query: 181 VLIEDTRELQCKAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAW 240 VLIEDTRELQC APNLVA+RTKDGVA+LSDLVRSSLRLRPDRIP+GEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINLVAVLAGRGADRRLAE 300 GTGHPGGIGTIHAGTALGALRRLEQLIQEAV+TVPRALIAETI+LVAVL+GRG+ RRLAE Sbjct: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGSTRRLAE 300 Query: 301 LALVTGLGPAGDY 313 LA V GL P GDY Sbjct: 301 LARVEGLQPDGDY 313 >ref|YP_533746.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] gb|ABD89427.1| type II secretion system protein E [Rhodopseudomonas palustris BisB18] Length = 322 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/320 (83%), Positives = 287/320 (89%) Query: 1 VAIHSFQSEANSRGARMLRSALGPAIAGYLEDQSIIEVMLNPDGRLWIDRLSHGLTDTGE 60 +AIH EA SRGARMLR+ALGP+IA +LED ++EVMLNPDGRLWIDRL+ GL DTGE Sbjct: 1 MAIHHLNHEATSRGARMLRTALGPSIALWLEDAEVVEVMLNPDGRLWIDRLAVGLVDTGE 60 Query: 61 TLSAADGERIVRLVAHHVGAEVHAGAPRVSAELPETGERFEGLVPPVVAAPAFAIRKPAV 120 LSA DGERIVRLVAHHVG EVH+ +PRVSAELPETGERFEGL+PPVVAAP FAIRKPAV Sbjct: 61 RLSARDGERIVRLVAHHVGVEVHSASPRVSAELPETGERFEGLLPPVVAAPTFAIRKPAV 120 Query: 121 AVFTLDDYVVKEIMTSEQANILKSAVASRKNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 AVFTLDDY IMT+ QA L++AVA R+NILVAGGTSTGKTTLTNALLAEVAKTSDRV Sbjct: 121 AVFTLDDYAAAGIMTACQAETLRAAVAERRNILVAGGTSTGKTTLTNALLAEVAKTSDRV 180 Query: 181 VLIEDTRELQCKAPNLVALRTKDGVATLSDLVRSSLRLRPDRIPVGEVRGAEALDLLKAW 240 VLIEDTRELQC+APN VALRTKDGVA+LSDLVRSSLRLRPDRIP+GEVRGAEALDLLKAW Sbjct: 181 VLIEDTRELQCQAPNFVALRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW 240 Query: 241 GTGHPGGIGTIHAGTALGALRRLEQLIQEAVITVPRALIAETINLVAVLAGRGADRRLAE 300 GTGHPGGIGTIHAGTALGALRR+EQLIQEAV+TVPRALIAETI L AVLAGRG+DRRL E Sbjct: 241 GTGHPGGIGTIHAGTALGALRRMEQLIQEAVVTVPRALIAETIQLAAVLAGRGSDRRLTE 300 Query: 301 LALVTGLGPAGDYDLSSTGD 320 LA V GLGP GDY L + GD Sbjct: 301 LAQVEGLGPDGDYVLKAAGD 320