BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0011.p (422 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106940.1| TRAG family protein [Rhodopseudomonas palust... 680 0.0 ref|ZP_08627043.1| type IV secretion system protein VirD4 [Brady... 639 0.0 ref|ZP_08664723.1| conjugal transfer coupling protein TraG [Para... 585 e-165 ref|YP_673083.1| TRAG protein [Mesorhizobium sp. BNC1] >gi|11028... 576 e-162 ref|YP_676381.1| TRAG protein [Mesorhizobium sp. BNC1] >gi|11028... 556 e-156 >ref|YP_004106940.1| TRAG family protein [Rhodopseudomonas palustris DX-1] gb|ADU42207.1| TRAG family protein [Rhodopseudomonas palustris DX-1] Length = 662 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/383 (89%), Positives = 346/383 (90%), Gaps = 20/383 (5%) Query: 12 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRRCDWRIADLIX 71 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVT Sbjct: 296 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVT------------ 343 Query: 72 VVAQVTCRCDWRIADLIADSHPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHACD 131 CRCDWRIADLIAD PTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHA D Sbjct: 344 ------CRCDWRIADLIADGRPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHARD 397 Query: 132 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 191 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH Sbjct: 398 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 457 Query: 192 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 251 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE Sbjct: 458 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 517 Query: 252 VMQLPSMDEIVMVAGTPPIRAKKVRYYEDRRFAERVLLPPDPARASRSSRTDGWSALRTL 311 VMQLP MDEIVMVAGTPPIRAKKVRYYEDRRF ERVL PP+PA A RSSRTDGWSAL L Sbjct: 518 VMQLPPMDEIVMVAGTPPIRAKKVRYYEDRRFTERVLPPPNPASAGRSSRTDGWSALGPL 577 Query: 312 KPAGGPTDKAAETEKDTANSGLRREPELPDHVAIVKETTELTPAEEFAAVLDDDEDAVRQ 371 KP GPTDKAAE E+DTANSGLRREPELPDHVAI KETTE TPAEEFAAVLDDDED VRQ Sbjct: 578 KPTAGPTDKAAEVEEDTANSGLRREPELPDHVAIAKETTEPTPAEEFAAVLDDDEDGVRQ 637 Query: 372 SRLM--QMLGVARQVAMDPNDGM 392 SRL+ QM GVARQVAMDPNDGM Sbjct: 638 SRLIRQQMRGVARQVAMDPNDGM 660 >ref|ZP_08627043.1| type IV secretion system protein VirD4 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10323.1| type IV secretion system protein VirD4 [Bradyrhizobiaceae bacterium SG-6C] Length = 662 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/383 (86%), Positives = 339/383 (88%), Gaps = 20/383 (5%) Query: 12 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRRCDWRIADLIX 71 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRR Sbjct: 296 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRR---------- 345 Query: 72 VVAQVTCRCDWRIADLIADSHPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHACD 131 CDWRIADLIAD P TLY VVPPSDISRTKPLIRLVLNQIGRRLTEDLHA D Sbjct: 346 --------CDWRIADLIADLRPMTLYFVVPPSDISRTKPLIRLVLNQIGRRLTEDLHAGD 397 