BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0005.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001993687.1| hypothetical protein Rpal_4721 [Rhodopseudom... 137 1e-30 ref|YP_004110745.1| hypothetical protein Rpdx1_4461 [Rhodopseudo... 136 4e-30 ref|NP_949578.1| hypothetical protein RPA4242 [Rhodopseudomonas ... 135 6e-30 ref|YP_484990.1| hypothetical protein RPB_1369 [Rhodopseudomonas... 133 2e-29 ref|YP_002289795.1| hypothetical protein OCAR_6820 [Oligotropha ... 133 3e-29 >ref|YP_001993687.1| hypothetical protein Rpal_4721 [Rhodopseudomonas palustris TIE-1] gb|ACF03212.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 519 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 97/160 (60%), Gaps = 24/160 (15%) Query: 16 QAAVLSFLAGSGEPNTPVKRIDTHCSIVFLEPSRVLKIKRAVKLPYLDFSTLEKRRXLKI 75 Q V FL G G + PV +IDTH + VFLE +R LKI Sbjct: 13 QQDVFDFL-GRGAGDAPVVQIDTHGAAVFLEGNRALKI---------------------- 49 Query: 76 KRAVKLPYLDFSTLEKRRCACEDEIAVNKRHAPSIYRGVVPITR-GRDGLAIGGVGPVVE 134 KRAVK P+LD+STL KR+ ACE E+ V R AP+IYR VVPITR ++ L IGG GP VE Sbjct: 50 KRAVKFPFLDYSTLAKRKIACEQELEVGHRFAPTIYRRVVPITRTDKEALQIGGEGPAVE 109 Query: 135 WAVEMARFDENKTLDHLAEQDAIPPELGEKLATILLQSHR 174 WAVEM RFD++ TLDHLA ++ PEL + +A + SH+ Sbjct: 110 WAVEMMRFDDSATLDHLARAGSLGPELIDAVADAIAASHQ 149 >ref|YP_004110745.1| hypothetical protein Rpdx1_4461 [Rhodopseudomonas palustris DX-1] gb|ADU46012.1| hypothetical protein Rpdx1_4461 [Rhodopseudomonas palustris DX-1] Length = 520 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 100/161 (62%), Gaps = 24/161 (14%) Query: 16 QAAVLSFLAGSGEPN-TPVKRIDTHCSIVFLEPSRVLKIKRAVKLPYLDFSTLEKRRXLK 74 Q VL FL G P+ +PV +IDTH + VFL+ +RVLKIK Sbjct: 12 QQEVLGFLGGLRCPDGSPVVQIDTHGAAVFLQGNRVLKIK-------------------- 51 Query: 75 IKRAVKLPYLDFSTLEKRRCACEDEIAVNKRHAPSIYRGVVPITRGRDG-LAIGGVGPVV 133 RA+K P+LD+STL+KR ACE E+AV +R AP+IYR VVPI R G L I G GPVV Sbjct: 52 --RAIKFPFLDYSTLQKRHRACEQELAVGRRFAPAIYRRVVPICRSVSGALEIDGDGPVV 109 Query: 134 EWAVEMARFDENKTLDHLAEQDAIPPELGEKLATILLQSHR 174 EWAVEM+RFDE++TLDHLA + EL + +A + SHR Sbjct: 110 EWAVEMSRFDESRTLDHLASAGPLGSELVDAIADAIAASHR 150 >ref|NP_949578.1| hypothetical protein RPA4242 [Rhodopseudomonas palustris CGA009] emb|CAE29683.