BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0001.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCC55885.1| putative NopM [Sinorhizobium fredii] 536 e-150 ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium ja... 534 e-150 gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] 533 e-149 emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] 386 e-105 ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii N... 360 2e-97 >emb|CCC55885.1| putative NopM [Sinorhizobium fredii] Length = 581 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/311 (84%), Positives = 283/311 (90%) Query: 3 DNPLPDDVLANLAAVGTPPQLAQQSLYEAAAHWLAEDPATLAEWQHFADEAGAQDYARFL 62 DNPLPDDVLANLAA PPQLAQQSLYEAAAHWLA+DPATLAEWQHFADE GAQDYA+FL Sbjct: 270 DNPLPDDVLANLAAAEAPPQLAQQSLYEAAAHWLADDPATLAEWQHFADEPGAQDYAQFL 329 Query: 63 GRLRGNVNYGNDEFRQAVADDLRQAAANPRLREQFFAQASEANETCDDRVTLHWNGMQTA 122 RLRG VNYGNDEFRQ VADDLRQ AANPRLREQFFAQAS+AN +C+DRVTLHWNGMQTA Sbjct: 330 ERLRGTVNYGNDEFRQRVADDLRQTAANPRLREQFFAQASDANASCEDRVTLHWNGMQTA 389 Query: 123 RLNADVEEGVYDDRLGELIQRGRIAFRLEALDEIARDRVNLLAGDHPNVDDVEVYLAYQH 182 RLNADVE GVYDDRLGELIQRGR+AFRLEALDEIARDRVN L PN+DDVEVYLAYQH Sbjct: 390 RLNADVEGGVYDDRLGELIQRGRVAFRLEALDEIARDRVNSLLSLDPNIDDVEVYLAYQH 449 Query: 183 LLREPLELSHVAPDMSFLAVSDVSQDDAARALDLVREQEADQLNDYMAARWQPWETVLRR 242 LREPLELSHVAPDM FLAVS VS+DDA ALDL+RE+EA+Q DYMA RWQPWETVLRR Sbjct: 450 RLREPLELSHVAPDMRFLAVSHVSEDDATEALDLIREREANQFTDYMATRWQPWETVLRR 509 Query: 243 IAPDRYEAMQDRLIEAMGEEFESRLDQRLAEHGLLGDADAERVLGAQVRNEVAGEIKREV 302 IAPD + AMQDRL+EAMGEEF+SRLDQRLAEHGL+GD DAERVLGAQVRN++AGEIK EV Sbjct: 510 IAPDEHAAMQDRLVEAMGEEFQSRLDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEV 569 Query: 303 MHNVLAERGLE 313 M+ +L+ERGLE Sbjct: 570 MNRLLSERGLE 580 >ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium japonicum USDA 110] dbj|BAC47169.1| blr1904 [Bradyrhizobium japonicum USDA 110] Length = 585 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/311 (83%), Positives = 284/311 (91%) Query: 3 DNPLPDDVLANLAAVGTPPQLAQQSLYEAAAHWLAEDPATLAEWQHFADEAGAQDYARFL 62 DNPLPDDVLANLA PPQLAQQSLYEAAA WLA+DPATLA+WQHFADE GAQDYA+FL Sbjct: 274 DNPLPDDVLANLATAEAPPQLAQQSLYEAAAQWLADDPATLAKWQHFADEPGAQDYAQFL 333 Query: 63 GRLRGNVNYGNDEFRQAVADDLRQAAANPRLREQFFAQASEANETCDDRVTLHWNGMQTA 122 RLR VNYGNDEFRQAVADDL+QAAANP LREQFFAQASEAN +C+DRVTLHWNGMQTA Sbjct: 334 ERLRETVNYGNDEFRQAVADDLQQAAANPTLREQFFAQASEANASCEDRVTLHWNGMQTA 393 Query: 123 RLNADVEEGVYDDRLGELIQRGRIAFRLEALDEIARDRVNLLAGDHPNVDDVEVYLAYQH 