BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0010.p         (244 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004106940.1| TRAG family protein [Rhodopseudomonas palust...   307   1e-81
ref|ZP_08627043.1| type IV secretion system protein VirD4 [Brady...   299   2e-79
ref|YP_001415660.1| conjugal transfer coupling protein TraG [Xan...   294   8e-78
ref|YP_003547155.1| conjugal transfer protein TraG [Sphingobium ...   293   2e-77
ref|YP_001417772.1| conjugal transfer coupling protein TraG [Xan...   290   2e-76

>ref|YP_004106940.1| TRAG family protein [Rhodopseudomonas palustris DX-1]
 gb|ADU42207.1| TRAG family protein [Rhodopseudomonas palustris DX-1]
          Length = 662

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/155 (95%), Positives = 151/155 (97%)

Query: 4   AYAPQIFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVETYGSARWANGDEVRAAGLLG 63
           AYAP++FVEGAFIAASGTFVSIAVAIGMSVWRAREAKNV TYGSARWA  DEVRAAGLLG
Sbjct: 66  AYAPRVFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVATYGSARWAGADEVRAAGLLG 125

Query: 64  PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 123
           PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL
Sbjct: 126 PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 185

Query: 124 TAGFRSRHGRVLLFDPTNPRSSTYNPLLEVRRGEW 158
           TAGFRSRHGRVLLFDPTNP+SS YNPLLEVRRGEW
Sbjct: 186 TAGFRSRHGRVLLFDPTNPKSSAYNPLLEVRRGEW 220


>ref|ZP_08627043.1| type IV secretion system protein VirD4 [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP10323.1| type IV secretion system protein VirD4 [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 662

 Score =  299 bits (765), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 148/155 (95%)

Query: 4   AYAPQIFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVETYGSARWANGDEVRAAGLLG 63
           AYAP +F EGAFIAASGTF+SIAVAIGMSVWRAREAKNVETYGSARWA+  EV+AAGLLG
Sbjct: 66  AYAPDVFFEGAFIAASGTFISIAVAIGMSVWRAREAKNVETYGSARWADAREVKAAGLLG 125

Query: 64  PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 123
            DGVVLGKLD DYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL
Sbjct: 126 VDGVVLGKLDDDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 185

Query: 124 TAGFRSRHGRVLLFDPTNPRSSTYNPLLEVRRGEW 158
           TAGFRSRHGRVLLFDPTNPRSS YNPLLEVRRGEW
Sbjct: 186 TAGFRSRHGRVLLFDPTNPRSSAYNPLLEVRRGEW 220


>ref|YP_001415660.1| conjugal transfer coupling protein TraG [Xanthobacter autotrophicus
           Py2]
 gb|ABS66003.1| TRAG family protein [Xanthobacter autotrophicus Py2]
          Length = 661

 Score =  294 bits (752), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 140/155 (90%), Positives = 146/155 (94%)

Query: 4   AYAPQIFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVETYGSARWANGDEVRAAGLLG 63
           AYAP +FVEGA+IAASG F++IAVAIGMSVWRAREAKNVETYGSARWA  DEVRAAGLLG
Sbjct: 66  AYAPHVFVEGAYIAASGGFIAIAVAIGMSVWRAREAKNVETYGSARWARADEVRAAGLLG 125

Query: 64  PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 123
           PDGVVLGK DR YLRHDGPEHVLCFAPTRSGKGVGLVVPSLL WPGSAIVHDIKGENWQL
Sbjct: 126 PDGVVLGKFDRAYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKGENWQL 185

Query: 124 TAGFRSRHGRVLLFDPTNPRSSTYNPLLEVRRGEW 158
           TAGFR+RHGRVLLFDPTN +SS YNPLLEVRRGEW
Sbjct: 186 TAGFRARHGRVLLFDPTNAKSSAYNPLLEVRRGEW 220


>ref|YP_003547155.1| conjugal transfer protein TraG [Sphingobium japonicum UT26S]
 dbj|BAI99132.1| conjugal transfer protein TraG [Sphingobium japonicum UT26S]
          Length = 667

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/155 (90%), Positives = 147/155 (94%)

Query: 4   AYAPQIFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVETYGSARWANGDEVRAAGLLG 63
           AYAP IFVEGA+IAASG F+SIAVAIGMSVWRAREAKNVETYGSARWA  DEV+AAGLLG
Sbjct: 66  AYAPPIFVEGAYIAASGGFISIAVAIGMSVWRAREAKNVETYGSARWARPDEVKAAGLLG 125

Query: 64  PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 123
            DGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLL WPGSAIVHDIKGENW L
Sbjct: 126 ADGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKGENWTL 185

Query: 124 TAGFRSRHGRVLLFDPTNPRSSTYNPLLEVRRGEW 158
           TAGFR+RHGRVLLFDPTNP+S+ YNPLLEVRRGEW
Sbjct: 186 TAGFRARHGRVLLFDPTNPKSAAYNPLLEVRRGEW 220


>ref|YP_001417772.1| conjugal transfer coupling protein TraG [Xanthobacter autotrophicus
           Py2]
 gb|ABS68115.1| TRAG family protein [Xanthobacter autotrophicus Py2]
          Length = 662

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/155 (88%), Positives = 146/155 (94%)

Query: 4   AYAPQIFVEGAFIAASGTFVSIAVAIGMSVWRAREAKNVETYGSARWANGDEVRAAGLLG 63
           AYAP +FVEGA+IAASG F++IAVAIGMSVWRAREAKNVETYGSARWA  DEVRAAGLLG
Sbjct: 66  AYAPSVFVEGAYIAASGGFIAIAVAIGMSVWRAREAKNVETYGSARWARADEVRAAGLLG 125

Query: 64  PDGVVLGKLDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLAWPGSAIVHDIKGENWQL 123
           PDGVVLG+ DR YLRHDGPEHVLCFAPTRSGKGVGLVVPSLL WPGSAIVHDIKGENWQL
Sbjct: 126 PDGVVLGRFDRAYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKGENWQL 185

Query: 124 TAGFRSRHGRVLLFDPTNPRSSTYNPLLEVRRGEW 158
           T+GFR++HGRVLLFDPTN +SS YNPLLEVRRGEW
Sbjct: 186 TSGFRAQHGRVLLFDPTNAKSSAYNPLLEVRRGEW 220