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 519 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 24/160 (15%) Query: 16 QAAVLSFLAGSGEPNTPVKRIDTHCSIVFLEPSRVLKIKRAVKLPYLDFSTLEKRRXLKI 75 Q V FL G G + PV RIDTH + VFLE +R +KI Sbjct: 13 QQDVFDFL-GRGAGDAPVVRIDTHGAAVFLEGNR----------------------AMKI 49 Query: 76 KRAVKLPYLDFSTLEKRRCACEDEIAVNKRHAPSIYRGVVPITRGRDG-LAIGGVGPVVE 134 KRAVK P+LD+STL KR+ ACE E+ V R AP+IYR VVPITR G L IGG GP VE Sbjct: 50 KRAVKFPFLDYSTLAKRKIACEQELEVGHRFAPTIYRRVVPITRTDKGALQIGGEGPAVE 109 Query: 135 WAVEMARFDENKTLDHLAEQDAIPPELGEKLATILLQSHR 174 WAVEM RFD++ TLDHLA ++ P L + +A + SH+ Sbjct: 110 WAVEMMRFDDSATLDHLARAGSLGPGLIDAVADAIAASHQ 149 >ref|YP_484990.1| hypothetical protein RPB_1369 [Rhodopseudomonas palustris HaA2] gb|ABD06079.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 547 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 99/170 (58%), Gaps = 30/170 (17%) Query: 10 ATGETGQAAVLSFLAGSGEPNT----PVKRIDTHCSIVFLEPSRVLKIKRAVKLPYLDFS 65 A+G Q +L F+A +P T PV+RIDTH + VFL R LKIKR Sbjct: 33 ASGAVRQEDILQFVA---DPATHGGLPVRRIDTHGAAVFLVGDRALKIKR---------- 79 Query: 66 TLEKRRXLKIKRAVKLPYLDFSTLEKRRCACEDEIAVNKRHAPSIYRGVVPITRGRDG-L 124 AV+ P+LD+ST +R+ ACE E+ VN+R AP IYR V+PITR DG L Sbjct: 80 ------------AVRFPFLDYSTPARRKIACEQELVVNRRFAPQIYRRVLPITRKADGTL 127 Query: 125 AIGGVGPVVEWAVEMARFDENKTLDHLAEQDAIPPELGEKLATILLQSHR 174 +GG G +EWAV+M RFDE +T+DHLA + P+L +A ++ SHR Sbjct: 128 ELGGDGEAIEWAVDMMRFDERRTVDHLAAAGPLAPDLVTAIADVIAASHR 177 >ref|YP_002289795.1| hypothetical protein OCAR_6820 [Oligotropha carboxidovorans OM5] ref|YP_004632212.1| hypothetical protein OCA5_c12550 [Oligotropha carboxidovorans OM5] gb|ACI93930.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI02395.1| hypothetical protein OCA4_c12550 [Oligotropha carboxidovorans OM4] gb|AEI05971.1| hypothetical protein OCA5_c12550 [Oligotropha carboxidovorans OM5] Length = 529 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 30/173 (17%) Query: 7 TATATGETGQAAVLSFLAGSGEPNT----PVKRIDTHCSIVFLEPSRVLKIKRAVKLPYL 62 A +GE Q AV + LA +P T PV R DTH S VFL P Sbjct: 14 NAAVSGEPAQEAVFALLA---DPATHGGGPVLRCDTHASAVFLAP--------------- 55 Query: 63 DFSTLEKRRXLKIKRAVKLPYLDFSTLEKRRCACEDEIAVNKRHAPSIYRGVVPITRGRD 122 RR K+KRAV+ P+LD+STL KR+ ACE E+ +N++ AP +YR V+ ITR + Sbjct: 56 -------RRAYKVKRAVQFPFLDYSTLPKRKAACEAELVINRQFAPRLYRQVIAITRESN 108 Query: 123 G-LAIGGVGPVVEWAVEMARFDENKTLDHLAEQDAIPPELGEKLATILLQSHR 174 G LA+GG G VEWAVEM RFDE++TLDH+A + A L KLA ++ H+ Sbjct: 109 GQLAVGGKGKPVEWAVEMERFDESRTLDHIAARGAFDDTLPAKLAHMVTAMHQ 161