182 RLNADVE+GVYDDRLG+LIQRGR+AFRLEALDEIARDR+N LA +PNVDD+EVYLAYQH Sbjct: 394 RLNADVEDGVYDDRLGDLIQRGRVAFRLEALDEIARDRINSLASGNPNVDDIEVYLAYQH 453 Query: 183 LLREPLELSHVAPDMSFLAVSDVSQDDAARALDLVREQEADQLNDYMAARWQPWETVLRR 242 LREPLELSHVAPDM FLAVS VS+DDA ALDLVRE+EA Q D+MA+RWQPWETVLRR Sbjct: 454 RLREPLELSHVAPDMRFLAVSHVSEDDATEALDLVREREASQFTDFMASRWQPWETVLRR 513 Query: 243 IAPDRYEAMQDRLIEAMGEEFESRLDQRLAEHGLLGDADAERVLGAQVRNEVAGEIKREV 302 IAPD + AMQDRL+EAMGEEF+SRLDQRLAEHGL+GD DAERVLGAQVRN++AGEIK EV Sbjct: 514 IAPDEHAAMQDRLVEAMGEEFQSRLDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEV 573 Query: 303 MHNVLAERGLE 313 MH +LAERGLE Sbjct: 574 MHRLLAERGLE 584 >gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] Length = 581 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 261/311 (83%), Positives = 284/311 (91%) Query: 3 DNPLPDDVLANLAAVGTPPQLAQQSLYEAAAHWLAEDPATLAEWQHFADEAGAQDYARFL 62 DNPLPDDVLANLA PPQLAQQSLYEAAA WLA+DPATLA+WQHFADE GAQDYA+FL Sbjct: 270 DNPLPDDVLANLATAEAPPQLAQQSLYEAAAQWLADDPATLAKWQHFADEPGAQDYAQFL 329 Query: 63 GRLRGNVNYGNDEFRQAVADDLRQAAANPRLREQFFAQASEANETCDDRVTLHWNGMQTA 122 RLR VNYGNDEFRQAVADDL+QAAANP LREQFFAQASEAN +C+DRVTLHWNGMQTA Sbjct: 330 ERLRETVNYGNDEFRQAVADDLQQAAANPTLREQFFAQASEANASCEDRVTLHWNGMQTA 389 Query: 123 RLNADVEEGVYDDRLGELIQRGRIAFRLEALDEIARDRVNLLAGDHPNVDDVEVYLAYQH 182 RLNADVE+GVYDDRLG+LIQRGR+AFRLEALDEIARDR+N LA +PNVDD+EVYLAYQH Sbjct: 390 RLNADVEDGVYDDRLGDLIQRGRVAFRLEALDEIARDRINSLASGNPNVDDIEVYLAYQH 449 Query: 183 LLREPLELSHVAPDMSFLAVSDVSQDDAARALDLVREQEADQLNDYMAARWQPWETVLRR 242 LREPLELSHVAPDM FLAVS VS+DDA ALDLVRE+EA Q D+MA+RWQPWETVLRR Sbjct: 450 RLREPLELSHVAPDMRFLAVSHVSEDDATEALDLVREREASQFTDFMASRWQPWETVLRR 509 Query: 243 IAPDRYEAMQDRLIEAMGEEFESRLDQRLAEHGLLGDADAERVLGAQVRNEVAGEIKREV 302 IAPD + AMQDRL+EAMGEEF+SRLDQRLAEHGL+GD DAERVLGAQVRN++AGEIK EV Sbjct: 510 IAPDEHAAMQDRLVEAMGEEFQSRLDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEV 569 Query: 303 MHNVLAERGLE 313 MH +LAERGLE Sbjct: 570 MHRLLAERGLE 580 >emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] Length = 610 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/332 (61%), Positives = 243/332 (73%), Gaps = 18/332 (5%) Query: 1 LEDNPLPDDVLANLAAV-----GTPPQL-----------AQQSLYEAAAHWLAEDPATLA 44 LE+NPLPD V A L A PQ+ +SL E AHWL +P+ +A Sbjct: 279 LENNPLPDLVQAGLTATIHAAGYAGPQVFLSTAEGALEVQPRSLQEVVAHWLEAEPSVMA 338 Query: 45 EWQHFADEAGAQDYARFLGRLRGNVNYGNDEFRQAVADDLRQAAANPRLREQFFAQASEA 104 WQ FA E GAQDYARFL RL G