Query: 132 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 191 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH Sbjct: 398 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 457 Query: 192 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 251 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE Sbjct: 458 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 517 Query: 252 VMQLPSMDEIVMVAGTPPIRAKKVRYYEDRRFAERVLLPPDPARASRSSRTDGWSALRTL 311 VMQLP DEI+MVAGTPPIRAKKVRYYEDRRF ERVL PPDPA + RSSRTDGWS L TL Sbjct: 518 VMQLPPRDEIIMVAGTPPIRAKKVRYYEDRRFTERVLPPPDPAASGRSSRTDGWSTLGTL 577 Query: 312 KPAGGPTDKAAETEKDTANSGLRREPELPDHVAIVKETTELTPAEEFAAVLDDDEDAVRQ 371 KPA TD+A + +DTANSGLRREPELPDHVAIVKETTE TP EEF+ VLDDDEDAVRQ Sbjct: 578 KPAPHSTDRAEQAGEDTANSGLRREPELPDHVAIVKETTEPTPTEEFSVVLDDDEDAVRQ 637 Query: 372 SRL--MQMLGVARQVAMDPNDGM 392 SRL QM GVARQVAMDPNDGM Sbjct: 638 SRLRRQQMRGVARQVAMDPNDGM 660 >ref|ZP_08664723.1| conjugal transfer coupling protein TraG [Paracoccus sp. TRP] Length = 663 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 292/384 (76%), Positives = 320/384 (83%), Gaps = 21/384 (5%) Query: 12 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRRCDWRIADLIX 71 LGE G HPV+ASTARELLNKS+NERSGVLSTAMSFLGLYRDPVVA+VTRRC Sbjct: 296 LGEAGPHPVIASTARELLNKSDNERSGVLSTAMSFLGLYRDPVVAEVTRRC--------- 346 Query: 72 VVAQVTCRCDWRIADLIADSHPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHACD 131 DWRIADLI D+ P TLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLH Sbjct: 347 ---------DWRIADLIEDARPATLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHTKA 397 Query: 132 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 191 RRHRVLMMLDEFPALGRLDFFESALAFMAGYG+K+FLIAQSLNQIEKAYG NN+ILDNCH Sbjct: 398 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGMKAFLIAQSLNQIEKAYGANNSILDNCH 457 Query: 192 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 251 VRVSFATNDERTAKRVSDALGTATEM+AMKNYAGHRL+PWLGHLMVSR ETARPLLTPGE Sbjct: 458 VRVSFATNDERTAKRVSDALGTATEMKAMKNYAGHRLSPWLGHLMVSRSETARPLLTPGE 517 Query: 252 VMQLPSMDEIVMVAGTPPIRAKKVRYYEDRRFAERVLLPPDPARASRSSRTDGWSALRTL 311 +MQLP DEIVM+A TPPIRA K RY+ED+RF ERVL PPDPA+ SR++R D W+ L+ Sbjct: 518 IMQLPPNDEIVMLAATPPIRANKARYFEDKRFVERVLPPPDPAKTSRTTRKDAWTELKPQ 577 Query: 312 KPAGGPTDKAAETEKDTANSGLRREPELPDHVAIVKETTELTPAEEFAAVLDDD-EDAVR 370 P + + E+D ANSGLRREPELPDHVAIVKETT+ PA+EF A+LDD+ EDA R Sbjct: 578 APDAALLAEIQKAEQDAANSGLRREPELPDHVAIVKETTDPNPADEFKALLDDEPEDAAR 637 Query: 371 QSRLM--QMLGVARQVAMDPNDGM 392 Q + + M G+ARQVAMDPND M Sbjct: 638 QRQALRRHMTGIARQVAMDPNDNM 661 >ref|YP_673083.1| TRAG protein [Mesorhizobium sp. BNC1] gb|ABG61918.1| TRAG protein [Chelativorans sp. BNC1] Length = 662 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 298/386 (77%), Positives = 320/386 (82%), Gaps = 26/386 (6%) Query: 12 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRRCDWRIADLIX 71 LG G HPVVASTARELLNKS+NERSGVLSTAMSFLGLYRDPVVA+VTRRC Sbjct: 