BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0004.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08627046.1| protease TraF [Bradyrhizobiaceae bacterium SG... 266 8e-70 ref|YP_533751.1| conjugal transfer protein [Rhodopseudomonas pal... 218 3e-55 ref|YP_782936.1| conjugal transfer protein [Rhodopseudomonas pal... 210 6e-53 ref|ZP_07025884.1| Peptidase S26, conserved region [Afipia sp. 1... 207 5e-52 ref|ZP_08664719.1| putative conjugal transfer protein precursor ... 204 3e-51 >ref|ZP_08627046.1| protease TraF [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10326.1| protease TraF [Bradyrhizobiaceae bacterium SG-6C] Length = 170 Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 131/170 (77%), Positives = 141/170 (82%) Query: 1 MTDRLWTLTTTFAVASAVVATIALEPLPIYIWNASASVPIGLYGLRPAKRFLVTELVAVQ 60 MT R TLT A+A+VA I LE P YIWNAS S+PIGLY ++P VTELVAVQ Sbjct: 1 MTSRFKTLTAMLGGAAALVAPIVLEITPAYIWNASESIPIGLYRVQPPDNLFVTELVAVQ 60 Query: 61 PPEPLATFLDFNGYLPLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPL 120 PPEPLATFLD NGYLP GVPMLKRVLALPGQTVCRSG +SVD I +GEARDRDGRGRPL Sbjct: 61 PPEPLATFLDLNGYLPTGVPMLKRVLALPGQTVCRSGLTVSVDTIEMGEARDRDGRGRPL 120 Query: 121 PKWQGCRVVRDGELFVMNWQSVDSLDGRYFGLLPASAVIGRAIPVWTWED 170 PKWQGCRVV +GELFVMNWQS +SLDGRYFG LPASAVIGRA+PVWTWED Sbjct: 121 PKWQGCRVVGEGELFVMNWQSANSLDGRYFGFLPASAVIGRALPVWTWED 170 >ref|YP_533751.1| conjugal transfer protein [Rhodopseudomonas palustris BisB18] gb|ABD89432.1| TraF peptidase. Serine peptidase. MEROPS family S26C [Rhodopseudomonas palustris BisB18] Length = 171 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 105/170 (61%), Positives = 130/170 (76%) Query: 1 MTDRLWTLTTTFAVASAVVATIALEPLPIYIWNASASVPIGLYGLRPAKRFLVTELVAVQ 60 M R T TT + A+ ++ ++ + ++IWNAS SVP+GLY LRP ++ VTELVAVQ Sbjct: 1 MKARKVTFLTTLSAAAILLVSMGEQTPKLFIWNASESVPVGLYRLRPIRKLAVTELVAVQ 60 Query: 61 PPEPLATFLDFNGYLPLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPL 120 PPEPLA FL GYLP G+PMLKRVLALPGQTVCR+ ISVDDIA+GEA +RD R R L Sbjct: 61 PPEPLAKFLSEGGYLPRGIPMLKRVLALPGQTVCRNHLLISVDDIALGEALERDRRDRSL 120 Query: 121 PKWQGCRVVRDGELFVMNWQSVDSLDGRYFGLLPASAVIGRAIPVWTWED 170 P WQGC VV +GE+F+MN QS DSLDGRYFG+ PA+A++GRA P+WT E+ Sbjct: 121 PVWQGCHVVAEGEVFLMNLQSADSLDGRYFGVTPATAILGRAEPLWTKEE 170 >ref|YP_782936.1| conjugal transfer protein [Rhodopseudomonas palustris BisA53] gb|ABJ07956.1| TraF peptidase. Serine peptidase. MEROPS family S26C [Rhodopseudomonas palustris BisA53] Length = 171 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 102/170 (60%), Positives = 128/170 (75%) Query: 1 MTDRLWTLTTTFAVASAVVATIALEPLPIYIWNASASVPIGLYGLRPAKRFLVTELVAVQ 60 M R T TT + + + ++ + +IWNAS SVP+GLY LR ++ VT+LVAVQ Sbjct: 1 MKRRALTCLTTLSAVAILWVSLGEQSPKQFIWNASESVPVGLYRLRAIRKLAVTDLVAVQ 60 Query: 61 PPEPLATFLDFNGYLPLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPL 120 PPEPLATFL GYLP G+PMLKRVLALPGQTVCR+ I+VDDIA+GEA +RD RGR L Sbjct: 61 PPEPLATFLSEGGYLPRGIPMLKRVLALPGQTVCRNHLLITVDDIALGEALERDRRGRSL 120 Query: 121 PKWQGCRVVRDGELFVMNWQSVDSLDGRYFGLLPASAVIGRAIPVWTWED 170 P WQGC V+ +GE+F+MNWQS DSLDGRYFG+ A+A++GRA P+WT E+ Sbjct: 121 PVWQGCHVIGEGEVFLMNWQSADSLDGRYFGVTLATAILGRADPLWTKEE 170 >ref|ZP_07025884.1| Peptidase S26, conserved region [Afipia sp. 1NLS2] gb|EFI53026.1| Peptidase S26, conserved region [Afipia sp. 1NLS2] Length = 170 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 107/170 (62%), Positives = 127/170 (74%), Gaps = 1/170 (0%) Query: 1 MTDRLWTLTTTFAVASAVVATIALEPLPIYIWNASASVPIGLYGLRPAKRFLVTELVAVQ 60 MT + +TT FA + + A+ PLP IWNASASVPIGLY + PA VTELV VQ Sbjct: 1 MTRFGYVMTTYFA-SLCIGASALFHPLPRLIWNASASVPIGLYAVHPAGVLHVTELVVVQ 59 Query: 61 PPEPLATFLDFNGYLPLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPL 120 PPE LA+FLD YLP GVPMLKRVLALP QTVCR+ AI+VD IA+G+A +RD GRPL Sbjct: 60 PPEALASFLDERRYLPRGVPMLKRVLALPRQTVCRTDRAIAVDGIAMGDALNRDRSGRPL 119 Query: 121 PKWQGCRVVRDGELFVMNWQSVDSLDGRYFGLLPASAVIGRAIPVWTWED 170 P WQGCR + GE+F+MNWQS DSLDGRYFGLLP + ++GRA P+WT E+ Sbjct: 120 PVWQGCRRIPAGEVFLMNWQSEDSLDGRYFGLLPVTTIVGRADPLWTREE 169 >ref|ZP_08664719.1| putative conjugal transfer protein precursor [Paracoccus sp. TRP] Length = 181 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/170 (61%), Positives = 123/170 (72%), Gaps = 1/170 (0%) Query: 1 MTDRLWTLTTTFAVASAVVATIALEPLPIYIWNASASVPIGLYGLRPAKRFLVTELVAVQ 60 MTD W + T F +SA+ T ++ IWNASAS PIG Y + PAKR VT+LVAV Sbjct: 1 MTDLKWAMAT-FVASSAIAVTTWIDAPTKLIWNASASTPIGFYSVEPAKRLEVTDLVAVA 59 Query: 61 PPEPLATFLDFNGYLPLGVPMLKRVLALPGQTVCRSGPAISVDDIAVGEARDRDGRGRPL 120 PEP+A+FL GYLP P+LKRVL LPGQTVCRSG ISVD +A+G A RD RPL Sbjct: 60 APEPIASFLADGGYLPRDTPLLKRVLGLPGQTVCRSGVLISVDGVAMGTALQRDRIDRPL 119 Query: 121 PKWQGCRVVRDGELFVMNWQSVDSLDGRYFGLLPASAVIGRAIPVWTWED 170 P WQGCR+V DGE+F+MNW DSLDGRYFG +PASAVIGRA+P+WT ED Sbjct: 120 PDWQGCRIVTDGEIFLMNWDVPDSLDGRYFGPIPASAVIGRAVPLWTDED 169