VNYGN+ FRQAV +DLRQAA PRLREQFF AS A Sbjct: 339 TWQRFAQEPGAQDYARFLDRLGGTVNYGNEAFRQAVVEDLRQAAVRPRLREQFFQLASGA 398 Query: 105 NETCDDRVTLHWNGMQTARLNADVEEGVYDDRLGELIQRGRIAFRLEALDEIARDRVNLL 164 +E C+DRVTL WNGMQ+ARLNADVE+GVYD RL EL+Q+GR+ FRLEALD IAR+ VN L Sbjct: 399 SERCEDRVTLTWNGMQSARLNADVEDGVYDGRLTELLQQGRVLFRLEALDRIARETVNSL 458 Query: 165 AGDHP--NVDDVEVYLAYQHLLREPLELSHVAPDMSFLAVSDVSQDDAARALDLVREQEA 222 P +VD++EVYLAYQ LR PL+L H+APDM FL VS+V++DD RA VR QEA Sbjct: 459 RRADPDADVDEIEVYLAYQTQLRNPLQLLHIAPDMRFLNVSNVTEDDIVRAEASVRNQEA 518 Query: 223 DQLNDYMAARWQPWETVLRRIAPDRYEAMQDRLIEAMGEEFESRLDQRLAEHGLLGDADA 282 + DY+A RW PWE+VLRRIAP+ + AM+ RL++AMG+EF++RLD+RLAE+GL GDADA Sbjct: 519 AEFPDYLATRWHPWESVLRRIAPEDHVAMERRLVDAMGDEFQARLDRRLAENGLTGDADA 578 Query: 283 ERVLGAQVRNEVAGEIKREVMHNVLAERGLEL 314 ERVLGAQ+R E+A EIK VMH VL GLEL Sbjct: 579 ERVLGAQIRKEIALEIKGPVMHQVLERFGLEL 610 >ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii NGR234] sp|P55456.1|Y4FR_RHISN RecName: Full=Probable E3 ubiquitin-protein ligase NGR_a03640 gb|AAB91674.1| nodulation outer protein NopM; probable type III effector [Sinorhizobium fredii NGR234] Length = 546 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/330 (58%), Positives = 235/330 (71%), Gaps = 16/330 (4%) Query: 1 LEDNPLPDDVLANLA----AVG----------TPPQLAQQSLYEAAAHWLAEDPATLAEW 46 LE+NPLP V NL A G P +LA++ L+E A WL D T+A W Sbjct: 217 LENNPLPHGVQTNLVTAMHAAGYAGPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAW 276 Query: 47 QHFADEAGAQDYARFLGRLRGNVNYGNDEFRQAVADDLRQAAANPRLREQFFAQASEANE 106 + FA+E GA+DYA FL RLR VNYGND FRQAVA LRQA A P+LR Q+F QAS A++ Sbjct: 277 RGFANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVARPQLRAQYFEQASGASD 336 Query: 107 TCDDRVTLHWNGMQTARLNADVEEGVYDDRLGELIQRGRIAFRLEALDEIARDRVNLLAG 166 +C+DR+TL WNGMQTA L ADVE+GVYD L +L+Q GR+ FRLEALD IAR+ VN L Sbjct: 337 SCEDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRR 396 Query: 167 DHPN--VDDVEVYLAYQHLLREPLELSHVAPDMSFLAVSDVSQDDAARALDLVREQEADQ 224 P+ +D++EVYLAYQ LR+ LEL HVAPDM FL VS V+++D ARA VRE EA Sbjct: 397 TDPDADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARG 456 Query: 225 LNDYMAARWQPWETVLRRIAPDRYEAMQDRLIEAMGEEFESRLDQRLAEHGLLGDADAER 284 +Y+A RWQPWE V+RRIAP + AMQ++LIEAMGEEF SRLD++LAEHGL GDADAER Sbjct: 457 FGEYVATRWQPWERVMRRIAPASHAAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAER 516 Query: 285 VLGAQVRNEVAGEIKREVMHNVLAERGLEL 314 V GA++ N++A IK E M VL RGLEL Sbjct: 517 VFGAEILNDIARRIKGETMEKVLRGRGLEL 546