296 LGLGGPHPVVASTARELLNKSDNERSGVLSTAMSFLGLYRDPVVAEVTRRC--------- 346 Query: 72 VVAQVTCRCDWRIADLIADSHPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHACD 131 DWRIADLIAD P TLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHA D Sbjct: 347 ---------DWRIADLIADEKPATLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHARD 397 Query: 132 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 191 RRHRVLMMLDEFPALGRLDFFESALAFMAGYG+KSFLIAQSLNQIEKAYGPNNAILDNCH Sbjct: 398 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGLKSFLIAQSLNQIEKAYGPNNAILDNCH 457 Query: 192 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 251 VRVSFATNDERTAKRVSDALGTATEM+AM+NYAGHRL+PWLGHLMVSR ETARPLLTPGE Sbjct: 458 VRVSFATNDERTAKRVSDALGTATEMKAMRNYAGHRLSPWLGHLMVSRSETARPLLTPGE 517 Query: 252 VMQLPSMDEIVMVAGTPPIRAKKVRYYEDRRFAERVLLPPDPARASRSSRTDGWSALRTL 311 VMQLP+ DEIVM AG PIRAKK RY+EDRRF ER+L PDPA+ RS+R D WS L+ Sbjct: 518 VMQLPATDEIVMAAGVHPIRAKKARYFEDRRFKERILPSPDPAKCGRSARRDAWSELKPQ 577 Query: 312 KPAGGPTDKAAETEK--DTANSGLRREPELPDHVAIVKETTELTPAEEFAAVLDDD-EDA 368 +P AAE +K D AN GLRREPELPDHVAI KETT A+EF+ +LDD+ EDA Sbjct: 578 RP---DALLAAELDKAEDAANGGLRREPELPDHVAIAKETTGPAAADEFSIMLDDEPEDA 634 Query: 369 VRQSRLM--QMLGVARQVAMDPNDGM 392 RQ + + QM GVARQVA+DPNDG+ Sbjct: 635 ARQRQALRQQMRGVARQVALDPNDGI 660 >ref|YP_676381.1| TRAG protein [Mesorhizobium sp. BNC1] gb|ABG65216.1| TRAG protein [Chelativorans sp. BNC1] Length = 664 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 283/385 (73%), Positives = 310/385 (80%), Gaps = 22/385 (5%) Query: 12 LGEQGAHPVVASTARELLNKSENERSGVLSTAMSFLGLYRDPVVAQVTRRCDWRIADLIX 71 LGE+G HPVVAS ARELLNKS+NERSGVLSTAMSFLGLYRDPVVA VTRRC Sbjct: 296 LGEKGPHPVVASAARELLNKSDNERSGVLSTAMSFLGLYRDPVVAHVTRRC--------- 346 Query: 72 VVAQVTCRCDWRIADLIADSHPTTLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLHACD 131 DWRIADL++ P +LYLVVPPSDISRTKPLIRLVLNQIGRRLTEDL+A D Sbjct: 347 ---------DWRIADLVSGERPASLYLVVPPSDISRTKPLIRLVLNQIGRRLTEDLNAKD 397 Query: 132 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGPNNAILDNCH 191 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYG NN+ILDNCH Sbjct: 398 RRHRVLMMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGQNNSILDNCH 457 Query: 192 VRVSFATNDERTAKRVSDALGTATEMRAMKNYAGHRLNPWLGHLMVSRQETARPLLTPGE 251 VRVSFATNDERTAKR+SDALGTATE++AM+NYAGHRL PWLGHLMVSR ETAR LLTPGE Sbjct: 458 VRVSFATNDERTAKRISDALGTATELKAMQNYAGHRLAPWLGHLMVSRSETARQLLTPGE 517 Query: 252 VMQLPSMDEIVMVAGTPPIRAKKVRYYEDRRFAERVLLPPDPARASRSSRTDGWSALRTL 311 VMQLP DEIVM+AG+PPIRA K RY+ED RF ERVL PPDP R S DGWS L Sbjct: 518 VMQLPPDDEIVMIAGSPPIRATKARYFEDVRFTERVLQPPDPTTEQRVSLADGWSELEPR 577 Query: 312 KPAGGPTDKAAETEKDTANSGLRREPELPDHVAIVKETTELTPAEEFAAVLDDDEDAVRQ 371 KP + + E+D AN+GLRREPELP HV IV +TTE TP EFA V D+ ED +RQ Sbjct: 578 KPDAVLLAEVDKAEQDRANAGLRREPELPQHVEIVHDTTEPTPEREFALVEDNAEDRLRQ 637 Query: 372 SRLM----QMLGVARQVAMDPNDGM 392 ++ QM GVARQV+M+P++GM Sbjct: 638 AQNQALRRQMRGVARQVSMNPDEGM 662